Wall clock time and date at job start Tue Mar 31 2020 13:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38618 * 120.40374 * 2 1 4 4 C 1.38588 * 118.55776 * 179.97438 * 3 2 1 5 5 N 1.32281 * 119.19866 * 359.73148 * 4 3 2 6 6 C 1.32487 * 120.74172 * 0.54360 * 5 4 3 7 7 N 1.38398 * 119.21820 * 179.72075 * 6 5 4 8 8 C 1.48529 * 110.99916 * 242.33666 * 7 6 5 9 9 C 1.54943 * 103.23110 * 159.72127 * 8 7 6 10 10 C 1.54593 * 102.91873 * 322.58517 * 9 8 7 11 11 H 1.09005 * 110.30819 * 263.04149 * 10 9 8 12 12 N 1.46494 * 110.31183 * 140.87088 * 10 9 8 13 13 C 1.34776 * 120.00248 * 157.82554 * 12 10 9 14 14 O 1.21285 * 119.99910 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00418 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47484 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00012 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00344 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99696 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00262 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47375 * 89.99782 * 21 19 17 23 23 H 1.48499 * 109.47220 * 209.99563 * 21 19 17 24 24 H 1.48504 * 109.47325 * 329.99808 * 21 19 17 25 25 C 1.47906 * 111.00161 * 359.72876 * 7 6 5 26 26 N 1.32264 * 120.39673 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47631 * 270.02194 * 1 2 3 28 28 H 1.09008 * 109.47479 * 30.02082 * 1 2 3 29 29 H 1.09004 * 109.47631 * 150.02224 * 1 2 3 30 30 H 1.08005 * 120.72031 * 0.02562 * 3 2 1 31 31 H 1.08008 * 120.39605 * 179.97438 * 4 3 2 32 32 H 1.08995 * 110.67216 * 41.28614 * 8 7 6 33 33 H 1.09004 * 110.80922 * 278.21791 * 8 7 6 34 34 H 1.08999 * 110.72722 * 204.22642 * 9 8 7 35 35 H 1.08997 * 110.72276 * 80.93671 * 9 8 7 36 36 H 0.97000 * 120.00490 * 337.83354 * 12 10 9 37 37 H 1.09004 * 109.47195 * 300.00801 * 15 13 12 38 38 H 1.08999 * 109.46938 * 59.99837 * 15 13 12 39 39 H 0.96998 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.91583 * 94.80689 * 25 7 6 41 41 H 1.09004 * 109.91554 * 333.51272 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1955 0.0000 4 6 3.5936 1.1509 0.0005 5 7 4.2014 -0.0240 0.0065 6 6 3.5013 -1.1487 0.0010 7 7 4.1696 -2.3606 0.0016 8 6 3.8685 -3.1351 -1.2295 9 6 5.0451 -4.1398 -1.3131 10 6 6.2495 -3.3030 -0.8240 11 1 6.8018 -2.9021 -1.6739 12 7 7.1290 -4.1202 0.0155 13 6 8.4199 -3.7696 0.1804 14 8 8.8533 -2.7773 -0.3660 15 6 9.3248 -4.6105 1.0435 16 16 10.9827 -3.8844 1.0663 17 6 11.8063 -5.0353 2.1160 18 1 11.2659 -5.8764 2.5243 19 6 13.1494 -4.8601 2.4189 20 7 13.8080 -3.8346 1.9217 21 14 14.0225 -6.0798 3.5323 22 1 14.6058 -7.1706 2.7106 23 1 15.1056 -5.3856 4.2740 24 1 13.0502 -6.6530 4.4974 25 6 5.6347 -2.1579 0.0021 26 7 2.1762 -1.1408 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6869 2.1413 0.0004 31 1 4.1699 2.0644 0.0001 32 1 3.8577 -2.4819 -2.1020 33 1 2.9191 -3.6619 -1.1331 34 1 5.1973 -4.4710 -2.3403 35 1 4.8734 -4.9905 -0.6538 36 1 6.7824 -4.9137 0.4527 37 1 8.9296 -4.6450 2.0588 38 1 9.3761 -5.6214 0.6392 39 1 14.7466 -3.7120 2.1338 40 1 6.0139 -2.1918 1.0234 41 1 5.8770 -1.1985 -0.4552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096329313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:31 Heat of formation + Delta-G solvation = 34.734266 kcal Electronic energy + Delta-G solvation = -23681.136098 eV Core-core repulsion = 20109.053134 eV Total energy + Delta-G solvation = -3572.082964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.60379 -39.76752 -38.28533 -34.92621 -34.37828 -32.56348 -32.40814 -30.51198 -29.67848 -28.57702 -27.68714 -25.46013 -24.24915 -23.39480 -21.71834 -21.06721 -20.13534 -18.17839 -17.77265 -17.52672 -16.66981 -16.26798 -15.92751 -15.50813 -15.06498 -14.79113 -14.71771 -14.64980 -14.12432 -13.81719 -13.66505 -13.23494 -13.08280 -12.86258 -12.76152 -12.66631 -12.56434 -12.15119 -12.03231 -11.67478 -11.26295 -11.04806 -11.00972 -10.96724 -10.87817 -10.74364 -10.27644 -9.79778 -9.46541 -9.37828 -9.05497 -8.92578 -8.69748 -8.21502 -6.47817 -6.19935 -3.90202 0.62735 0.80969 2.87846 3.05256 3.09129 3.23715 3.29198 3.33434 3.40820 3.68828 3.81459 4.13335 4.22048 4.22602 4.42433 4.48230 4.74970 4.80621 4.82184 5.03503 5.04039 5.09117 5.13527 5.15251 5.23108 5.36965 5.40203 5.49049 5.53946 5.62527 5.63646 5.82695 5.83850 5.91977 6.08085 6.16790 6.25017 6.49540 6.65825 6.96310 7.61459 7.71851 7.87850 8.37094 8.62315 9.25427 10.87469 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.002175 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.110201 B =12870.787468 C =13284.522675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.196 3.804 3 C -0.262 4.262 4 C 0.176 3.824 5 N -0.550 5.550 6 C 0.491 3.509 7 N -0.446 5.446 8 C 0.058 3.942 9 C -0.130 4.130 10 C 0.139 3.861 11 H 0.100 0.900 12 N -0.729 5.729 13 C 0.532 3.468 14 O -0.515 6.515 15 C -0.153 4.153 16 S -0.060 6.060 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.029 3.971 26 N -0.528 5.528 27 H 0.086 0.914 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.170 0.830 32 H 0.055 0.945 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.268 0.732 40 H 0.092 0.908 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.145 5.525 -6.469 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.047 3.953 3 C -0.286 4.286 4 C 0.009 3.991 5 N -0.270 5.270 6 C 0.135 3.865 7 N -0.166 5.166 8 C -0.068 4.068 9 C -0.169 4.169 10 C 0.032 3.968 11 H 0.118 0.882 12 N -0.384 5.384 13 C 0.319 3.681 14 O -0.389 6.389 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.208 1.208 24 H -0.197 1.197 25 C -0.099 4.099 26 N -0.247 5.247 27 H 0.104 0.896 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.164 0.836 31 H 0.187 0.813 32 H 0.073 0.927 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.235 0.765 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.078 0.922 40 H 0.111 0.889 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -26.887 6.075 -6.926 28.422 hybrid contribution -0.292 -0.982 1.212 1.587 sum -27.179 5.093 -5.714 28.237 Atomic orbital electron populations 1.20786 0.87722 1.04017 1.03768 1.21615 0.97402 0.87696 0.88539 1.22595 0.96498 1.00378 1.09080 1.23133 0.92109 0.95672 0.88186 1.68373 1.41259 0.98854 1.18501 1.21216 0.86532 0.89226 0.89504 1.61280 1.08294 1.10973 1.36040 1.23179 1.00239 0.94913 0.88495 1.22868 0.92882 0.98211 1.02912 1.21719 0.90626 0.90839 0.93606 0.88169 1.46084 1.10166 1.30047 1.52085 1.20356 0.81467 0.85420 0.80892 1.90709 1.74570 1.26358 1.47250 1.23533 1.02905 1.02654 1.01307 1.85394 0.96433 1.36505 1.65011 1.22870 0.97938 1.13114 1.34398 0.90923 1.24995 0.96391 0.96034 0.96215 1.70020 1.09960 1.27791 1.42526 0.86167 0.79015 0.80311 0.79999 1.20286 1.20773 1.19698 1.23514 0.82996 1.00195 1.03170 1.67867 1.07981 1.30608 1.18211 0.89591 0.90039 0.89919 0.83629 0.81325 0.92678 0.88234 0.89274 0.89367 0.76527 0.89174 0.89184 0.92207 0.88917 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.54 10.22 36.00 0.37 -0.17 16 2 C 0.20 1.74 6.82 -82.27 -0.56 1.17 16 3 C -0.26 -1.99 9.85 -39.31 -0.39 -2.38 16 4 C 0.18 1.63 11.30 -17.23 -0.19 1.44 16 5 N -0.55 -6.98 8.15 -13.93 -0.11 -7.09 16 6 C 0.49 6.32 6.98 -322.81 -2.25 4.06 16 7 N -0.45 -5.46 5.35 -171.42 -0.92 -6.38 16 8 C 0.06 0.54 6.31 -1.90 -0.01 0.53 16 9 C -0.13 -1.11 6.77 -24.87 -0.17 -1.28 16 10 C 0.14 1.68 3.29 -66.58 -0.22 1.46 16 11 H 0.10 1.36 7.65 -51.93 -0.40 0.96 16 12 N -0.73 -9.76 5.03 -52.49 -0.26 -10.02 16 13 C 0.53 9.89 7.84 -10.99 -0.09 9.81 16 14 O -0.52 -11.62 15.56 5.55 0.09 -11.53 16 15 C -0.15 -3.10 6.16 36.01 0.22 -2.88 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 21 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 25 C 0.03 0.39 6.13 -2.75 -0.02 0.37 16 26 N -0.53 -6.20 10.15 -10.15 -0.10 -6.30 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.08 0.24 8.10 -51.92 -0.42 -0.18 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 31 H 0.17 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.05 0.52 7.99 -51.93 -0.42 0.10 16 33 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 0.67 7.74 -51.93 -0.40 0.27 16 36 H 0.40 4.23 8.35 -40.82 -0.34 3.89 16 37 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 39 H 0.27 7.55 8.31 -40.82 -0.34 7.22 16 40 H 0.09 1.41 7.92 -51.93 -0.41 0.99 16 41 H 0.09 1.36 6.47 -51.93 -0.34 1.02 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -36.68 360.85 -11.14 -47.82 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.65 Total: 1.87 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.11 Total: -0.90 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.66 Total: -55.38 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.68 -11.14 -47.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096329313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.550 kcal (2) G-P(sol) polarization free energy of solvation -36.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds