Wall clock time and date at job start Tue Mar 31 2020 13:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86808 * 119.99844 * 2 1 4 4 H 1.48507 * 109.46825 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47189 * 119.99695 * 3 2 1 6 6 H 1.48496 * 109.46987 * 240.00107 * 3 2 1 7 7 C 1.38806 * 120.00674 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00355 * 154.67230 * 7 2 1 9 9 N 1.36940 * 119.99574 * 334.67582 * 7 2 1 10 10 C 1.47164 * 120.71037 * 154.62678 * 9 7 2 11 11 C 1.53880 * 108.03144 * 132.75343 * 10 9 7 12 12 H 1.08997 * 112.09722 * 181.90620 * 11 10 9 13 13 C 1.54538 * 107.83284 * 306.50519 * 11 10 9 14 14 C 1.54273 * 104.85340 * 89.07355 * 13 11 10 15 15 C 1.54550 * 104.84960 * 359.97438 * 14 13 11 16 16 H 1.09000 * 112.18213 * 146.40616 * 15 14 13 17 17 C 1.47170 * 120.70926 * 334.34272 * 9 7 2 18 18 N 1.48313 * 107.20937 * 58.36529 * 11 10 9 19 19 C 1.34771 * 128.08351 * 106.69597 * 18 11 10 20 20 O 1.21573 * 119.99783 * 354.46577 * 19 18 11 21 21 C 1.47696 * 120.00165 * 174.45562 * 19 18 11 22 22 C 1.39679 * 120.15533 * 27.96228 * 21 19 18 23 23 C 1.37852 * 119.92449 * 179.76497 * 22 21 19 24 24 C 1.38437 * 120.23992 * 0.50928 * 23 22 21 25 25 C 1.38382 * 120.31789 * 359.74209 * 24 23 22 26 26 F 1.35102 * 119.96776 * 180.02562 * 25 24 23 27 27 C 1.38543 * 120.06751 * 0.02562 * 25 24 23 28 28 F 1.35106 * 120.11750 * 179.97438 * 27 25 24 29 29 H 0.96999 * 119.99271 * 174.15655 * 1 2 3 30 30 H 1.08999 * 109.74251 * 252.38774 * 10 9 7 31 31 H 1.08999 * 109.74852 * 13.06781 * 10 9 7 32 32 H 1.09009 * 110.36606 * 207.91843 * 13 11 10 33 33 H 1.09003 * 110.36627 * 330.22579 * 13 11 10 34 34 H 1.09003 * 110.36669 * 241.15495 * 14 13 11 35 35 H 1.09002 * 110.45984 * 118.88411 * 14 13 11 36 36 H 1.09001 * 109.74770 * 346.87835 * 17 9 7 37 37 H 1.08995 * 109.74547 * 107.60908 * 17 9 7 38 38 H 1.08005 * 120.03987 * 0.02562 * 22 21 19 39 39 H 1.07996 * 119.87572 * 180.25255 * 23 22 21 40 40 H 1.08008 * 119.84539 * 179.71826 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7465 -0.0006 5 1 3.1039 1.6966 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0125 -1.2471 -0.3995 9 7 1.4245 -2.3307 0.5083 10 6 1.8445 -3.6656 0.0528 11 6 2.0569 -4.5480 1.2955 12 1 2.4033 -5.5478 1.0340 13 6 3.0304 -3.8081 2.2405 14 6 2.1262 -2.9359 3.1359 15 6 0.6882 -3.2275 2.6501 16 1 -0.0365 -3.1897 3.4634 17 6 0.3655 -2.2351 1.5258 18 7 0.7734 -4.5761 2.0382 19 6 -0.1094 -5.5899 2.1342 20 8 0.0583 -6.6052 1.4869 21 6 -1.2804 -5.4675 3.0260 22 6 -1.8190 -4.2100 3.3082 23 6 -2.9150 -4.1017 4.1373 24 6 -3.4780 -5.2342 4.7002 25 6 -2.9493 -6.4845 4.4315 26 9 -3.5047 -7.5850 4.9843 27 6 -1.8510 -6.6088 3.5963 28 9 -1.3336 -7.8289 3.3337 29 1 -0.4849 -0.8357 -0.0855 30 1 1.0698 -4.0996 -0.5792 31 1 2.7760 -3.5872 -0.5078 32 1 3.5879 -4.5228 2.8461 33 1 3.7136 -3.1818 1.6668 34 1 2.3646 -1.8807 3.0024 35 1 2.2382 -3.2200 4.1823 36 1 0.3316 -1.2225 1.9280 37 1 -0.5968 -2.4877 1.0807 38 1 -1.3799 -3.3239 2.8741 39 1 -3.3333 -3.1294 4.3517 40 1 -4.3339 -5.1415 5.3525 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017861677.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:20 Heat of formation + Delta-G solvation = -59.313254 kcal Electronic energy + Delta-G solvation = -28263.445440 eV Core-core repulsion = 24101.151131 eV Total energy + Delta-G solvation = -4162.294308 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.64903 -49.72626 -42.10265 -40.09295 -39.02840 -36.29263 -33.84855 -32.58388 -32.33837 -31.80374 -31.24725 -28.10015 -25.91184 -25.48362 -24.32865 -24.03599 -22.57545 -21.74120 -20.31491 -19.73471 -18.82149 -18.56484 -18.18233 -17.70040 -17.36698 -16.92035 -16.54173 -16.19578 -16.08042 -15.87857 -15.68833 -15.57983 -15.44710 -15.19599 -14.58995 -14.45362 -14.21832 -13.82673 -13.66031 -13.40926 -13.14680 -13.07809 -12.88931 -12.84061 -12.55020 -12.21057 -12.08703 -11.85287 -11.68854 -11.44811 -11.28001 -11.15800 -10.50838 -10.32746 -10.00171 -9.90979 -8.91253 -8.20481 -5.35822 -0.59565 -0.26606 1.45945 1.62841 1.66762 1.71133 1.90286 2.28216 2.58134 2.68131 3.02016 3.19802 3.22026 3.37251 3.53010 3.65339 3.69638 3.79340 3.92091 3.99470 4.05764 4.20494 4.28876 4.40653 4.48708 4.60426 4.65892 4.71931 4.77575 4.85188 4.91359 4.93317 5.01981 5.03996 5.06272 5.18190 5.20910 5.48685 5.54011 5.84257 6.37545 6.41802 6.84513 6.99982 7.75939 8.19123 9.03822 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.020141 B = 0.004114 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.844854 B = 6804.702553 C = 7589.020258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.067 4.067 3 Si 1.111 2.889 4 H -0.295 1.295 5 H -0.273 1.273 6 H -0.285 1.285 7 C -0.349 4.349 8 H 0.055 0.945 9 N -0.602 5.602 10 C 0.139 3.861 11 C 0.118 3.882 12 H 0.094 0.906 13 C -0.103 4.103 14 C -0.109 4.109 15 C 0.094 3.906 16 H 0.136 0.864 17 C 0.155 3.845 18 N -0.598 5.598 19 C 0.567 3.433 20 O -0.579 6.579 21 C -0.151 4.151 22 C -0.085 4.085 23 C -0.083 4.083 24 C -0.080 4.080 25 C 0.054 3.946 26 F -0.131 7.131 27 C 0.090 3.910 28 F -0.133 7.133 29 H 0.253 0.747 30 H -0.008 1.008 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.000 1.000 38 H 0.158 0.842 39 H 0.192 0.808 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -5.379 14.170 15.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.264 4.264 3 Si 0.937 3.063 4 H -0.221 1.221 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.478 4.478 8 H 0.073 0.927 9 N -0.327 5.327 10 C 0.013 3.987 11 C 0.014 3.986 12 H 0.112 0.888 13 C -0.141 4.141 14 C -0.147 4.147 15 C -0.009 4.009 16 H 0.153 0.847 17 C 0.028 3.972 18 N -0.329 5.329 19 C 0.357 3.643 20 O -0.461 6.461 21 C -0.155 4.155 22 C -0.104 4.104 23 C -0.100 4.100 24 C -0.098 4.098 25 C 0.034 3.966 26 F -0.109 7.109 27 C 0.068 3.932 28 F -0.112 7.112 29 H 0.063 0.937 30 H 0.010 0.990 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.018 0.982 38 H 0.175 0.825 39 H 0.209 0.791 40 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -3.975 -4.425 13.886 15.106 hybrid contribution 0.179 -2.544 -1.048 2.758 sum -3.795 -6.969 12.838 15.093 Atomic orbital electron populations 1.70936 1.07453 1.29260 1.50619 1.27000 0.96468 1.04271 0.98612 0.82887 0.73834 0.72367 0.77243 1.22146 1.19868 1.21187 1.20187 0.97521 0.89074 1.41029 0.92699 1.44251 1.43816 1.00975 1.43635 1.21482 0.97709 0.85892 0.93621 1.22856 0.83403 0.99124 0.93193 0.88804 1.22259 0.96762 0.98133 0.96966 1.22338 0.92203 1.00917 0.99239 1.23605 1.00589 0.80257 0.96454 0.84736 1.21292 0.89535 0.97742 0.88595 1.49129 1.20940 1.13353 1.49450 1.17988 0.82443 0.81970 0.81903 1.90773 1.76538 1.31214 1.47566 1.19767 0.99012 0.94201 1.02504 1.22125 0.96209 0.95319 0.96719 1.21578 0.93356 1.00901 0.94194 1.21767 1.00768 0.88088 0.99176 1.17730 0.94444 0.85564 0.98903 1.91532 1.83965 1.51970 1.83480 1.17949 0.95235 0.80183 0.99790 1.91528 1.86044 1.41082 1.92525 0.93705 0.98973 0.91237 0.90064 0.90566 0.90644 0.89310 0.90846 0.98227 0.82526 0.79073 0.78911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.73 12.47 21.65 0.27 -52.46 16 2 C -0.07 -3.47 4.70 84.86 0.40 -3.07 16 3 Si 1.11 46.76 29.99 68.60 2.06 48.81 16 4 H -0.30 -12.83 7.11 99.48 0.71 -12.13 16 5 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.29 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.35 -17.77 9.54 84.03 0.80 -16.97 16 8 H 0.06 2.81 7.93 -2.91 -0.02 2.79 16 9 N -0.60 -27.58 2.17 -696.14 -1.51 -29.09 16 10 C 0.14 5.85 6.02 86.55 0.52 6.37 16 11 C 0.12 4.19 4.11 45.46 0.19 4.38 16 12 H 0.09 3.31 7.96 -2.39 -0.02 3.29 16 13 C -0.10 -3.07 6.18 31.55 0.20 -2.88 16 14 C -0.11 -3.13 6.18 31.55 0.20 -2.93 16 15 C 0.09 2.95 2.98 45.30 0.14 3.08 16 16 H 0.14 3.33 4.83 -2.39 -0.01 3.32 16 17 C 0.15 6.34 3.63 86.38 0.31 6.65 16 18 N -0.60 -21.04 2.75 -760.81 -2.09 -23.13 16 19 C 0.57 21.47 7.63 86.74 0.66 22.14 16 20 O -0.58 -26.31 16.18 -3.95 -0.06 -26.38 16 21 C -0.15 -4.58 5.77 -20.06 -0.12 -4.69 16 22 C -0.09 -1.94 8.00 22.53 0.18 -1.76 16 23 C -0.08 -1.17 10.03 22.23 0.22 -0.95 16 24 C -0.08 -1.11 10.01 22.35 0.22 -0.89 16 25 C 0.05 1.21 7.30 22.38 0.16 1.38 16 26 F -0.13 -3.10 17.18 44.97 0.77 -2.33 16 27 C 0.09 2.69 7.25 22.71 0.16 2.85 16 28 F -0.13 -4.80 15.85 44.97 0.71 -4.09 16 29 H 0.25 14.59 6.50 -92.71 -0.60 13.99 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.08 2.44 7.84 -2.39 -0.02 2.42 16 34 H 0.07 2.44 7.83 -2.39 -0.02 2.42 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 3.27 6.56 -2.39 -0.02 3.26 16 37 H 0.00 0.00 7.13 -2.39 -0.02 -0.02 16 38 H 0.16 3.78 4.00 -2.91 -0.01 3.77 16 39 H 0.19 1.22 8.06 -2.91 -0.02 1.19 16 40 H 0.19 1.12 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -70.47 326.31 5.66 -64.81 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 1.26 Total: 11.15 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 4.25 Total: 12.71 kcal Atomic # 7 Polarization: -101.36 SS G_CDS: -3.33 Total: -104.68 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 9 Polarization: -7.90 SS G_CDS: 1.49 Total: -6.42 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.06 Total: 48.81 kcal Total: -70.47 5.66 -64.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017861677.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.498 kcal (2) G-P(sol) polarization free energy of solvation -70.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds