Wall clock time and date at job start Tue Mar 31 2020 13:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34780 * 119.99917 * 2 1 4 4 O 1.21281 * 119.99912 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99788 * 0.02562 * 3 2 1 6 6 C 1.53009 * 109.46878 * 179.97438 * 5 3 2 7 7 C 1.50700 * 109.46990 * 179.97438 * 6 5 3 8 8 C 1.38261 * 119.99571 * 269.72484 * 7 6 5 9 9 C 1.38215 * 120.02577 * 179.77072 * 8 7 6 10 10 C 1.38242 * 120.01454 * 0.50610 * 9 8 7 11 11 C 1.38339 * 119.98342 * 359.74706 * 10 9 8 12 12 Cl 1.73593 * 120.01030 * 180.02562 * 11 10 9 13 13 C 1.38193 * 119.99068 * 90.00125 * 7 6 5 14 14 C 1.46500 * 120.00029 * 179.97438 * 2 1 3 15 15 C 1.53495 * 114.20561 * 300.00547 * 14 2 1 16 16 N 1.47064 * 87.98647 * 87.71568 * 15 14 2 17 17 C 1.36929 * 136.05710 * 207.07951 * 16 15 14 18 18 H 1.07999 * 119.99951 * 6.59244 * 17 16 15 19 19 C 1.38814 * 120.00235 * 186.58664 * 17 16 15 20 20 N 1.31623 * 119.99693 * 6.44554 * 19 17 16 21 21 Si 1.86801 * 120.00252 * 186.44323 * 19 17 16 22 22 H 1.48499 * 109.47145 * 265.01845 * 21 19 17 23 23 H 1.48505 * 109.46919 * 25.01982 * 21 19 17 24 24 H 1.48500 * 109.47291 * 145.01868 * 21 19 17 25 25 C 1.47067 * 87.88549 * 27.33957 * 16 15 14 26 26 H 1.08997 * 109.47514 * 269.99815 * 1 2 3 27 27 H 1.09000 * 109.47138 * 30.00129 * 1 2 3 28 28 H 1.09000 * 109.46764 * 149.99697 * 1 2 3 29 29 H 1.08992 * 109.47159 * 299.99430 * 5 3 2 30 30 H 1.08993 * 109.47408 * 59.99902 * 5 3 2 31 31 H 1.09002 * 109.46977 * 300.00308 * 6 5 3 32 32 H 1.09003 * 109.46962 * 60.00045 * 6 5 3 33 33 H 1.08000 * 119.98450 * 359.97438 * 8 7 6 34 34 H 1.07997 * 119.99464 * 180.25570 * 9 8 7 35 35 H 1.08000 * 120.00974 * 179.76627 * 10 9 8 36 36 H 1.08008 * 120.00755 * 359.95430 * 13 7 6 37 37 H 1.08998 * 113.27803 * 166.93076 * 14 2 1 38 38 H 1.08996 * 113.46596 * 332.93466 * 15 14 2 39 39 H 1.09007 * 113.51449 * 202.50716 * 15 14 2 40 40 H 0.97002 * 119.99786 * 179.97438 * 20 19 17 41 41 H 1.09005 * 113.46771 * 87.43754 * 25 16 15 42 42 H 1.09002 * 113.46911 * 217.87594 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3796 3.6353 0.0011 7 6 1.6261 4.9404 0.0011 8 6 1.2858 5.5421 -1.1964 9 6 0.5906 6.7366 -1.1972 10 6 0.2441 7.3359 -0.0006 11 6 0.5888 6.7370 1.1979 12 17 0.1535 7.4885 2.7009 13 6 1.2803 5.5384 1.1979 14 6 2.1975 -1.2687 0.0006 15 6 1.9059 -2.1633 1.2133 16 7 0.7772 -2.7291 0.4592 17 6 -0.4240 -3.3086 0.7691 18 1 -0.7630 -3.3335 1.7942 19 6 -1.2062 -3.8640 -0.2342 20 7 -0.7395 -3.9479 -1.4620 21 14 -2.9211 -4.4923 0.1581 22 1 -2.8633 -5.9506 0.4322 23 1 -3.4462 -3.7843 1.3533 24 1 -3.8171 -4.2412 -0.9992 25 6 1.5094 -2.4046 -0.7743 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 0.7584 2.5303 -0.8891 30 1 0.7590 2.5299 0.8907 31 1 3.0063 3.5771 0.8911 32 1 3.0063 3.5780 -0.8889 33 1 1.5606 5.0767 -2.1315 34 1 0.3215 7.2040 -2.1328 35 1 -0.2959 8.2712 -0.0013 36 1 1.5494 5.0702 2.1333 37 1 3.2575 -1.1542 -0.2259 38 1 1.6005 -1.6070 2.0995 39 1 2.6953 -2.8858 1.4206 40 1 -1.2859 -4.3363 -2.1631 41 1 2.1947 -3.1906 -1.0918 42 1 0.8662 -2.0540 -1.5815 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754579108.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:42 Heat of formation + Delta-G solvation = 26.643756 kcal Electronic energy + Delta-G solvation = -24205.888694 eV Core-core repulsion = 20599.118441 eV Total energy + Delta-G solvation = -3606.770253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.37428 -40.36025 -39.33977 -37.46106 -35.58548 -34.93462 -34.03651 -31.67463 -30.84061 -29.68334 -27.64187 -26.39031 -26.20200 -24.59384 -23.59700 -22.31984 -21.25332 -19.69124 -18.76052 -18.23993 -17.61118 -17.09593 -17.00343 -16.69723 -16.28540 -16.25558 -15.63767 -15.31417 -14.82801 -14.60423 -14.48769 -14.41732 -14.26699 -13.71989 -13.63619 -13.40358 -13.24971 -13.03629 -12.77796 -12.65299 -12.54074 -12.42445 -12.35002 -12.20466 -11.98498 -11.86603 -11.74544 -11.69720 -11.31610 -10.98568 -10.70598 -9.83420 -9.60223 -9.47577 -8.91827 -7.90489 -5.22399 0.21158 0.32128 1.17950 1.48778 1.49795 1.58816 1.65882 2.07170 2.48495 2.68936 3.31802 3.44070 3.52564 3.78850 3.88603 3.96238 4.11201 4.16014 4.23365 4.36300 4.40280 4.45945 4.50251 4.54064 4.68234 4.71718 4.76843 4.83460 4.91238 4.97435 5.01063 5.07957 5.18407 5.21644 5.29508 5.32433 5.42447 5.47422 5.61249 5.72317 5.88921 5.89256 6.59354 6.91351 7.22140 7.60389 8.60846 9.27790 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.016175 B = 0.002567 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.696122 B =10904.432551 C =11579.340918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.582 5.582 3 C 0.510 3.490 4 O -0.584 6.584 5 C -0.122 4.122 6 C -0.057 4.057 7 C -0.071 4.071 8 C -0.115 4.115 9 C -0.103 4.103 10 C -0.121 4.121 11 C -0.046 4.046 12 Cl -0.079 7.079 13 C -0.118 4.118 14 C 0.103 3.897 15 C 0.106 3.894 16 N -0.625 5.625 17 C -0.221 4.221 18 H 0.083 0.917 19 C -0.057 4.057 20 N -0.950 5.950 21 Si 0.973 3.027 22 H -0.294 1.294 23 H -0.266 1.266 24 H -0.293 1.293 25 C 0.156 3.844 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.065 0.935 29 H 0.113 0.887 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.028 0.972 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.796 23.810 1.567 23.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.313 5.313 3 C 0.301 3.699 4 O -0.465 6.465 5 C -0.162 4.162 6 C -0.095 4.095 7 C -0.072 4.072 8 C -0.133 4.133 9 C -0.121 4.121 10 C -0.139 4.139 11 C -0.072 4.072 12 Cl -0.050 7.050 13 C -0.136 4.136 14 C -0.003 4.003 15 C -0.020 4.020 16 N -0.351 5.351 17 C -0.349 4.349 18 H 0.100 0.900 19 C -0.251 4.251 20 N -0.599 5.599 21 Si 0.801 3.199 22 H -0.221 1.221 23 H -0.190 1.190 24 H -0.220 1.220 25 C 0.029 3.971 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.125 0.875 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.164 0.836 36 H 0.151 0.849 37 H 0.124 0.876 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.047 23.715 1.671 23.861 hybrid contribution -0.858 -1.136 0.312 1.458 sum 1.189 22.578 1.982 22.696 Atomic orbital electron populations 1.21762 0.77973 1.03414 1.01977 1.47479 1.07775 1.04629 1.71392 1.21275 0.87750 0.85988 0.74920 1.90639 1.15459 1.88021 1.52371 1.21666 0.99054 0.89313 1.06129 1.20252 0.96070 0.88876 1.04289 1.19828 0.98261 0.96245 0.92835 1.21477 0.97775 0.95773 0.98248 1.21436 0.97080 0.95155 0.98442 1.21327 1.00749 1.01194 0.90661 1.21076 1.02663 0.95973 0.87515 1.98371 1.91905 1.81797 1.32906 1.21079 0.98953 0.94395 0.99221 1.22380 0.95858 0.83796 0.98249 1.22929 0.89974 0.93747 0.95354 1.46043 1.14685 1.70869 1.03517 1.19207 0.92184 1.29727 0.93766 0.89969 1.25519 1.02395 1.01400 0.95773 1.70014 1.37589 1.50941 1.01322 0.85151 0.79835 0.77717 0.77156 1.22120 1.19041 1.21995 1.22292 0.91855 0.91683 0.91278 0.93031 0.89216 0.91665 0.86909 0.87502 0.90857 0.90100 0.83758 0.82493 0.83614 0.84862 0.87649 0.93439 0.93154 0.94240 0.95432 0.93937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.96 9.35 127.77 1.19 4.16 16 2 N -0.58 -19.69 3.12 -821.40 -2.56 -22.25 16 3 C 0.51 15.51 7.67 87.66 0.67 16.18 16 4 O -0.58 -21.21 15.49 -3.03 -0.05 -21.26 16 5 C -0.12 -2.53 4.24 29.85 0.13 -2.41 16 6 C -0.06 -1.10 4.63 29.85 0.14 -0.97 16 7 C -0.07 -1.21 5.13 -19.87 -0.10 -1.31 16 8 C -0.11 -1.63 9.70 22.27 0.22 -1.41 16 9 C -0.10 -1.26 10.05 22.27 0.22 -1.04 16 10 C -0.12 -1.70 9.83 22.29 0.22 -1.48 16 11 C -0.05 -0.79 6.32 22.32 0.14 -0.65 16 12 Cl -0.08 -1.36 28.96 -2.72 -0.08 -1.44 16 13 C -0.12 -2.09 9.49 22.29 0.21 -1.88 16 14 C 0.10 3.94 4.67 45.55 0.21 4.16 16 15 C 0.11 4.30 8.31 83.18 0.69 5.00 16 16 N -0.62 -30.34 2.48 -738.03 -1.83 -32.17 16 17 C -0.22 -11.66 10.35 84.04 0.87 -10.79 16 18 H 0.08 4.20 7.84 -2.91 -0.02 4.18 16 19 C -0.06 -3.09 5.50 84.86 0.47 -2.62 16 20 N -0.95 -54.75 11.81 21.65 0.26 -54.49 16 21 Si 0.97 43.62 29.56 68.60 2.03 45.64 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 23 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 24 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 25 C 0.16 7.15 6.26 83.27 0.52 7.67 16 26 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.09 2.19 6.44 -2.39 -0.02 2.18 16 28 H 0.06 2.73 5.41 -2.39 -0.01 2.72 16 29 H 0.11 1.97 7.40 -2.39 -0.02 1.95 16 30 H 0.11 1.98 8.11 -2.39 -0.02 1.97 16 31 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 32 H 0.08 1.62 8.04 -2.39 -0.02 1.60 16 33 H 0.14 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 36 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 37 H 0.11 3.93 7.29 -2.39 -0.02 3.91 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 40 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 41 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.04 2.14 6.73 -2.39 -0.02 2.12 16 Total: -1.00 -65.05 362.64 4.59 -60.46 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 1.02 Total: 12.92 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 5.80 Total: 12.59 kcal Atomic # 7 Polarization: -104.78 SS G_CDS: -4.13 Total: -108.91 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.08 Total: -1.44 kcal Total: -65.05 4.59 -60.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754579108.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.100 kcal (2) G-P(sol) polarization free energy of solvation -65.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds