Wall clock time and date at job start Tue Mar 31 2020 12:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48497 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99661 * 3 2 1 6 6 H 1.48505 * 109.47282 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99869 * 0.27508 * 7 2 1 10 10 H 1.08991 * 109.49745 * 59.72633 * 9 7 2 11 11 C 1.53048 * 109.49516 * 179.79298 * 9 7 2 12 12 C 1.53038 * 109.53630 * 181.31644 * 11 9 7 13 13 C 1.53193 * 109.31266 * 298.63405 * 12 11 9 14 14 N 1.46920 * 108.77744 * 54.63382 * 13 12 11 15 15 C 1.34777 * 120.62927 * 126.43282 * 14 13 12 16 16 S 1.71198 * 120.00370 * 354.78431 * 15 14 13 17 17 N 1.34779 * 119.99821 * 174.77915 * 15 14 13 18 18 C 1.46499 * 119.99818 * 184.98718 * 17 15 14 19 19 C 1.50704 * 109.47345 * 180.02562 * 18 17 15 20 20 C 1.38243 * 119.97478 * 269.73152 * 19 18 17 21 21 C 1.38202 * 120.02501 * 179.76509 * 20 19 18 22 22 C 1.38455 * 119.97198 * 0.50364 * 21 20 19 23 23 F 1.35098 * 120.02353 * 179.76734 * 22 21 20 24 24 C 1.38458 * 119.94982 * 359.74930 * 22 21 20 25 25 C 1.38193 * 119.97472 * 359.97438 * 24 22 21 26 26 C 1.46931 * 118.76917 * 306.41393 * 14 13 12 27 27 H 0.96997 * 120.00150 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45771 * 301.33519 * 11 9 7 29 29 H 1.08995 * 109.46050 * 61.30585 * 11 9 7 30 30 H 1.09007 * 109.49671 * 58.58122 * 12 11 9 31 31 H 1.08998 * 109.49539 * 178.64658 * 12 11 9 32 32 H 1.09006 * 109.58323 * 174.42617 * 13 12 11 33 33 H 1.09003 * 109.58448 * 294.84590 * 13 12 11 34 34 H 0.96998 * 119.99995 * 4.99707 * 17 15 14 35 35 H 1.09007 * 109.47730 * 300.00490 * 18 17 15 36 36 H 1.09002 * 109.47350 * 60.00346 * 18 17 15 37 37 H 1.08001 * 119.98730 * 0.02562 * 20 19 18 38 38 H 1.07998 * 120.01090 * 180.25159 * 21 20 19 39 39 H 1.07999 * 120.01357 * 179.97438 * 24 22 21 40 40 H 1.08005 * 119.98906 * 180.02562 * 25 24 22 41 41 H 1.09007 * 109.56004 * 293.78959 * 26 14 13 42 42 H 1.08998 * 109.61869 * 173.35583 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 -0.0051 10 1 0.6243 -2.5534 -0.8952 11 6 2.2451 -3.6628 -0.0085 12 6 1.4812 -4.9883 -0.0474 13 6 0.6046 -5.1048 1.2035 14 7 -0.2540 -3.9159 1.2918 15 6 -1.5905 -4.0415 1.4128 16 16 -2.3157 -5.5901 1.3310 17 7 -2.3560 -2.9478 1.5984 18 6 -3.7938 -3.0925 1.8391 19 6 -4.4138 -1.7298 2.0122 20 6 -4.4999 -1.1650 3.2710 21 6 -5.0639 0.0866 3.4302 22 6 -5.5522 0.7704 2.3298 23 9 -6.1080 1.9919 2.4849 24 6 -5.4702 0.2014 1.0702 25 6 -4.9007 -1.0478 0.9126 26 6 0.3713 -2.5870 1.2460 27 1 -0.4850 0.8400 0.0004 28 1 2.8882 -3.5884 -0.8854 29 1 2.8552 -3.6218 0.8938 30 1 0.8517 -5.0195 -0.9368 31 1 2.1899 -5.8160 -0.0740 32 1 -0.0151 -5.9988 1.1335 33 1 1.2376 -5.1649 2.0889 34 1 -1.9550 -2.0650 1.5725 35 1 -4.2556 -3.5962 0.9899 36 1 -3.9536 -3.6820 2.7419 37 1 -4.1225 -1.7002 4.1298 38 1 -5.1273 0.5294 4.4132 39 1 -5.8512 0.7336 0.2111 40 1 -4.8362 -1.4917 -0.0699 41 1 0.9849 -2.4416 2.1351 42 1 -0.4020 -1.8200 1.2036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196479336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:12 Heat of formation + Delta-G solvation = -13.842029 kcal Electronic energy + Delta-G solvation = -24866.485080 eV Core-core repulsion = 21272.375728 eV Total energy + Delta-G solvation = -3594.109352 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.01293 -39.72448 -39.01179 -36.46046 -33.90164 -32.64397 -31.28695 -30.86589 -30.08368 -26.48880 -25.68851 -24.67633 -23.20565 -22.18957 -21.60993 -21.48127 -19.26165 -17.93916 -17.62740 -16.92280 -16.54343 -16.44760 -15.69179 -15.47608 -14.87156 -14.65191 -14.45548 -14.10892 -13.93466 -13.86718 -13.72328 -13.59383 -13.08547 -12.85478 -12.73116 -12.37735 -12.07539 -11.72334 -11.34944 -11.25775 -11.16415 -11.02776 -10.74033 -10.70396 -10.48812 -10.39497 -10.07404 -9.46895 -9.26482 -9.24145 -8.82698 -8.74740 -8.28720 -7.27593 -6.98716 -6.37078 -4.41508 0.88935 1.10481 1.99850 2.48164 3.07368 3.10488 3.20502 3.23412 3.49910 3.92818 4.11690 4.18806 4.52698 4.57159 4.75666 4.98513 5.10394 5.12506 5.40190 5.46145 5.54755 5.60540 5.69606 5.78965 5.89860 5.94688 5.97023 6.06349 6.07144 6.11356 6.27842 6.37887 6.41842 6.45350 6.56229 6.69360 6.72475 6.76689 6.99655 7.14957 7.34473 7.50723 7.67124 7.81588 8.06983 8.63503 9.26031 10.70784 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.005149 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.860851 B = 5436.886135 C = 8199.227570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.513 4.513 8 H 0.063 0.937 9 C 0.041 3.959 10 H 0.033 0.967 11 C -0.114 4.114 12 C -0.132 4.132 13 C 0.102 3.898 14 N -0.553 5.553 15 C 0.577 3.423 16 S -0.710 6.710 17 N -0.685 5.685 18 C 0.172 3.828 19 C -0.119 4.119 20 C -0.069 4.069 21 C -0.158 4.158 22 C 0.105 3.895 23 F -0.141 7.141 24 C -0.154 4.154 25 C -0.061 4.061 26 C 0.093 3.907 27 H 0.264 0.736 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.135 0.865 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.061 0.939 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 -0.532 5.004 8.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.022 3.978 10 H 0.052 0.948 11 C -0.151 4.151 12 C -0.170 4.170 13 C -0.021 4.021 14 N -0.259 5.259 15 C 0.214 3.786 16 S -0.583 6.583 17 N -0.319 5.319 18 C 0.048 3.952 19 C -0.120 4.120 20 C -0.087 4.087 21 C -0.176 4.176 22 C 0.085 3.915 23 F -0.120 7.120 24 C -0.173 4.173 25 C -0.079 4.079 26 C -0.030 4.030 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.086 0.914 34 H 0.252 0.748 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.152 0.848 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.079 0.921 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.807 -1.302 4.984 9.354 hybrid contribution 0.933 2.629 0.000 2.789 sum -6.874 1.327 4.985 8.595 Atomic orbital electron populations 1.69759 1.06011 1.27081 1.50655 1.25004 0.94984 0.99502 0.94376 0.86445 0.80202 0.83123 0.77802 1.19600 1.20815 1.20886 1.21186 0.93332 0.89787 1.50804 0.91863 1.18970 0.92847 0.93036 0.92976 0.94838 1.21662 0.98482 0.93985 1.01014 1.21930 0.98506 0.98876 0.97676 1.22179 0.92865 0.88796 0.98310 1.47763 1.02689 1.10691 1.64776 1.21951 0.84299 0.91956 0.80416 1.93054 1.75598 1.10712 1.78929 1.45184 1.08693 1.07794 1.70230 1.20399 0.78118 0.92501 1.04163 1.19995 1.01441 0.96968 0.93612 1.20979 0.96447 0.94055 0.97248 1.21117 1.01959 0.96126 0.98426 1.17783 0.97678 0.81306 0.94715 1.91498 1.82957 1.41024 1.96491 1.21154 1.03013 0.96953 0.96130 1.21025 0.94632 0.93222 0.99065 1.22711 0.99098 0.80011 1.01171 0.92584 0.92548 0.92964 0.91784 0.91447 0.86352 0.91377 0.74845 0.88818 0.89216 0.84758 0.84652 0.84534 0.84525 0.92116 0.87388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.07 11.40 55.43 0.63 -21.44 16 2 C 0.06 1.54 5.31 -17.82 -0.09 1.44 16 3 Si 0.90 19.37 29.54 -169.99 -5.02 14.35 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.51 -12.36 8.56 -34.44 -0.29 -12.66 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.90 2.25 -91.65 -0.21 0.69 16 10 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 11 C -0.11 -2.08 5.11 -26.69 -0.14 -2.22 16 12 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 13 C 0.10 1.69 6.34 -3.71 -0.02 1.67 16 14 N -0.55 -10.16 2.97 -174.78 -0.52 -10.68 16 15 C 0.58 10.66 7.71 -86.92 -0.67 9.99 16 16 S -0.71 -14.42 27.01 -107.50 -2.90 -17.32 16 17 N -0.68 -11.09 5.46 -63.21 -0.34 -11.43 16 18 C 0.17 2.31 5.27 -5.19 -0.03 2.29 16 19 C -0.12 -1.44 5.25 -104.62 -0.55 -1.99 16 20 C -0.07 -0.76 9.70 -39.59 -0.38 -1.14 16 21 C -0.16 -1.74 10.03 -39.51 -0.40 -2.13 16 22 C 0.10 1.27 7.30 -39.42 -0.29 0.98 16 23 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 24 C -0.15 -1.79 10.03 -39.52 -0.40 -2.18 16 25 C -0.06 -0.72 9.70 -39.60 -0.38 -1.11 16 26 C 0.09 1.87 5.36 -3.70 -0.02 1.85 16 27 H 0.26 6.32 8.31 -40.82 -0.34 5.98 16 28 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.12 2.06 5.93 -49.62 -0.29 1.77 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.41 6.99 5.95 -40.82 -0.24 6.75 16 35 H 0.09 1.32 7.83 -51.92 -0.41 0.91 16 36 H 0.09 1.18 8.03 -51.93 -0.42 0.77 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 38 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 39 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 40 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.11 2.29 3.78 -51.93 -0.20 2.10 16 LS Contribution 355.74 15.07 5.36 5.36 Total: -1.00 -26.97 355.74 -12.54 -39.51 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -5.75 Total: 10.21 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -4.03 Total: -6.81 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: -0.23 Total: -43.55 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Atomic # 16 Polarization: -14.42 SS G_CDS: -2.90 Total: -17.32 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -26.97 -12.54 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196479336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.665 kcal (2) G-P(sol) polarization free energy of solvation -26.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds