Wall clock time and date at job start Tue Mar 31 2020 13:06:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47034 * 2 1 4 4 C 1.53002 * 109.47565 * 240.00396 * 2 1 3 5 5 C 1.50704 * 109.47014 * 64.99705 * 4 2 1 6 6 O 1.20820 * 120.00024 * 0.02562 * 5 4 2 7 7 O 1.34227 * 119.99754 * 180.02562 * 5 4 2 8 8 C 1.53000 * 109.47247 * 120.00006 * 2 1 3 9 9 C 1.50693 * 109.47169 * 295.00232 * 8 2 1 10 10 O 1.20827 * 120.00429 * 359.97438 * 9 8 2 11 11 O 1.34234 * 119.99984 * 179.97438 * 9 8 2 12 12 C 1.45201 * 116.99844 * 179.97438 * 11 9 8 13 13 C 1.50695 * 109.47203 * 179.97438 * 12 11 9 14 14 C 1.38300 * 119.93634 * 269.73207 * 13 12 11 15 15 C 1.38103 * 120.07235 * 179.72038 * 14 13 12 16 16 C 1.38881 * 119.92859 * 0.56979 * 15 14 13 17 17 O 1.35743 * 120.07033 * 179.67702 * 16 15 14 18 18 C 1.34829 * 117.00323 * 174.48588 * 17 16 15 19 19 H 1.08000 * 119.99772 * 5.06302 * 18 17 16 20 20 C 1.38655 * 120.00285 * 185.06067 * 18 17 16 21 21 N 1.31559 * 119.99902 * 180.02562 * 20 18 17 22 22 Si 1.86796 * 120.00043 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.46873 * 89.99837 * 22 20 18 24 24 H 1.48495 * 109.47237 * 210.00095 * 22 20 18 25 25 H 1.48505 * 109.47176 * 330.00205 * 22 20 18 26 26 C 1.38884 * 119.86119 * 359.70391 * 16 15 14 27 27 C 1.38100 * 119.93123 * 0.02562 * 26 16 15 28 28 H 1.09007 * 109.46704 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47668 * 299.99812 * 1 2 3 30 30 H 1.09005 * 109.47168 * 60.00289 * 1 2 3 31 31 H 1.08994 * 109.47619 * 185.00095 * 4 2 1 32 32 H 1.09006 * 109.46726 * 305.00207 * 4 2 1 33 33 H 0.96702 * 116.99804 * 180.02562 * 7 5 4 34 34 H 1.08998 * 109.46904 * 174.99949 * 8 2 1 35 35 H 1.09005 * 109.46881 * 55.00495 * 8 2 1 36 36 H 1.08999 * 109.47236 * 60.00273 * 12 11 9 37 37 H 1.09004 * 109.47450 * 300.00276 * 12 11 9 38 38 H 1.08004 * 119.96372 * 359.97187 * 14 13 12 39 39 H 1.07998 * 120.03412 * 180.26808 * 15 14 13 40 40 H 0.97002 * 119.99895 * 179.97438 * 21 20 18 41 41 H 1.07996 * 120.03050 * 179.97438 * 26 16 15 42 42 H 1.08003 * 119.96708 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0140 1.0836 -2.3637 7 8 1.9832 -0.3899 -3.6952 8 6 2.0400 -0.7212 1.2492 9 6 1.6413 0.0570 2.4765 10 8 1.0140 1.0835 2.3637 11 8 1.9831 -0.3902 3.6952 12 6 1.5660 0.4108 4.8321 13 6 2.0350 -0.2429 6.1063 14 6 1.2228 -1.1567 6.7527 15 6 1.6522 -1.7618 7.9175 16 6 2.8963 -1.4429 8.4460 17 8 3.3185 -2.0311 9.5943 18 6 4.5792 -1.7644 9.9910 19 1 5.1755 -1.0458 9.4483 20 6 5.1102 -2.4126 11.0957 21 7 6.3402 -2.1519 11.4831 22 14 4.0792 -3.6559 12.0340 23 1 4.2837 -5.0073 11.4534 24 1 4.4896 -3.6630 13.4611 25 1 2.6445 -3.2859 11.9334 26 6 3.7073 -0.5206 7.7976 27 6 3.2745 0.0768 6.6302 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 3.1263 -0.7994 -1.2056 32 1 1.6054 -1.7197 -1.2952 33 1 1.7054 0.1437 -4.4524 34 1 3.1263 -0.7994 1.2055 35 1 1.6054 -1.7199 1.2951 36 1 0.4788 0.4882 4.8429 37 1 2.0003 1.4075 4.7534 38 1 0.2532 -1.4005 6.3440 39 1 1.0192 -2.4786 8.4194 40 1 6.7115 -2.6051 12.2562 41 1 4.6751 -0.2703 8.2064 42 1 3.9049 0.7938 6.1252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609733721.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:32 Heat of formation + Delta-G solvation = -191.537034 kcal Electronic energy + Delta-G solvation = -25522.570018 eV Core-core repulsion = 21433.336821 eV Total energy + Delta-G solvation = -4089.233197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.134 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.92907 -40.41788 -39.27225 -37.48895 -36.83004 -36.25408 -35.42188 -32.53478 -30.97752 -30.36260 -29.61849 -28.13325 -26.22778 -24.70619 -23.22253 -22.20597 -21.32943 -20.57454 -20.08312 -18.47007 -18.01776 -17.79703 -17.46362 -17.10925 -16.55987 -16.46533 -16.13844 -15.12670 -14.84343 -14.71719 -14.12550 -13.92563 -13.87551 -13.80073 -13.47412 -13.19676 -12.92598 -12.77085 -12.62229 -12.48378 -12.28165 -12.17982 -12.04701 -11.56866 -11.51464 -11.43185 -11.18604 -11.04371 -10.85470 -10.80517 -10.78506 -10.50200 -10.32225 -10.21536 -9.48373 -8.95921 -8.37791 -7.49939 -6.50504 -4.17317 1.78990 1.82351 2.03543 2.16708 2.51417 2.98677 3.17247 3.20871 3.34730 4.16102 4.16442 4.38427 4.39509 4.45471 4.72691 4.78024 4.88959 5.00722 5.02472 5.09829 5.12500 5.14506 5.15958 5.32624 5.42761 5.52993 5.56790 5.65683 5.77730 5.91526 6.02415 6.05146 6.21416 6.21793 6.43779 6.53480 6.67001 6.90813 7.10346 7.17591 7.47047 7.48700 7.70158 7.76234 7.93594 8.83917 9.44322 10.56535 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.031353 B = 0.001828 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.840171 B =15316.625585 C =15564.249036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.070 4.070 3 H 0.091 0.909 4 C -0.111 4.111 5 C 0.478 3.522 6 O -0.507 6.507 7 O -0.520 6.520 8 C -0.113 4.113 9 C 0.458 3.542 10 O -0.509 6.509 11 O -0.351 6.351 12 C 0.128 3.872 13 C -0.196 4.196 14 C -0.051 4.051 15 C -0.196 4.196 16 C 0.169 3.831 17 O -0.211 6.211 18 C -0.392 4.392 19 H 0.108 0.892 20 C 0.065 3.935 21 N -0.874 5.874 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.281 1.281 25 H -0.259 1.259 26 C -0.225 4.225 27 C -0.047 4.047 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.410 0.590 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.281 0.719 41 H 0.136 0.864 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.512 1.101 -24.657 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.089 4.089 3 H 0.110 0.890 4 C -0.149 4.149 5 C 0.320 3.680 6 O -0.395 6.395 7 O -0.332 6.332 8 C -0.150 4.150 9 C 0.302 3.698 10 O -0.398 6.398 11 O -0.268 6.268 12 C 0.056 3.944 13 C -0.197 4.197 14 C -0.069 4.069 15 C -0.215 4.215 16 C 0.116 3.884 17 O -0.116 6.116 18 C -0.467 4.467 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.511 5.511 22 Si 0.732 3.268 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.244 4.244 27 C -0.065 4.065 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.269 0.731 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.091 0.909 41 H 0.154 0.846 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.670 1.264 -23.919 25.474 hybrid contribution -0.313 -0.016 0.014 0.313 sum -8.983 1.247 -23.905 25.568 Atomic orbital electron populations 1.22126 0.93730 1.01647 1.04588 1.20800 0.97797 1.00255 0.90036 0.89025 1.21447 1.04225 1.00236 0.88961 1.23458 0.75834 0.83976 0.84715 1.90739 1.37128 1.24674 1.86965 1.84538 1.74941 1.56542 1.17220 1.21435 1.04096 1.00259 0.89260 1.23526 0.76576 0.84347 0.85390 1.90647 1.37321 1.24527 1.87291 1.86646 1.72126 1.53170 1.14883 1.21703 0.99244 0.92863 0.80622 1.18941 0.97680 1.05977 0.97076 1.20512 0.98207 0.94166 0.94016 1.20196 0.96348 1.05967 0.98992 1.19184 0.92738 0.90997 0.85498 1.83572 1.31825 1.62672 1.33488 1.20798 0.86231 1.25756 1.13920 0.87455 1.24494 0.95559 0.97589 0.96306 1.69644 1.13502 1.41914 1.26088 0.86167 0.81277 0.80940 0.78460 1.19775 1.20677 1.18312 1.21267 1.02587 1.02061 0.98502 1.20682 0.93954 0.97250 0.94612 0.93262 0.90513 0.91074 0.87167 0.87173 0.73094 0.87343 0.87334 0.91122 0.91090 0.86712 0.86195 0.90892 0.84635 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 8.68 37.15 0.32 -1.17 16 2 C -0.07 -0.54 1.68 -90.62 -0.15 -0.69 16 3 H 0.09 0.89 7.77 -51.93 -0.40 0.49 16 4 C -0.11 -0.56 5.29 -27.88 -0.15 -0.71 16 5 C 0.48 3.42 8.05 36.01 0.29 3.71 16 6 O -0.51 -5.43 14.73 -18.75 -0.28 -5.70 16 7 O -0.52 -2.65 13.42 -39.25 -0.53 -3.18 16 8 C -0.11 -0.83 5.29 -27.89 -0.15 -0.98 16 9 C 0.46 5.41 7.67 36.00 0.28 5.68 16 10 O -0.51 -7.24 13.72 -18.75 -0.26 -7.50 16 11 O -0.35 -4.77 10.20 -39.27 -0.40 -5.17 16 12 C 0.13 1.80 5.59 36.00 0.20 2.00 16 13 C -0.20 -3.21 5.52 -104.58 -0.58 -3.78 16 14 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 15 C -0.20 -3.73 9.99 -39.39 -0.39 -4.12 16 16 C 0.17 3.77 6.65 -39.10 -0.26 3.51 16 17 O -0.21 -5.41 8.59 0.07 0.00 -5.41 16 18 C -0.39 -10.73 9.95 30.89 0.31 -10.43 16 19 H 0.11 3.00 5.44 -52.49 -0.29 2.71 16 20 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 21 N -0.87 -24.63 13.96 55.48 0.77 -23.86 16 22 Si 0.91 21.09 28.62 -169.99 -4.86 16.22 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.26 -6.05 7.11 56.52 0.40 -5.64 16 26 C -0.23 -4.69 9.17 -39.39 -0.36 -5.05 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.21 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.08 0.87 5.96 -51.93 -0.31 0.56 16 30 H 0.07 0.73 5.96 -51.93 -0.31 0.42 16 31 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 0.57 9.10 45.56 0.41 0.98 16 34 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.92 8.07 -51.93 -0.42 0.51 16 37 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 39 H 0.12 2.11 8.06 -52.49 -0.42 1.68 16 40 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.14 2.95 5.64 -52.49 -0.30 2.66 16 42 H 0.11 1.70 8.06 -52.48 -0.42 1.28 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -33.11 362.16 -6.14 -39.25 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -4.54 Total: 2.68 kcal Atomic # 6 Polarization: -11.29 SS G_CDS: -1.51 Total: -12.79 kcal Atomic # 7 Polarization: -24.63 SS G_CDS: 0.77 Total: -23.86 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -1.46 Total: -26.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -4.86 Total: 16.22 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.11 -6.14 -39.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609733721.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.282 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds