Wall clock time and date at job start Tue Mar 31 2020 14:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35837 * 117.00351 * 2 1 4 4 C 1.36350 * 119.62150 * 359.97438 * 3 2 1 5 5 C 1.40516 * 119.94335 * 180.02562 * 4 3 2 6 6 C 1.40560 * 121.03475 * 180.02562 * 5 4 3 7 7 C 1.36113 * 119.71145 * 179.97438 * 6 5 4 8 8 C 1.39371 * 121.00450 * 0.02562 * 7 6 5 9 9 C 1.36095 * 120.97094 * 359.97438 * 8 7 6 10 10 C 1.40628 * 119.67863 * 0.02562 * 9 8 7 11 11 C 1.40352 * 121.07583 * 180.26100 * 10 9 8 12 12 C 1.38137 * 119.54159 * 180.22669 * 11 10 9 13 13 C 1.48320 * 119.74557 * 179.77170 * 12 11 10 14 14 C 1.39740 * 119.99192 * 129.74475 * 13 12 11 15 15 C 1.38615 * 120.34634 * 179.97438 * 14 13 12 16 16 F 1.35106 * 119.83085 * 179.97438 * 15 14 13 17 17 C 1.37940 * 120.33285 * 0.02562 * 15 14 13 18 18 C 1.40723 * 119.97437 * 359.70149 * 17 15 14 19 19 C 1.41428 * 120.17131 * 180.29718 * 18 17 15 20 20 H 1.08004 * 120.00263 * 204.66571 * 19 18 17 21 21 C 1.39933 * 120.00031 * 24.66993 * 19 18 17 22 22 N 1.30829 * 119.99745 * 17.75366 * 21 19 18 23 23 Si 1.86804 * 119.99810 * 197.76103 * 21 19 18 24 24 H 1.48493 * 109.47186 * 94.68768 * 23 21 19 25 25 H 1.48496 * 109.46771 * 214.68964 * 23 21 19 26 26 H 1.48501 * 109.46998 * 334.68510 * 23 21 19 27 27 C 1.38780 * 119.99218 * 309.72705 * 13 12 11 28 28 H 1.09000 * 109.46986 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46650 * 299.99430 * 1 2 3 30 30 H 1.08991 * 109.47142 * 59.99772 * 1 2 3 31 31 H 1.08008 * 120.03232 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.14888 * 359.96164 * 6 5 4 33 33 H 1.07997 * 119.50027 * 180.02562 * 7 6 5 34 34 H 1.08001 * 119.51802 * 179.97438 * 8 7 6 35 35 H 1.07994 * 120.16185 * 179.97438 * 9 8 7 36 36 H 1.07993 * 120.23341 * 359.97438 * 11 10 9 37 37 H 1.07996 * 119.82855 * 0.02562 * 14 13 12 38 38 H 1.07998 * 120.01563 * 179.97438 * 17 15 14 39 39 H 0.97000 * 119.99466 * 179.97438 * 22 21 19 40 40 H 1.07997 * 120.16588 * 359.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2103 0.0000 4 6 1.2957 2.3489 -0.0005 5 6 1.9267 3.6045 -0.0011 6 6 1.1759 4.7928 -0.0011 7 6 1.8150 5.9945 -0.0011 8 6 3.2068 6.0675 -0.0016 9 6 3.9673 4.9388 -0.0016 10 6 3.3431 3.6786 -0.0016 11 6 4.0987 2.4959 0.0038 12 6 3.4527 1.2749 -0.0011 13 6 4.2467 0.0222 -0.0005 14 6 3.9635 -0.9839 0.9270 15 6 4.7006 -2.1578 0.9338 16 9 4.4182 -3.1235 1.8355 17 6 5.7217 -2.3446 0.0253 18 6 6.0149 -1.3428 -0.9185 19 6 7.0567 -1.5325 -1.8559 20 1 7.5491 -0.6781 -2.2964 21 6 7.4496 -2.8273 -2.2129 22 7 6.6593 -3.8411 -1.9696 23 14 9.1026 -3.1080 -3.0365 24 1 10.1148 -3.4589 -2.0082 25 1 8.9856 -4.2187 -4.0152 26 1 9.5213 -1.8696 -3.7409 27 6 5.2706 -0.1506 -0.9213 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2175 2.2859 -0.0005 32 1 0.0966 4.7525 -0.0013 33 1 1.2348 6.9054 -0.0007 34 1 3.6890 7.0338 -0.0020 35 1 5.0448 5.0105 -0.0025 36 1 5.1777 2.5400 0.0077 37 1 3.1657 -0.8466 1.6418 38 1 6.2930 -3.2610 0.0355 39 1 6.9315 -4.7385 -2.2174 40 1 5.4911 0.6250 -1.6396 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245420388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:16 Heat of formation + Delta-G solvation = -41.930357 kcal Electronic energy + Delta-G solvation = -25608.990830 eV Core-core repulsion = 21845.926774 eV Total energy + Delta-G solvation = -3763.064056 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.111 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.59471 -41.65539 -39.76578 -39.22413 -36.70059 -35.46608 -33.59236 -32.37232 -31.47478 -30.09905 -29.15859 -28.20317 -27.36182 -24.70055 -23.66886 -22.99818 -22.42142 -22.18499 -19.52722 -19.24913 -18.02183 -17.93958 -17.12940 -16.88808 -16.70209 -16.42749 -16.37424 -16.25022 -15.94875 -15.70055 -15.50069 -14.72568 -14.48948 -14.39380 -14.19609 -13.95950 -13.87037 -13.47023 -13.18336 -12.92376 -12.85773 -12.73136 -12.55616 -12.45663 -12.20691 -12.10413 -11.83966 -11.77056 -11.46212 -11.30607 -11.06683 -10.78871 -9.67577 -9.39758 -8.85233 -8.69295 -8.63357 -6.46579 -0.45377 0.05079 0.77324 0.84332 1.16622 1.38825 1.49363 1.53760 2.07377 2.18592 2.40120 2.62362 3.19514 3.50660 3.55371 3.72787 3.90725 4.05446 4.12924 4.17255 4.28052 4.35697 4.38816 4.45048 4.50054 4.53108 4.69382 4.71499 4.77218 4.84202 4.97630 5.00707 5.06338 5.11845 5.23518 5.29591 5.42252 5.56989 5.65529 5.68846 5.71100 5.77857 5.86847 5.93356 6.10405 6.22294 6.50913 6.54339 6.82232 6.84042 8.26186 Molecular weight = 322.11amu Principal moments of inertia in cm(-1) A = 0.014143 B = 0.003638 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.233431 B = 7694.697398 C = 8996.008561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.332 6.332 3 C 0.133 3.867 4 C -0.213 4.213 5 C -0.032 4.032 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.130 4.130 9 C -0.105 4.105 10 C -0.095 4.095 11 C -0.065 4.065 12 C -0.073 4.073 13 C 0.006 3.994 14 C -0.242 4.242 15 C 0.093 3.907 16 F -0.166 7.166 17 C -0.223 4.223 18 C 0.105 3.895 19 C -0.488 4.488 20 H 0.089 0.911 21 C 0.034 3.966 22 N -0.822 5.822 23 Si 0.988 3.012 24 H -0.263 1.263 25 H -0.268 1.268 26 H -0.252 1.252 27 C -0.220 4.220 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.158 0.842 32 H 0.147 0.853 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.291 0.709 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 15.907 1.811 18.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.088 3.912 4 C -0.232 4.232 5 C -0.033 4.033 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.148 4.148 9 C -0.123 4.123 10 C -0.096 4.096 11 C -0.083 4.083 12 C -0.073 4.073 13 C 0.006 3.994 14 C -0.262 4.262 15 C 0.074 3.926 16 F -0.145 7.145 17 C -0.244 4.244 18 C 0.103 3.897 19 C -0.516 4.516 20 H 0.107 0.893 21 C -0.182 4.182 22 N -0.447 5.447 23 Si 0.808 3.192 24 H -0.187 1.187 25 H -0.193 1.193 26 H -0.175 1.175 27 C -0.239 4.239 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.171 0.829 34 H 0.167 0.833 35 H 0.157 0.843 36 H 0.157 0.843 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.102 0.898 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.506 15.409 1.806 18.195 hybrid contribution 0.397 -1.112 -0.096 1.185 sum -9.109 14.297 1.710 17.038 Atomic orbital electron populations 1.23354 0.76790 1.05191 1.02483 1.86228 1.23203 1.27008 1.88055 1.18794 0.91139 0.85240 0.96073 1.21093 1.00774 0.90495 1.10818 1.18114 0.92472 0.94066 0.98613 1.21231 1.00613 0.91049 1.01460 1.21256 0.94868 0.98492 0.97747 1.21175 0.94310 0.99025 1.00277 1.21275 1.00909 0.91040 0.99076 1.18219 0.93147 0.93973 1.04218 1.21387 1.00138 0.89799 0.96965 1.18393 0.90389 0.93222 1.05289 1.18150 0.94433 0.92245 0.94577 1.20327 1.05294 0.94425 1.06190 1.17739 0.98324 0.86584 0.89914 1.91318 1.93451 1.63135 1.66630 1.21239 1.01589 1.03253 0.98306 1.17590 0.91239 0.90486 0.90416 1.19903 1.16064 0.93939 1.21724 0.89295 1.26900 1.01602 0.94863 0.94846 1.69891 1.36400 1.01566 1.36808 0.85101 0.76486 0.79288 0.78333 1.18726 1.19294 1.17521 1.21235 0.99669 1.00176 1.02853 0.87322 0.91044 0.91311 0.82449 0.83488 0.82944 0.83280 0.84304 0.84293 0.87119 0.87121 0.89849 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.80 113.37 1.11 1.47 16 2 O -0.33 -11.77 8.74 -91.72 -0.80 -12.57 16 3 C 0.13 4.68 6.55 22.46 0.15 4.82 16 4 C -0.21 -5.93 8.72 22.38 0.20 -5.74 16 5 C -0.03 -0.88 5.74 -21.27 -0.12 -1.00 16 6 C -0.13 -2.49 9.76 22.34 0.22 -2.27 16 7 C -0.11 -1.76 9.95 22.05 0.22 -1.54 16 8 C -0.13 -2.31 9.95 22.04 0.22 -2.09 16 9 C -0.11 -2.40 9.76 22.35 0.22 -2.18 16 10 C -0.10 -2.77 5.74 -21.29 -0.12 -2.89 16 11 C -0.07 -2.21 9.21 22.76 0.21 -2.00 16 12 C -0.07 -2.85 5.48 -19.98 -0.11 -2.96 16 13 C 0.01 0.29 5.24 -20.10 -0.11 0.19 16 14 C -0.24 -11.83 8.73 22.72 0.20 -11.63 16 15 C 0.09 4.93 7.28 22.29 0.16 5.09 16 16 F -0.17 -8.41 17.26 44.97 0.78 -7.64 16 17 C -0.22 -12.53 8.66 22.81 0.20 -12.33 16 18 C 0.11 5.78 5.57 -21.32 -0.12 5.66 16 19 C -0.49 -25.99 9.05 23.47 0.21 -25.78 16 20 H 0.09 4.46 7.91 -2.91 -0.02 4.43 16 21 C 0.03 1.70 5.14 85.25 0.44 2.13 16 22 N -0.82 -43.67 10.96 21.82 0.24 -43.43 16 23 Si 0.99 37.68 29.60 68.60 2.03 39.71 16 24 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 26 H -0.25 -9.18 7.11 99.48 0.71 -8.47 16 27 C -0.22 -10.96 9.21 22.96 0.21 -10.75 16 28 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.07 1.31 7.63 -2.39 -0.02 1.30 16 30 H 0.07 1.31 7.63 -2.39 -0.02 1.29 16 31 H 0.16 3.28 6.17 -2.91 -0.02 3.26 16 32 H 0.15 2.08 8.06 -2.91 -0.02 2.06 16 33 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 34 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 36 H 0.14 4.47 8.01 -2.91 -0.02 4.45 16 37 H 0.11 5.10 7.63 -2.91 -0.02 5.08 16 38 H 0.11 6.49 6.16 -2.91 -0.02 6.47 16 39 H 0.29 13.93 8.30 -92.71 -0.77 13.16 16 40 H 0.11 5.12 8.02 -2.91 -0.02 5.10 16 Total: -1.00 -66.43 345.23 6.70 -59.74 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 1.07 Total: 27.97 kcal Atomic # 6 Polarization: -67.16 SS G_CDS: 3.38 Total: -63.78 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: 0.24 Total: -43.43 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.80 Total: -12.57 kcal Atomic # 9 Polarization: -8.41 SS G_CDS: 0.78 Total: -7.64 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -66.43 6.70 -59.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245420388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.807 kcal (2) G-P(sol) polarization free energy of solvation -66.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds