Wall clock time and date at job start Tue Mar 31 2020 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45204 * 109.46791 * 2 1 4 4 C 1.34233 * 116.99808 * 180.02562 * 3 2 1 5 5 O 1.20831 * 119.99686 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99850 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.47049 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.47000 * 55.00219 * 7 6 4 9 9 C 1.50699 * 109.46987 * 175.00265 * 7 6 4 10 10 H 1.07995 * 119.99739 * 239.99602 * 9 7 6 11 11 C 1.37874 * 119.99971 * 60.27819 * 9 7 6 12 12 N 1.31517 * 120.00187 * 359.72031 * 11 9 7 13 13 Si 1.86805 * 120.00096 * 179.72371 * 11 9 7 14 14 H 1.48505 * 109.47203 * 59.99435 * 13 11 9 15 15 H 1.48494 * 109.47131 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46750 * 299.99821 * 13 11 9 17 17 O 1.42896 * 109.46876 * 295.00428 * 7 6 4 18 18 C 1.35900 * 117.00072 * 146.29666 * 17 7 6 19 19 C 1.38796 * 120.02801 * 6.16899 * 18 17 7 20 20 C 1.38148 * 120.05461 * 180.02562 * 19 18 17 21 21 C 1.38192 * 120.11216 * 0.02562 * 20 19 18 22 22 C 1.38750 * 120.05646 * 0.02562 * 21 20 19 23 23 O 1.35925 * 120.02805 * 180.02562 * 22 21 20 24 24 C 1.34261 * 116.99813 * 255.21752 * 23 22 21 25 25 C 1.50694 * 120.00162 * 175.00989 * 24 23 22 26 26 O 1.20831 * 119.99828 * 355.00451 * 24 23 22 27 27 C 1.38617 * 120.02785 * 185.89434 * 18 17 7 28 28 H 1.08997 * 109.47099 * 300.00290 * 1 2 3 29 29 H 1.08994 * 109.47322 * 59.99944 * 1 2 3 30 30 H 1.08998 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47099 * 239.99710 * 2 1 3 32 32 H 1.08998 * 109.46944 * 119.99427 * 2 1 3 33 33 H 1.08999 * 109.47116 * 60.00236 * 6 4 3 34 34 H 1.08997 * 109.47526 * 299.99636 * 6 4 3 35 35 H 0.97001 * 120.00020 * 180.02562 * 12 11 9 36 36 H 1.07996 * 119.96709 * 0.02628 * 19 18 17 37 37 H 1.08007 * 119.94485 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.97097 * 179.97438 * 21 20 19 39 39 H 1.09007 * 109.46790 * 359.97438 * 25 24 23 40 40 H 1.09005 * 109.47702 * 119.99585 * 25 24 23 41 41 H 1.09001 * 109.47445 * 240.00178 * 25 24 23 42 42 H 1.07995 * 120.05597 * 0.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 6 5.4486 2.8575 -0.0010 8 1 5.7806 2.2495 -0.8425 9 6 6.0242 4.2446 -0.1254 10 1 6.6591 4.4926 -0.9631 11 6 5.7451 5.1953 0.8333 12 7 4.9721 4.8932 1.8535 13 14 6.4650 6.9126 0.6832 14 1 6.0026 7.5341 -0.5838 15 1 6.0165 7.7394 1.8322 16 1 7.9477 6.8293 0.6815 17 8 5.8944 2.2644 1.2202 18 6 7.0109 1.4921 1.1596 19 6 7.7365 1.4116 -0.0209 20 6 8.8713 0.6262 -0.0833 21 6 9.2866 -0.0816 1.0285 22 6 8.5642 -0.0053 2.2107 23 8 8.9736 -0.7013 3.3041 24 6 8.2786 -1.8060 3.6188 25 6 8.7399 -2.6902 4.7486 26 8 7.2831 -2.0913 2.9962 27 6 7.4293 0.7884 2.2782 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.5850 3.4698 0.8888 34 1 3.5844 3.4694 -0.8912 35 1 4.7755 5.5622 2.5278 36 1 7.4136 1.9634 -0.8912 37 1 9.4348 0.5652 -1.0027 38 1 10.1739 -0.6952 0.9771 39 1 9.6473 -2.2752 5.1874 40 1 7.9605 -2.7449 5.5087 41 1 8.9459 -3.6901 4.3667 42 1 6.8683 0.8529 3.1988 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227564744.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:53 Heat of formation + Delta-G solvation = -194.478270 kcal Electronic energy + Delta-G solvation = -27573.231254 eV Core-core repulsion = 23483.870516 eV Total energy + Delta-G solvation = -4089.360739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.32315 -41.51367 -40.47077 -38.72615 -37.70548 -37.18711 -35.12887 -32.96097 -32.26796 -31.91118 -30.82034 -30.07287 -28.20803 -25.12012 -24.47977 -23.61691 -23.23401 -22.09479 -21.28971 -19.78921 -18.90658 -18.40854 -18.13085 -17.74775 -17.67706 -17.46883 -17.09772 -16.81311 -16.43687 -16.11822 -15.44817 -15.27227 -14.96054 -14.63965 -14.46504 -14.14728 -14.01206 -13.73241 -13.61207 -13.40470 -13.29120 -13.05782 -12.89170 -12.82705 -12.78503 -12.71831 -12.54871 -12.49271 -12.21661 -11.95098 -11.77496 -11.53785 -11.49177 -11.19193 -11.03960 -10.70610 -9.84442 -8.92943 -8.19062 -6.47093 0.10308 0.54745 1.04006 1.27817 1.43813 1.45286 1.52950 1.78839 1.81823 2.38200 2.71416 2.85343 3.21942 3.70242 3.89969 3.91289 3.96187 4.09336 4.15074 4.20394 4.30755 4.38584 4.44872 4.48966 4.51248 4.54142 4.62132 4.73290 4.84965 4.89408 4.95014 5.01547 5.10331 5.23001 5.28233 5.40383 5.45106 5.48121 5.57785 5.68735 5.89046 5.94152 6.52398 6.73286 6.83665 7.01067 7.34944 8.81952 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.008033 B = 0.005241 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3484.816543 B = 5340.912005 C = 7837.293171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.048 3.952 3 O -0.366 6.366 4 C 0.460 3.540 5 O -0.539 6.539 6 C -0.100 4.100 7 C 0.220 3.780 8 H 0.035 0.965 9 C -0.573 4.573 10 H 0.070 0.930 11 C 0.045 3.955 12 N -0.885 5.885 13 Si 0.958 3.042 14 H -0.259 1.259 15 H -0.283 1.283 16 H -0.277 1.277 17 O -0.311 6.311 18 C 0.164 3.836 19 C -0.219 4.219 20 C -0.059 4.059 21 C -0.178 4.178 22 C 0.107 3.893 23 O -0.293 6.293 24 C 0.445 3.555 25 C -0.130 4.130 26 O -0.542 6.542 27 C -0.204 4.204 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.268 0.732 36 H 0.133 0.867 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.117 0.883 40 H 0.121 0.879 41 H 0.130 0.870 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.447 -11.026 0.666 11.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.025 4.025 3 O -0.283 6.283 4 C 0.306 3.694 5 O -0.429 6.429 6 C -0.137 4.137 7 C 0.166 3.834 8 H 0.053 0.947 9 C -0.610 4.610 10 H 0.089 0.911 11 C -0.160 4.160 12 N -0.521 5.521 13 Si 0.783 3.217 14 H -0.184 1.184 15 H -0.208 1.208 16 H -0.202 1.202 17 O -0.224 6.224 18 C 0.116 3.884 19 C -0.237 4.237 20 C -0.076 4.076 21 C -0.197 4.197 22 C 0.066 3.934 23 O -0.209 6.209 24 C 0.292 3.708 25 C -0.186 4.186 26 O -0.430 6.430 27 C -0.223 4.223 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.150 0.850 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.068 -11.286 0.809 11.503 hybrid contribution -0.029 1.010 0.030 1.011 sum 2.039 -10.277 0.839 10.511 Atomic orbital electron populations 1.21802 0.89648 1.04474 1.03791 1.23272 0.97633 0.79752 1.01862 1.86543 1.24279 1.33423 1.84059 1.24659 0.80394 0.93625 0.70743 1.90612 1.61053 1.44267 1.47006 1.21748 0.96075 0.88791 1.07097 1.19911 0.89571 0.92161 0.81743 0.94739 1.21570 1.33387 0.95447 1.10549 0.91142 1.25749 0.93953 1.02389 0.93934 1.69992 1.35216 1.35575 1.11274 0.85619 0.78703 0.79130 0.78267 1.18387 1.20839 1.20245 1.86250 1.38654 1.58880 1.38597 1.19116 0.87443 0.88365 0.93480 1.21565 0.98930 1.05164 0.98088 1.21155 0.94313 0.93208 0.98962 1.21139 1.03056 1.04997 0.90484 1.18255 0.94402 0.93728 0.86989 1.84605 1.56262 1.37301 1.42683 1.25665 0.80741 0.79078 0.85349 1.21800 1.05939 0.97822 0.93026 1.90753 1.27092 1.71571 1.53624 1.20400 0.99948 1.03589 0.98403 0.91541 0.90766 0.87810 0.91429 0.92784 0.86209 0.86069 0.92270 0.84973 0.81457 0.82185 0.86399 0.86078 0.85165 0.87896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 10.29 71.98 0.74 -2.23 16 2 C 0.05 1.50 6.19 71.98 0.45 1.94 16 3 O -0.37 -14.17 10.22 -51.44 -0.53 -14.70 16 4 C 0.46 20.89 7.84 71.23 0.56 21.45 16 5 O -0.54 -27.25 15.17 27.02 0.41 -26.84 16 6 C -0.10 -4.67 5.23 29.85 0.16 -4.52 16 7 C 0.22 11.24 1.31 29.85 0.04 11.28 16 8 H 0.03 1.73 5.60 -2.39 -0.01 1.72 16 9 C -0.57 -29.92 8.78 25.60 0.22 -29.70 16 10 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 11 C 0.04 2.33 5.25 84.65 0.44 2.77 16 12 N -0.89 -48.55 10.93 21.45 0.23 -48.31 16 13 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 14 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 15 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 16 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 17 O -0.31 -17.23 8.39 -78.62 -0.66 -17.89 16 18 C 0.16 8.30 6.67 22.49 0.15 8.45 16 19 C -0.22 -9.55 8.93 22.38 0.20 -9.35 16 20 C -0.06 -2.03 10.03 22.24 0.22 -1.81 16 21 C -0.18 -6.08 9.98 22.38 0.22 -5.85 16 22 C 0.11 4.29 5.17 22.49 0.12 4.40 16 23 O -0.29 -9.81 10.02 4.56 0.05 -9.76 16 24 C 0.44 13.39 7.93 71.23 0.56 13.95 16 25 C -0.13 -1.87 10.42 71.23 0.74 -1.13 16 26 O -0.54 -21.87 16.54 21.95 0.36 -21.51 16 27 C -0.20 -9.73 9.43 22.46 0.21 -9.52 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 2.02 8.13 -2.39 -0.02 2.01 16 32 H 0.05 1.78 8.13 -2.39 -0.02 1.76 16 33 H 0.12 6.17 6.23 -2.39 -0.01 6.15 16 34 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 35 H 0.27 14.02 8.31 -92.71 -0.77 13.24 16 36 H 0.13 5.75 5.84 -2.91 -0.02 5.73 16 37 H 0.17 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 39 H 0.12 1.13 8.14 -2.38 -0.02 1.11 16 40 H 0.12 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.13 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.10 5.11 8.06 -2.91 -0.02 5.09 16 Total: -1.00 -75.27 366.79 7.97 -67.29 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 1.04 Total: 28.36 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.04 Total: 0.14 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.23 Total: -48.31 kcal Atomic # 8 Polarization: -90.33 SS G_CDS: -0.37 Total: -90.70 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Total: -75.27 7.97 -67.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227564744.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.183 kcal (2) G-P(sol) polarization free energy of solvation -75.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds