Wall clock time and date at job start Tue Mar 31 2020 14:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35837 * 117.00351 * 2 1 4 4 C 1.36350 * 119.62150 * 359.97438 * 3 2 1 5 5 C 1.40516 * 119.94335 * 180.02562 * 4 3 2 6 6 C 1.40560 * 121.03475 * 180.02562 * 5 4 3 7 7 C 1.36113 * 119.71145 * 179.97438 * 6 5 4 8 8 C 1.39371 * 121.00450 * 0.02562 * 7 6 5 9 9 C 1.36095 * 120.97094 * 359.97438 * 8 7 6 10 10 C 1.40628 * 119.67863 * 0.02562 * 9 8 7 11 11 C 1.40352 * 121.07583 * 180.26100 * 10 9 8 12 12 C 1.38137 * 119.54159 * 180.22669 * 11 10 9 13 13 C 1.48320 * 119.74557 * 179.77170 * 12 11 10 14 14 C 1.39740 * 119.99192 * 129.74475 * 13 12 11 15 15 C 1.38615 * 120.34634 * 179.97438 * 14 13 12 16 16 F 1.35106 * 119.83085 * 179.97438 * 15 14 13 17 17 C 1.37940 * 120.33285 * 0.02562 * 15 14 13 18 18 C 1.40723 * 119.97437 * 359.70149 * 17 15 14 19 19 C 1.41428 * 120.17131 * 180.29718 * 18 17 15 20 20 H 1.08004 * 120.00263 * 204.66571 * 19 18 17 21 21 C 1.39933 * 120.00031 * 24.66993 * 19 18 17 22 22 N 1.30829 * 119.99745 * 17.75366 * 21 19 18 23 23 Si 1.86804 * 119.99810 * 197.76103 * 21 19 18 24 24 H 1.48493 * 109.47186 * 94.68768 * 23 21 19 25 25 H 1.48496 * 109.46771 * 214.68964 * 23 21 19 26 26 H 1.48501 * 109.46998 * 334.68510 * 23 21 19 27 27 C 1.38780 * 119.99218 * 309.72705 * 13 12 11 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46650 * 299.99430 * 1 2 3 30 30 H 1.08991 * 109.47142 * 59.99772 * 1 2 3 31 31 H 1.08008 * 120.03232 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.14888 * 359.96164 * 6 5 4 33 33 H 1.07997 * 119.50027 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.51802 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.16185 * 179.97438 * 9 8 7 36 36 H 1.07993 * 120.23341 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.82855 * 0.02562 * 14 13 12 38 38 H 1.07998 * 120.01563 * 179.97438 * 17 15 14 39 39 H 0.97000 * 119.99466 * 179.97438 * 22 21 19 40 40 H 1.07997 * 120.16588 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2957 2.3489 -0.0005 5 6 1.9267 3.6045 -0.0011 6 6 1.1759 4.7928 -0.0011 7 6 1.8150 5.9945 -0.0011 8 6 3.2068 6.0675 -0.0016 9 6 3.9673 4.9388 -0.0016 10 6 3.3431 3.6786 -0.0016 11 6 4.0987 2.4959 0.0038 12 6 3.4527 1.2749 -0.0011 13 6 4.2467 0.0222 -0.0005 14 6 3.9635 -0.9839 0.9270 15 6 4.7006 -2.1578 0.9338 16 9 4.4182 -3.1235 1.8355 17 6 5.7217 -2.3446 0.0253 18 6 6.0149 -1.3428 -0.9185 19 6 7.0567 -1.5325 -1.8559 20 1 7.5491 -0.6781 -2.2964 21 6 7.4496 -2.8273 -2.2129 22 7 6.6593 -3.8411 -1.9696 23 14 9.1026 -3.1080 -3.0365 24 1 10.1148 -3.4589 -2.0082 25 1 8.9856 -4.2187 -4.0152 26 1 9.5213 -1.8696 -3.7409 27 6 5.2706 -0.1506 -0.9213 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2175 2.2859 -0.0005 32 1 0.0966 4.7525 -0.0013 33 1 1.2348 6.9054 -0.0007 34 1 3.6890 7.0338 -0.0020 35 1 5.0448 5.0105 -0.0025 36 1 5.1777 2.5400 0.0077 37 1 3.1657 -0.8466 1.6418 38 1 6.2930 -3.2610 0.0355 39 1 6.9315 -4.7385 -2.2174 40 1 5.4911 0.6250 -1.6396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245420388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:17 Heat of formation + Delta-G solvation = -29.766435 kcal Electronic energy + Delta-G solvation = -25608.463362 eV Core-core repulsion = 21845.926774 eV Total energy + Delta-G solvation = -3762.536589 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.111 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -47.61888 -40.51295 -38.67622 -37.46601 -35.42049 -33.73684 -32.46351 -30.95096 -29.61560 -28.95062 -27.77329 -27.17329 -25.46001 -23.34972 -22.59281 -21.78273 -20.75471 -20.49600 -18.19881 -17.76864 -16.92306 -16.31767 -15.61628 -15.60663 -15.08026 -14.93905 -14.72229 -14.60302 -14.46712 -14.36248 -14.27521 -13.40319 -13.32244 -13.00396 -12.96196 -12.78267 -12.08813 -12.04512 -11.73622 -11.66482 -11.59736 -11.22649 -11.08396 -10.94632 -10.79616 -10.70603 -10.48322 -10.20604 -10.00455 -9.74280 -9.64804 -9.23711 -8.21013 -7.61669 -7.48597 -7.18086 -6.83893 -4.49789 0.65037 1.16948 2.16381 2.63016 2.67290 3.03469 3.07495 3.07930 3.27900 3.48029 3.86755 4.25530 4.48229 4.70511 4.90038 4.97207 5.09187 5.13938 5.23175 5.23394 5.36027 5.39734 5.51541 5.52732 5.58925 5.79868 5.83399 5.99784 6.12295 6.15243 6.30312 6.38372 6.49820 6.59387 6.61840 6.68380 6.82666 6.93621 6.98234 7.04414 7.14628 7.41172 7.64200 7.66363 7.74294 7.86528 8.14100 8.48197 8.74973 8.77389 10.08900 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.003638 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.233431 B = 7694.697398 C = 8996.008561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.155 3.845 4 C -0.227 4.227 5 C -0.018 4.018 6 C -0.119 4.119 7 C -0.115 4.115 8 C -0.139 4.139 9 C -0.090 4.090 10 C -0.076 4.076 11 C -0.070 4.070 12 C -0.030 4.030 13 C -0.010 4.010 14 C -0.239 4.239 15 C 0.103 3.897 16 F -0.167 7.167 17 C -0.194 4.194 18 C 0.127 3.873 19 C -0.458 4.458 20 H 0.083 0.917 21 C 0.075 3.925 22 N -0.787 5.787 23 Si 0.911 3.089 24 H -0.267 1.267 25 H -0.277 1.277 26 H -0.260 1.260 27 C -0.207 4.207 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.139 0.861 37 H 0.101 0.899 38 H 0.129 0.871 39 H 0.283 0.717 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 12.508 2.303 15.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.207 6.207 3 C 0.109 3.891 4 C -0.246 4.246 5 C -0.018 4.018 6 C -0.137 4.137 7 C -0.133 4.133 8 C -0.157 4.157 9 C -0.108 4.108 10 C -0.077 4.077 11 C -0.088 4.088 12 C -0.030 4.030 13 C -0.011 4.011 14 C -0.259 4.259 15 C 0.084 3.916 16 F -0.146 7.146 17 C -0.214 4.214 18 C 0.124 3.876 19 C -0.487 4.487 20 H 0.101 0.899 21 C -0.143 4.143 22 N -0.412 5.412 23 Si 0.735 3.265 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.184 1.184 27 C -0.227 4.227 28 H 0.117 0.883 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.144 0.856 36 H 0.157 0.843 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.387 11.999 2.287 14.817 hybrid contribution 0.220 -0.319 -0.289 0.484 sum -8.167 11.680 1.998 14.391 Atomic orbital electron populations 1.23062 0.79269 1.03869 1.00862 1.86301 1.20429 1.26361 1.87589 1.18773 0.91630 0.84321 0.94354 1.20812 0.99544 0.91338 1.12857 1.17755 0.92369 0.92992 0.98716 1.20900 0.99218 0.91764 1.01811 1.20760 0.94670 0.97499 1.00365 1.20720 0.93907 0.98296 1.02757 1.21039 0.99780 0.91462 0.98494 1.18017 0.92536 0.93730 1.03374 1.21295 0.99895 0.89608 0.98008 1.18444 0.89354 0.94184 1.01065 1.17865 0.95472 0.91201 0.96521 1.20171 1.05338 0.94694 1.05686 1.17554 0.98180 0.85932 0.89937 1.91335 1.93476 1.63038 1.66761 1.21355 1.00220 1.03240 0.96632 1.17256 0.90501 0.89722 0.90137 1.19586 1.15264 0.92830 1.21025 0.89875 1.25958 0.98072 0.95712 0.94606 1.69822 1.34453 1.00849 1.36030 0.86252 0.81834 0.79056 0.79363 1.19216 1.20204 1.18422 1.21079 0.99035 1.00532 1.02047 0.88293 0.92931 0.92866 0.85325 0.86182 0.86510 0.86401 0.85637 0.84322 0.88049 0.85311 0.90586 0.88083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 101.05 0.99 1.28 16 2 O -0.29 -5.17 8.74 -19.23 -0.17 -5.34 16 3 C 0.16 2.72 6.55 -39.28 -0.26 2.46 16 4 C -0.23 -3.35 8.72 -39.40 -0.34 -3.69 16 5 C -0.02 -0.27 5.74 -106.79 -0.61 -0.88 16 6 C -0.12 -1.43 9.76 -39.47 -0.39 -1.81 16 7 C -0.11 -1.24 9.95 -39.92 -0.40 -1.64 16 8 C -0.14 -1.54 9.95 -39.93 -0.40 -1.93 16 9 C -0.09 -1.14 9.76 -39.45 -0.39 -1.52 16 10 C -0.08 -1.16 5.74 -106.82 -0.61 -1.77 16 11 C -0.07 -1.17 9.21 -38.82 -0.36 -1.53 16 12 C -0.03 -0.57 5.48 -104.80 -0.57 -1.15 16 13 C -0.01 -0.23 5.24 -104.99 -0.55 -0.78 16 14 C -0.24 -5.57 8.73 -38.88 -0.34 -5.91 16 15 C 0.10 2.57 7.28 -39.55 -0.29 2.29 16 16 F -0.17 -4.03 17.26 2.25 0.04 -4.00 16 17 C -0.19 -5.12 8.66 -38.75 -0.34 -5.45 16 18 C 0.13 3.29 5.57 -106.87 -0.60 2.70 16 19 C -0.46 -11.73 9.05 -37.73 -0.34 -12.07 16 20 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 21 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 22 N -0.79 -20.11 10.96 55.55 0.61 -19.50 16 23 Si 0.91 18.17 29.60 -169.99 -5.03 13.14 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 27 C -0.21 -4.92 9.21 -38.51 -0.35 -5.27 16 28 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.53 7.63 -51.93 -0.40 0.14 16 30 H 0.05 0.55 7.63 -51.93 -0.40 0.16 16 31 H 0.13 1.53 6.17 -52.48 -0.32 1.21 16 32 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 34 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 36 H 0.14 2.16 8.01 -52.49 -0.42 1.74 16 37 H 0.10 2.24 7.63 -52.49 -0.40 1.84 16 38 H 0.13 3.52 6.16 -52.49 -0.32 3.19 16 39 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 40 H 0.10 2.24 8.02 -52.49 -0.42 1.82 16 LS Contribution 345.23 15.07 5.20 5.20 Total: -1.00 -28.83 345.23 -9.92 -38.75 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.35 Total: 6.67 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -6.23 Total: -34.93 kcal Atomic # 7 Polarization: -20.11 SS G_CDS: 0.61 Total: -19.50 kcal Atomic # 8 Polarization: -5.17 SS G_CDS: -0.17 Total: -5.34 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.04 Total: -4.00 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.83 -9.92 -38.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245420388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.982 kcal (2) G-P(sol) polarization free energy of solvation -28.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds