Wall clock time and date at job start Tue Mar 31 2020 13:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46791 * 2 1 4 4 C 1.34233 * 116.99808 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99850 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47049 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47000 * 55.00219 * 7 6 4 9 9 C 1.50699 * 109.46987 * 175.00265 * 7 6 4 10 10 H 1.07995 * 119.99739 * 239.99602 * 9 7 6 11 11 C 1.37874 * 119.99971 * 60.27819 * 9 7 6 12 12 N 1.31517 * 120.00187 * 359.72031 * 11 9 7 13 13 Si 1.86805 * 120.00096 * 179.72371 * 11 9 7 14 14 H 1.48505 * 109.47203 * 59.99435 * 13 11 9 15 15 H 1.48494 * 109.47131 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46750 * 299.99821 * 13 11 9 17 17 O 1.42896 * 109.46876 * 295.00428 * 7 6 4 18 18 C 1.35900 * 117.00072 * 146.29666 * 17 7 6 19 19 C 1.38796 * 120.02801 * 6.16899 * 18 17 7 20 20 C 1.38148 * 120.05461 * 180.02562 * 19 18 17 21 21 C 1.38192 * 120.11216 * 0.02562 * 20 19 18 22 22 C 1.38750 * 120.05646 * 0.02562 * 21 20 19 23 23 O 1.35925 * 120.02805 * 180.02562 * 22 21 20 24 24 C 1.34261 * 116.99813 * 255.21752 * 23 22 21 25 25 C 1.50694 * 120.00162 * 175.00989 * 24 23 22 26 26 O 1.20831 * 119.99828 * 355.00451 * 24 23 22 27 27 C 1.38617 * 120.02785 * 185.89434 * 18 17 7 28 28 H 1.08997 * 109.47099 * 300.00290 * 1 2 3 29 29 H 1.08994 * 109.47322 * 59.99944 * 1 2 3 30 30 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47099 * 239.99710 * 2 1 3 32 32 H 1.08998 * 109.46944 * 119.99427 * 2 1 3 33 33 H 1.08999 * 109.47116 * 60.00236 * 6 4 3 34 34 H 1.08997 * 109.47526 * 299.99636 * 6 4 3 35 35 H 0.97001 * 120.00020 * 180.02562 * 12 11 9 36 36 H 1.07996 * 119.96709 * 0.02628 * 19 18 17 37 37 H 1.08007 * 119.94485 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.97097 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46790 * 359.97438 * 25 24 23 40 40 H 1.09005 * 109.47702 * 119.99585 * 25 24 23 41 41 H 1.09001 * 109.47445 * 240.00178 * 25 24 23 42 42 H 1.07995 * 120.05597 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.7806 2.2495 -0.8425 9 6 6.0242 4.2446 -0.1254 10 1 6.6591 4.4926 -0.9631 11 6 5.7451 5.1953 0.8333 12 7 4.9721 4.8932 1.8535 13 14 6.4650 6.9126 0.6832 14 1 6.0026 7.5341 -0.5838 15 1 6.0165 7.7394 1.8322 16 1 7.9477 6.8293 0.6815 17 8 5.8944 2.2644 1.2202 18 6 7.0109 1.4921 1.1596 19 6 7.7365 1.4116 -0.0209 20 6 8.8713 0.6262 -0.0833 21 6 9.2866 -0.0816 1.0285 22 6 8.5642 -0.0053 2.2107 23 8 8.9736 -0.7013 3.3041 24 6 8.2786 -1.8060 3.6188 25 6 8.7399 -2.6902 4.7486 26 8 7.2831 -2.0913 2.9962 27 6 7.4293 0.7884 2.2782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.5850 3.4698 0.8888 34 1 3.5844 3.4694 -0.8912 35 1 4.7755 5.5622 2.5278 36 1 7.4136 1.9634 -0.8912 37 1 9.4348 0.5652 -1.0027 38 1 10.1739 -0.6952 0.9771 39 1 9.6473 -2.2752 5.1874 40 1 7.9605 -2.7449 5.5087 41 1 8.9459 -3.6901 4.3667 42 1 6.8683 0.8529 3.1988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227564744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:54 Heat of formation + Delta-G solvation = -176.987015 kcal Electronic energy + Delta-G solvation = -27572.472777 eV Core-core repulsion = 23483.870516 eV Total energy + Delta-G solvation = -4088.602261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.93622 -39.81565 -38.82162 -37.18974 -36.13720 -35.55092 -33.24399 -31.57368 -30.83565 -30.54766 -29.36734 -28.57802 -26.34289 -23.51685 -23.12350 -22.09123 -21.71128 -20.56865 -19.62337 -18.20277 -17.16910 -16.99529 -16.46705 -16.29412 -16.13365 -15.93849 -15.43923 -15.16541 -14.68744 -14.58573 -13.90255 -13.63411 -13.61449 -13.17882 -12.98439 -12.91389 -12.70578 -12.52250 -12.33839 -12.17078 -11.86027 -11.57633 -11.41033 -11.29000 -11.12164 -11.03089 -11.02080 -10.81063 -10.55263 -10.41160 -10.30847 -10.10997 -9.70550 -9.35849 -9.22806 -8.77213 -8.25442 -7.21171 -6.26059 -4.47213 1.66078 2.13881 2.26376 3.03240 3.08669 3.19059 3.25823 3.27264 3.35006 4.22697 4.43647 4.45249 4.84394 5.08261 5.11611 5.13810 5.16745 5.18699 5.40562 5.43710 5.51034 5.56217 5.59670 5.84681 5.92476 5.94522 6.03714 6.09365 6.14289 6.28362 6.31713 6.42700 6.72051 6.72553 6.88872 6.97183 7.02137 7.11149 7.29144 7.42295 7.64156 7.85389 8.06131 8.45067 8.54874 8.84962 9.30870 10.75631 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.005241 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.816543 B = 5340.912005 C = 7837.293171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.454 3.546 5 O -0.512 6.512 6 C -0.104 4.104 7 C 0.221 3.779 8 H 0.038 0.962 9 C -0.560 4.560 10 H 0.069 0.931 11 C 0.086 3.914 12 N -0.857 5.857 13 Si 0.898 3.102 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.273 1.273 17 O -0.282 6.282 18 C 0.201 3.799 19 C -0.203 4.203 20 C -0.071 4.071 21 C -0.187 4.187 22 C 0.109 3.891 23 O -0.295 6.295 24 C 0.449 3.551 25 C -0.141 4.141 26 O -0.491 6.491 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.140 0.860 34 H 0.103 0.897 35 H 0.269 0.731 36 H 0.136 0.864 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -9.861 1.040 9.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.298 3.702 5 O -0.399 6.399 6 C -0.141 4.141 7 C 0.167 3.833 8 H 0.056 0.944 9 C -0.597 4.597 10 H 0.087 0.913 11 C -0.122 4.122 12 N -0.492 5.492 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.198 1.198 17 O -0.193 6.193 18 C 0.151 3.849 19 C -0.222 4.222 20 C -0.089 4.089 21 C -0.206 4.206 22 C 0.069 3.931 23 O -0.210 6.210 24 C 0.292 3.708 25 C -0.199 4.199 26 O -0.376 6.376 27 C -0.194 4.194 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.079 0.921 36 H 0.154 0.846 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 0.741 -10.116 1.180 10.212 hybrid contribution 0.354 0.818 -0.127 0.900 sum 1.096 -9.298 1.053 9.422 Atomic orbital electron populations 1.21774 0.93301 1.02320 1.03282 1.22859 0.94821 0.81758 1.02110 1.86566 1.26123 1.31009 1.84769 1.24903 0.79572 0.94315 0.71366 1.90630 1.60150 1.43564 1.45584 1.21887 0.96774 0.88201 1.07245 1.19907 0.88689 0.92636 0.82060 0.94423 1.21330 1.33249 0.94720 1.10380 0.91268 1.25057 0.93696 0.99082 0.94320 1.69856 1.34082 1.34645 1.10640 0.86565 0.79920 0.83204 0.77884 1.19791 1.20939 1.19844 1.86317 1.37313 1.57740 1.37949 1.18736 0.87054 0.87197 0.91906 1.21448 0.97653 1.03918 0.99135 1.20655 0.95725 0.95407 0.97137 1.20641 1.02557 1.05709 0.91712 1.18041 0.95377 0.94288 0.85429 1.84570 1.56245 1.36697 1.43509 1.24206 0.81848 0.79849 0.84901 1.21561 1.04505 0.98346 0.95442 1.90764 1.24782 1.70568 1.51460 1.20340 0.98224 1.01659 0.99164 0.91617 0.91729 0.90842 0.91876 0.91706 0.84251 0.87916 0.92121 0.84587 0.85928 0.86319 0.89000 0.87731 0.87762 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 37.16 0.38 -1.33 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.98 10.22 -39.27 -0.40 -7.38 16 4 C 0.45 9.91 7.84 36.00 0.28 10.19 16 5 O -0.51 -12.36 15.17 -24.05 -0.36 -12.73 16 6 C -0.10 -2.33 5.23 -27.88 -0.15 -2.47 16 7 C 0.22 5.40 1.31 -27.88 -0.04 5.36 16 8 H 0.04 0.90 5.60 -51.93 -0.29 0.61 16 9 C -0.56 -14.23 8.78 -34.44 -0.30 -14.53 16 10 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 11 C 0.09 2.20 5.25 -17.82 -0.09 2.11 16 12 N -0.86 -22.70 10.93 55.43 0.61 -22.09 16 13 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 14 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 15 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 O -0.28 -7.36 8.39 -33.85 -0.28 -7.64 16 18 C 0.20 4.82 6.67 -39.23 -0.26 4.56 16 19 C -0.20 -4.35 8.93 -39.41 -0.35 -4.70 16 20 C -0.07 -1.30 10.03 -39.63 -0.40 -1.69 16 21 C -0.19 -3.40 9.98 -39.41 -0.39 -3.79 16 22 C 0.11 2.18 5.17 -39.24 -0.20 1.98 16 23 O -0.29 -5.06 10.02 -23.61 -0.24 -5.30 16 24 C 0.45 6.96 7.93 36.00 0.29 7.25 16 25 C -0.14 -1.24 10.42 36.00 0.38 -0.86 16 26 O -0.49 -9.77 16.54 -18.75 -0.31 -10.08 16 27 C -0.17 -3.96 9.43 -39.29 -0.37 -4.33 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 32 H 0.06 1.04 8.13 -51.93 -0.42 0.62 16 33 H 0.14 3.41 6.23 -51.93 -0.32 3.08 16 34 H 0.10 2.08 8.14 -51.93 -0.42 1.66 16 35 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 36 H 0.14 2.87 5.84 -52.49 -0.31 2.56 16 37 H 0.12 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.12 2.80 8.06 -52.49 -0.42 2.38 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -32.40 366.79 -7.02 -39.42 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.54 Total: 6.55 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -1.00 Total: -1.12 kcal Atomic # 7 Polarization: -22.70 SS G_CDS: 0.61 Total: -22.09 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -1.60 Total: -43.13 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.40 -7.02 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227564744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.563 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds