Wall clock time and date at job start Tue Mar 31 2020 13:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38618 * 120.40374 * 2 1 4 4 C 1.38588 * 118.55776 * 179.97438 * 3 2 1 5 5 N 1.32281 * 119.19866 * 359.73148 * 4 3 2 6 6 C 1.32487 * 120.74172 * 0.54360 * 5 4 3 7 7 N 1.38398 * 119.21820 * 179.72075 * 6 5 4 8 8 C 1.48529 * 110.99916 * 242.33666 * 7 6 5 9 9 C 1.54943 * 103.23110 * 159.72127 * 8 7 6 10 10 C 1.54593 * 102.91873 * 322.58517 * 9 8 7 11 11 H 1.09005 * 110.30819 * 263.04149 * 10 9 8 12 12 N 1.46494 * 110.31183 * 140.87088 * 10 9 8 13 13 C 1.34776 * 120.00248 * 157.82554 * 12 10 9 14 14 O 1.21285 * 119.99910 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00418 * 180.02562 * 13 12 10 16 16 S 1.80999 * 109.47484 * 180.02562 * 15 13 12 17 17 C 1.76200 * 100.00012 * 180.02562 * 16 15 13 18 18 H 1.07995 * 120.00344 * 359.97438 * 17 16 15 19 19 C 1.38798 * 119.99696 * 180.02562 * 17 16 15 20 20 N 1.31632 * 120.00262 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99782 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47375 * 89.99782 * 21 19 17 23 23 H 1.48499 * 109.47220 * 209.99563 * 21 19 17 24 24 H 1.48504 * 109.47325 * 329.99808 * 21 19 17 25 25 C 1.47906 * 111.00161 * 359.72876 * 7 6 5 26 26 N 1.32264 * 120.39673 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47631 * 270.02194 * 1 2 3 28 28 H 1.09008 * 109.47479 * 30.02082 * 1 2 3 29 29 H 1.09004 * 109.47631 * 150.02224 * 1 2 3 30 30 H 1.08005 * 120.72031 * 0.02562 * 3 2 1 31 31 H 1.08008 * 120.39605 * 179.97438 * 4 3 2 32 32 H 1.08995 * 110.67216 * 41.28614 * 8 7 6 33 33 H 1.09004 * 110.80922 * 278.21791 * 8 7 6 34 34 H 1.08999 * 110.72722 * 204.22642 * 9 8 7 35 35 H 1.08997 * 110.72276 * 80.93671 * 9 8 7 36 36 H 0.97000 * 120.00490 * 337.83354 * 12 10 9 37 37 H 1.09004 * 109.47195 * 300.00801 * 15 13 12 38 38 H 1.08999 * 109.46938 * 59.99837 * 15 13 12 39 39 H 0.96998 * 119.99776 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.91583 * 94.80689 * 25 7 6 41 41 H 1.09004 * 109.91554 * 333.51272 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2085 1.1955 0.0000 4 6 3.5936 1.1509 0.0005 5 7 4.2014 -0.0240 0.0065 6 6 3.5013 -1.1487 0.0010 7 7 4.1696 -2.3606 0.0016 8 6 3.8685 -3.1351 -1.2295 9 6 5.0451 -4.1398 -1.3131 10 6 6.2495 -3.3030 -0.8240 11 1 6.8018 -2.9021 -1.6739 12 7 7.1290 -4.1202 0.0155 13 6 8.4199 -3.7696 0.1804 14 8 8.8533 -2.7773 -0.3660 15 6 9.3248 -4.6105 1.0435 16 16 10.9827 -3.8844 1.0663 17 6 11.8063 -5.0353 2.1160 18 1 11.2659 -5.8764 2.5243 19 6 13.1494 -4.8601 2.4189 20 7 13.8080 -3.8346 1.9217 21 14 14.0225 -6.0798 3.5323 22 1 14.6058 -7.1706 2.7106 23 1 15.1056 -5.3856 4.2740 24 1 13.0502 -6.6530 4.4974 25 6 5.6347 -2.1579 0.0021 26 7 2.1762 -1.1408 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8902 -0.5135 30 1 1.6869 2.1413 0.0004 31 1 4.1699 2.0644 0.0001 32 1 3.8577 -2.4819 -2.1020 33 1 2.9191 -3.6619 -1.1331 34 1 5.1973 -4.4710 -2.3403 35 1 4.8734 -4.9905 -0.6538 36 1 6.7824 -4.9137 0.4527 37 1 8.9296 -4.6450 2.0588 38 1 9.3761 -5.6214 0.6392 39 1 14.7466 -3.7120 2.1338 40 1 6.0139 -2.1918 1.0234 41 1 5.8770 -1.1985 -0.4552 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096329313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:30 Heat of formation + Delta-G solvation = 8.890385 kcal Electronic energy + Delta-G solvation = -23682.256773 eV Core-core repulsion = 20109.053134 eV Total energy + Delta-G solvation = -3573.203639 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38912 -40.95002 -39.44067 -35.90336 -35.26686 -34.58146 -33.50444 -31.49353 -30.81546 -29.25162 -28.83910 -27.63543 -25.04377 -24.15054 -22.56666 -22.15075 -21.37191 -19.84987 -18.91196 -18.36595 -17.86803 -17.64710 -16.87755 -16.59899 -16.43268 -16.37576 -16.02063 -15.49126 -15.44297 -14.88157 -14.63337 -14.37974 -14.33904 -13.97105 -13.64636 -13.54914 -13.43961 -13.16293 -13.12626 -12.99521 -12.88910 -12.74807 -12.57950 -12.04216 -11.79106 -11.71940 -11.63878 -11.13994 -11.03689 -10.95360 -10.27248 -10.26053 -10.15678 -9.52791 -8.66136 -8.34382 -6.12258 -0.10042 0.10476 1.26752 1.42548 1.46730 1.57208 1.59274 2.08557 2.25616 2.29364 2.66587 2.99619 3.05968 3.31674 3.38696 3.54942 3.60118 3.71253 3.96852 4.04903 4.15873 4.17401 4.23227 4.29019 4.31955 4.51809 4.55960 4.65885 4.68824 4.73673 4.78471 4.82373 4.92732 4.97980 5.07738 5.33281 5.35679 5.42302 5.50262 5.70620 6.20231 6.20771 6.49440 7.06865 7.10073 7.23579 8.74811 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.028046 B = 0.002175 C = 0.002107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.110201 B =12870.787468 C =13284.522675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.181 3.819 3 C -0.247 4.247 4 C 0.157 3.843 5 N -0.585 5.585 6 C 0.468 3.532 7 N -0.453 5.453 8 C 0.060 3.940 9 C -0.114 4.114 10 C 0.138 3.862 11 H 0.085 0.915 12 N -0.702 5.702 13 C 0.535 3.465 14 O -0.562 6.562 15 C -0.129 4.129 16 S -0.151 6.151 17 C -0.546 4.546 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.911 5.911 21 Si 0.999 3.001 22 H -0.267 1.267 23 H -0.278 1.278 24 H -0.258 1.258 25 C 0.040 3.960 26 N -0.546 5.546 27 H 0.095 0.905 28 H 0.109 0.891 29 H 0.079 0.921 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.418 0.582 37 H 0.108 0.892 38 H 0.113 0.887 39 H 0.271 0.729 40 H 0.068 0.932 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.725 4.264 -6.072 31.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.033 3.967 3 C -0.269 4.269 4 C -0.008 4.008 5 N -0.306 5.306 6 C 0.111 3.889 7 N -0.173 5.173 8 C -0.065 4.065 9 C -0.152 4.152 10 C 0.032 3.968 11 H 0.103 0.897 12 N -0.357 5.357 13 C 0.321 3.679 14 O -0.440 6.440 15 C -0.280 4.280 16 S 0.076 5.924 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.192 1.192 23 H -0.204 1.204 24 H -0.182 1.182 25 C -0.089 4.089 26 N -0.265 5.265 27 H 0.114 0.886 28 H 0.127 0.873 29 H 0.098 0.902 30 H 0.202 0.798 31 H 0.210 0.790 32 H 0.070 0.930 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.256 0.744 37 H 0.126 0.874 38 H 0.131 0.869 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -29.543 4.799 -6.529 30.634 hybrid contribution 0.304 -0.473 1.055 1.196 sum -29.239 4.326 -5.474 30.060 Atomic orbital electron populations 1.20898 0.84930 1.05274 1.04690 1.22376 0.99202 0.87450 0.87653 1.23000 0.95759 1.01643 1.06520 1.23685 0.93532 0.95514 0.88060 1.68350 1.42482 0.99958 1.19810 1.21355 0.87207 0.89417 0.90902 1.61328 1.07060 1.11503 1.37441 1.23261 1.01102 0.94722 0.87457 1.22867 0.90087 0.97745 1.04476 1.21796 0.91295 0.91202 0.92546 0.89731 1.45800 1.08375 1.30259 1.51224 1.20105 0.82810 0.84575 0.80366 1.90700 1.75771 1.28282 1.49230 1.23371 0.98454 1.03200 1.03013 1.85579 1.02338 1.38916 1.65592 1.23207 0.98556 1.13212 1.34378 0.89889 1.26143 0.97268 0.98085 0.97784 1.70187 1.10397 1.30009 1.44181 0.84944 0.77679 0.77487 0.77806 1.19215 1.20351 1.18241 1.23213 0.84421 0.99758 1.01476 1.67904 1.07424 1.32197 1.18993 0.88622 0.87276 0.90180 0.79772 0.79025 0.93013 0.86907 0.87011 0.87524 0.74381 0.87420 0.86882 0.92016 0.91366 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.22 71.23 0.73 -0.03 16 2 C 0.18 2.90 6.82 42.58 0.29 3.19 16 3 C -0.25 -3.24 9.85 22.44 0.22 -3.02 16 4 C 0.16 2.84 11.30 84.71 0.96 3.79 16 5 N -0.59 -15.31 8.15 -197.99 -1.61 -16.93 16 6 C 0.47 12.17 6.98 261.49 1.83 14.00 16 7 N -0.45 -11.13 5.35 -696.25 -3.73 -14.86 16 8 C 0.06 1.06 6.31 86.65 0.55 1.61 16 9 C -0.11 -1.69 6.77 31.80 0.22 -1.47 16 10 C 0.14 3.29 3.29 45.87 0.15 3.44 16 11 H 0.08 2.34 7.65 -2.38 -0.02 2.32 16 12 N -0.70 -18.10 5.03 -438.38 -2.20 -20.31 16 13 C 0.54 19.98 7.84 87.66 0.69 20.67 16 14 O -0.56 -26.35 15.56 -3.04 -0.05 -26.40 16 15 C -0.13 -5.17 6.16 71.24 0.44 -4.73 16 16 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 17 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 18 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.68 5.49 84.86 0.47 1.15 16 20 N -0.91 -56.54 13.22 21.65 0.29 -56.25 16 21 Si 1.00 44.04 29.55 68.60 2.03 46.07 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 25 C 0.04 1.11 6.13 86.45 0.53 1.64 16 26 N -0.55 -12.49 10.15 -186.04 -1.89 -14.38 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.11 0.22 8.10 -2.38 -0.02 0.20 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 31 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.05 0.94 7.99 -2.39 -0.02 0.92 16 33 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 1.25 7.74 -2.39 -0.02 1.23 16 36 H 0.42 7.84 8.35 -92.71 -0.77 7.07 16 37 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 38 H 0.11 4.00 8.14 -2.40 -0.02 3.99 16 39 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 40 H 0.07 2.18 7.92 -2.39 -0.02 2.16 16 41 H 0.07 2.29 6.47 -2.38 -0.02 2.27 16 Total: -1.00 -84.30 360.85 -0.35 -84.64 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: 0.28 Total: 18.67 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 7.70 Total: 9.42 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -9.15 Total: -122.73 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.05 Total: -26.40 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -84.30 -0.35 -84.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096329313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.532 kcal (2) G-P(sol) polarization free energy of solvation -84.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds