Wall clock time and date at job start Tue Mar 31 2020 12:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99700 * 2 1 4 4 H 1.48497 * 109.46750 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47120 * 299.99661 * 3 2 1 6 6 H 1.48505 * 109.47282 * 60.00000 * 3 2 1 7 7 C 1.37874 * 120.00046 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99669 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99869 * 0.27508 * 7 2 1 10 10 H 1.08991 * 109.49745 * 59.72633 * 9 7 2 11 11 C 1.53048 * 109.49516 * 179.79298 * 9 7 2 12 12 C 1.53038 * 109.53630 * 181.31644 * 11 9 7 13 13 C 1.53193 * 109.31266 * 298.63405 * 12 11 9 14 14 N 1.46920 * 108.77744 * 54.63382 * 13 12 11 15 15 C 1.34777 * 120.62927 * 126.43282 * 14 13 12 16 16 S 1.71198 * 120.00370 * 354.78431 * 15 14 13 17 17 N 1.34779 * 119.99821 * 174.77915 * 15 14 13 18 18 C 1.46499 * 119.99818 * 184.98718 * 17 15 14 19 19 C 1.50704 * 109.47345 * 180.02562 * 18 17 15 20 20 C 1.38243 * 119.97478 * 269.73152 * 19 18 17 21 21 C 1.38202 * 120.02501 * 179.76509 * 20 19 18 22 22 C 1.38455 * 119.97198 * 0.50364 * 21 20 19 23 23 F 1.35098 * 120.02353 * 179.76734 * 22 21 20 24 24 C 1.38458 * 119.94982 * 359.74930 * 22 21 20 25 25 C 1.38193 * 119.97472 * 359.97438 * 24 22 21 26 26 C 1.46931 * 118.76917 * 306.41393 * 14 13 12 27 27 H 0.96997 * 120.00150 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.45771 * 301.33519 * 11 9 7 29 29 H 1.08995 * 109.46050 * 61.30585 * 11 9 7 30 30 H 1.09007 * 109.49671 * 58.58122 * 12 11 9 31 31 H 1.08998 * 109.49539 * 178.64658 * 12 11 9 32 32 H 1.09006 * 109.58323 * 174.42617 * 13 12 11 33 33 H 1.09003 * 109.58448 * 294.84590 * 13 12 11 34 34 H 0.96998 * 119.99995 * 4.99707 * 17 15 14 35 35 H 1.09007 * 109.47730 * 300.00490 * 18 17 15 36 36 H 1.09002 * 109.47350 * 60.00346 * 18 17 15 37 37 H 1.08001 * 119.98730 * 0.02562 * 20 19 18 38 38 H 1.07998 * 120.01090 * 180.25159 * 21 20 19 39 39 H 1.07999 * 120.01357 * 179.97438 * 24 22 21 40 40 H 1.08005 * 119.98906 * 180.02562 * 25 24 22 41 41 H 1.09007 * 109.56004 * 293.78959 * 26 14 13 42 42 H 1.08998 * 109.61869 * 173.35583 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2510 -2.4991 -0.0051 10 1 0.6243 -2.5534 -0.8952 11 6 2.2451 -3.6628 -0.0085 12 6 1.4812 -4.9883 -0.0474 13 6 0.6046 -5.1048 1.2035 14 7 -0.2540 -3.9159 1.2918 15 6 -1.5905 -4.0415 1.4128 16 16 -2.3157 -5.5901 1.3310 17 7 -2.3560 -2.9478 1.5984 18 6 -3.7938 -3.0925 1.8391 19 6 -4.4138 -1.7298 2.0122 20 6 -4.4999 -1.1650 3.2710 21 6 -5.0639 0.0866 3.4302 22 6 -5.5522 0.7704 2.3298 23 9 -6.1080 1.9919 2.4849 24 6 -5.4702 0.2014 1.0702 25 6 -4.9007 -1.0478 0.9126 26 6 0.3713 -2.5870 1.2460 27 1 -0.4850 0.8400 0.0004 28 1 2.8882 -3.5884 -0.8854 29 1 2.8552 -3.6218 0.8938 30 1 0.8517 -5.0195 -0.9368 31 1 2.1899 -5.8160 -0.0740 32 1 -0.0151 -5.9988 1.1335 33 1 1.2376 -5.1649 2.0889 34 1 -1.9550 -2.0650 1.5725 35 1 -4.2556 -3.5962 0.9899 36 1 -3.9536 -3.6820 2.7419 37 1 -4.1225 -1.7002 4.1298 38 1 -5.1273 0.5294 4.4132 39 1 -5.8512 0.7336 0.2111 40 1 -4.8362 -1.4917 -0.0699 41 1 0.9849 -2.4416 2.1351 42 1 -0.4020 -1.8200 1.2036 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196479336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:11 Heat of formation + Delta-G solvation = -24.388858 kcal Electronic energy + Delta-G solvation = -24866.942425 eV Core-core repulsion = 21272.375728 eV Total energy + Delta-G solvation = -3594.566697 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.121 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.97142 -41.00860 -40.15470 -37.80929 -35.52790 -34.09530 -32.17741 -32.11836 -31.59989 -27.81155 -27.32024 -26.03213 -24.10118 -23.66942 -23.05532 -22.56592 -20.77215 -19.24975 -18.69374 -18.49826 -18.04193 -17.50659 -16.72804 -16.65080 -16.40892 -16.03151 -15.67047 -15.54951 -15.34584 -14.96651 -14.88889 -14.56604 -14.51842 -14.43075 -13.98802 -13.62438 -13.26276 -12.96650 -12.87813 -12.73870 -12.54425 -12.36515 -12.34182 -12.10827 -12.01201 -11.88564 -11.58215 -11.10736 -10.96767 -10.58270 -10.13152 -9.78164 -9.69489 -8.85661 -8.58032 -8.21909 -6.31804 -0.06946 0.21588 0.51909 0.97222 1.38251 1.44658 1.52389 1.76803 2.29019 2.40398 2.70960 3.11608 3.20022 3.50660 3.68426 3.90780 4.01815 4.10500 4.14853 4.19285 4.24703 4.47715 4.54283 4.56642 4.59398 4.68944 4.84582 4.90863 4.92278 4.96102 5.03160 5.06776 5.07923 5.15434 5.21970 5.33585 5.44204 5.48451 5.58442 5.72960 5.81763 5.83484 5.96968 6.25467 6.38787 6.77109 7.37618 8.83957 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.008831 B = 0.005149 C = 0.003414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.860851 B = 5436.886135 C = 8199.227570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.040 3.960 10 H -0.005 1.005 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.101 3.899 14 N -0.555 5.555 15 C 0.578 3.422 16 S -0.743 6.743 17 N -0.675 5.675 18 C 0.176 3.824 19 C -0.125 4.125 20 C -0.067 4.067 21 C -0.156 4.156 22 C 0.091 3.909 23 F -0.146 7.146 24 C -0.159 4.159 25 C -0.070 4.070 26 C 0.108 3.892 27 H 0.264 0.736 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.046 0.954 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.096 0.904 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.149 0.851 40 H 0.140 0.860 41 H 0.063 0.937 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.655 -0.409 6.003 8.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.175 4.175 3 Si 0.775 3.225 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.206 1.206 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.013 0.987 11 C -0.146 4.146 12 C -0.160 4.160 13 C -0.022 4.022 14 N -0.260 5.260 15 C 0.213 3.787 16 S -0.617 6.617 17 N -0.307 5.307 18 C 0.054 3.946 19 C -0.126 4.126 20 C -0.086 4.086 21 C -0.175 4.175 22 C 0.072 3.928 23 F -0.125 7.125 24 C -0.177 4.177 25 C -0.088 4.088 26 C -0.016 4.016 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.120 0.880 32 H 0.131 0.869 33 H 0.107 0.893 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.114 0.886 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.081 0.919 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.271 -1.183 5.986 9.492 hybrid contribution 0.741 2.627 -0.335 2.750 sum -6.530 1.444 5.651 8.755 Atomic orbital electron populations 1.69849 1.06718 1.27465 1.50923 1.25589 0.95683 1.01865 0.94340 0.85641 0.79301 0.80141 0.77407 1.19325 1.21311 1.20639 1.21446 0.93375 0.91008 1.50863 0.92235 1.18891 0.93168 0.93787 0.92067 0.98663 1.21575 0.97845 0.93716 1.01437 1.21863 0.98565 0.98816 0.96715 1.22310 0.92766 0.87733 0.99381 1.47780 1.02813 1.10617 1.64837 1.21849 0.84383 0.91850 0.80588 1.93089 1.75992 1.12145 1.80444 1.45353 1.09622 1.07003 1.68762 1.20451 0.76537 0.93580 1.04068 1.19919 1.01936 0.96398 0.94328 1.21184 0.95946 0.94108 0.97354 1.21367 1.01069 0.95914 0.99123 1.18010 0.98142 0.81352 0.95323 1.91484 1.83110 1.41346 1.96534 1.21320 1.02859 0.96899 0.96661 1.21132 0.94871 0.93482 0.99325 1.22362 0.98452 0.80557 1.00250 0.92670 0.92689 0.91927 0.93478 0.88003 0.86927 0.89300 0.75137 0.89487 0.88577 0.82928 0.82571 0.83286 0.84201 0.91912 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.83 11.40 21.45 0.24 -44.58 16 2 C 0.03 1.22 5.31 84.65 0.45 1.67 16 3 Si 0.95 39.29 29.54 68.60 2.03 41.31 16 4 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.53 -25.35 8.56 25.60 0.22 -25.13 16 8 H 0.06 2.84 7.74 -2.91 -0.02 2.82 16 9 C 0.04 1.76 2.25 -11.46 -0.03 1.73 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.11 -3.82 5.11 30.62 0.16 -3.66 16 12 C -0.12 -3.70 6.08 30.67 0.19 -3.52 16 13 C 0.10 3.17 6.34 86.36 0.55 3.71 16 14 N -0.55 -19.91 2.97 -706.88 -2.10 -22.02 16 15 C 0.58 21.05 7.71 179.05 1.38 22.43 16 16 S -0.74 -29.80 27.01 -56.49 -1.53 -31.33 16 17 N -0.68 -21.57 5.46 -353.89 -1.93 -23.50 16 18 C 0.18 4.64 5.27 85.63 0.45 5.09 16 19 C -0.12 -2.90 5.25 -19.86 -0.10 -3.01 16 20 C -0.07 -1.38 9.70 22.26 0.22 -1.16 16 21 C -0.16 -3.17 10.03 22.31 0.22 -2.95 16 22 C 0.09 2.11 7.30 22.37 0.16 2.27 16 23 F -0.15 -3.56 17.27 44.97 0.78 -2.78 16 24 C -0.16 -3.58 10.03 22.31 0.22 -3.35 16 25 C -0.07 -1.62 9.70 22.26 0.22 -1.40 16 26 C 0.11 4.27 5.36 86.36 0.46 4.73 16 27 H 0.26 12.57 8.31 -92.71 -0.77 11.80 16 28 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 30 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.11 3.77 5.93 -3.85 -0.02 3.74 16 33 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.41 13.78 5.95 -92.71 -0.55 13.23 16 35 H 0.09 2.44 7.83 -2.38 -0.02 2.42 16 36 H 0.10 2.44 8.03 -2.39 -0.02 2.42 16 37 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 38 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 40 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 41 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 42 H 0.10 4.06 3.78 -2.39 -0.01 4.05 16 Total: -1.00 -56.58 355.74 2.73 -53.85 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.48 Total: 31.58 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.77 Total: -2.55 kcal Atomic # 7 Polarization: -86.31 SS G_CDS: -3.79 Total: -90.09 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.78 Total: -2.78 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 2.03 Total: 41.31 kcal Atomic # 16 Polarization: -29.80 SS G_CDS: -1.53 Total: -31.33 kcal Total: -56.58 2.73 -53.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196479336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.463 kcal (2) G-P(sol) polarization free energy of solvation -56.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds