Wall clock time and date at job start Tue Mar 31 2020 13:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48500 * 109.46931 * 269.99531 * 3 2 1 5 5 H 1.48502 * 109.47296 * 29.99787 * 3 2 1 6 6 H 1.48500 * 109.46989 * 150.00245 * 3 2 1 7 7 C 1.38623 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00632 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.35787 * 116.99988 * 174.93433 * 9 7 2 11 11 C 1.38904 * 119.99832 * 185.41071 * 10 9 7 12 12 C 1.38005 * 120.00104 * 179.72091 * 11 10 9 13 13 C 1.38907 * 119.99814 * 0.53176 * 12 11 10 14 14 N 1.40023 * 120.00263 * 179.76449 * 13 12 11 15 15 C 1.34775 * 120.00075 * 332.22401 * 14 13 12 16 16 O 1.21590 * 119.99946 * 354.80791 * 15 14 13 17 17 N 1.34781 * 120.00401 * 174.81176 * 15 14 13 18 18 C 1.47155 * 120.97940 * 5.76929 * 17 15 14 19 19 C 1.53286 * 108.38312 * 129.44445 * 18 17 15 20 20 O 1.42964 * 109.22313 * 52.30609 * 19 18 17 21 21 C 1.42962 * 114.16324 * 297.41648 * 20 19 18 22 22 C 1.47147 * 120.98499 * 185.49523 * 17 15 14 23 23 H 1.08998 * 109.68325 * 110.82893 * 22 17 15 24 24 C 1.52995 * 109.68046 * 350.27704 * 22 17 15 25 25 O 1.42903 * 109.47315 * 296.21558 * 24 22 17 26 26 C 1.38911 * 119.99928 * 359.74410 * 13 12 11 27 27 C 1.38015 * 119.99688 * 359.97438 * 26 13 12 28 28 H 0.96993 * 119.99746 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99799 * 359.97438 * 11 10 9 30 30 H 1.08001 * 120.00324 * 180.26767 * 12 11 10 31 31 H 0.97006 * 120.00124 * 152.22218 * 14 13 12 32 32 H 1.09001 * 109.68559 * 249.16910 * 18 17 15 33 33 H 1.09006 * 109.67846 * 9.68632 * 18 17 15 34 34 H 1.08999 * 109.51362 * 172.22811 * 19 18 17 35 35 H 1.09001 * 109.51772 * 292.37986 * 19 18 17 36 36 H 1.09004 * 109.50964 * 182.50713 * 21 20 19 37 37 H 1.08996 * 109.51664 * 302.60477 * 21 20 19 38 38 H 1.09004 * 109.47610 * 56.21523 * 24 22 17 39 39 H 1.09000 * 109.47094 * 176.21890 * 24 22 17 40 40 H 0.96700 * 114.00314 * 180.02562 * 25 24 22 41 41 H 1.08002 * 120.00371 * 179.97438 * 26 13 12 42 42 H 1.07997 * 119.99376 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6528 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0705 -3.5045 -0.1058 11 6 1.4355 -4.7341 -0.2253 12 6 2.1830 -5.8885 -0.3392 13 6 3.5704 -5.8220 -0.3230 14 7 4.3289 -6.9938 -0.4336 15 6 3.8221 -8.1674 -0.0064 16 8 2.7467 -8.1949 0.5603 17 7 4.5075 -9.3104 -0.2073 18 6 5.8645 -9.2900 -0.7761 19 6 6.7789 -10.1278 0.1249 20 8 6.1927 -11.4166 0.3223 21 6 4.9302 -11.3888 0.9925 22 6 3.9232 -10.6152 0.1412 23 1 3.7083 -11.1759 -0.7684 24 6 2.6324 -10.4061 0.9356 25 8 2.9344 -9.7596 2.1737 26 6 4.2054 -4.5929 -0.1977 27 6 3.4577 -3.4378 -0.0897 28 1 -0.4849 -0.8400 -0.0004 29 1 0.3567 -4.7862 -0.2334 30 1 1.6893 -6.8442 -0.4365 31 1 5.2191 -6.9610 -0.8176 32 1 5.8484 -9.7151 -1.7796 33 1 6.2296 -8.2638 -0.8179 34 1 7.7538 -10.2401 -0.3496 35 1 6.8969 -9.6302 1.0874 36 1 4.5750 -12.4084 1.1423 37 1 5.0415 -10.8966 1.9586 38 1 1.9474 -9.7846 0.3588 39 1 2.1674 -11.3718 1.1340 40 1 2.1611 -9.5952 2.7305 41 1 5.2841 -4.5412 -0.1847 42 1 3.9515 -2.4823 0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365002350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:00 Heat of formation + Delta-G solvation = -84.619262 kcal Electronic energy + Delta-G solvation = -27500.117096 eV Core-core repulsion = 23447.812952 eV Total energy + Delta-G solvation = -4052.304144 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.09501 -39.35290 -38.50063 -37.07944 -36.21212 -34.93528 -33.93710 -32.23568 -31.89569 -30.25083 -28.88371 -27.33733 -26.17120 -24.92579 -23.23571 -22.77830 -22.18020 -21.06232 -19.78171 -18.44237 -18.15569 -17.56076 -17.31053 -16.78267 -16.23958 -15.83918 -15.60316 -15.39161 -14.96005 -14.89529 -14.68053 -14.11679 -13.82277 -13.71357 -13.64050 -13.41519 -13.39007 -13.05355 -12.50535 -12.35850 -11.95946 -11.75462 -11.73289 -11.43131 -11.16357 -11.02174 -10.86858 -10.49212 -10.32930 -10.29979 -10.19454 -9.59683 -9.34425 -9.10850 -8.66189 -8.60028 -8.23541 -6.91399 -6.73975 -4.02457 2.11193 2.19146 2.40660 3.24332 3.25761 3.33895 3.42056 3.44256 3.72836 4.13646 4.25333 4.34874 4.54778 4.58685 4.69401 4.71405 4.86909 5.01755 5.13103 5.18765 5.23685 5.26147 5.35671 5.38780 5.49820 5.72228 5.72720 5.77092 6.01398 6.13902 6.23279 6.31114 6.61337 6.70996 6.80029 6.84974 7.11185 7.17069 7.25630 7.57264 7.73032 7.76085 7.94494 8.43033 8.65210 8.95353 9.65123 10.70140 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.002605 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.387960 B =10747.843724 C =11375.335063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.009 3.991 3 Si 1.099 2.901 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.283 1.283 7 C -0.471 4.471 8 H 0.083 0.917 9 O -0.204 6.204 10 C 0.145 3.855 11 C -0.178 4.178 12 C -0.074 4.074 13 C 0.064 3.936 14 N -0.676 5.676 15 C 0.709 3.291 16 O -0.550 6.550 17 N -0.629 5.629 18 C 0.076 3.924 19 C 0.048 3.952 20 O -0.382 6.382 21 C 0.052 3.948 22 C 0.134 3.866 23 H 0.088 0.912 24 C 0.081 3.919 25 O -0.556 6.556 26 C -0.098 4.098 27 C -0.212 4.212 28 H 0.282 0.718 29 H 0.118 0.882 30 H 0.133 0.867 31 H 0.394 0.606 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.033 0.967 40 H 0.376 0.624 41 H 0.109 0.891 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.266 -21.494 -1.198 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.196 4.196 3 Si 0.923 3.077 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.209 1.209 7 C -0.547 4.547 8 H 0.101 0.899 9 O -0.108 6.108 10 C 0.092 3.908 11 C -0.198 4.198 12 C -0.094 4.094 13 C -0.029 4.029 14 N -0.325 5.325 15 C 0.412 3.588 16 O -0.426 6.426 17 N -0.369 5.369 18 C -0.048 4.048 19 C -0.029 4.029 20 O -0.300 6.300 21 C -0.026 4.026 22 C 0.030 3.970 23 H 0.105 0.895 24 C 0.003 3.997 25 O -0.361 6.361 26 C -0.119 4.119 27 C -0.232 4.232 28 H 0.092 0.908 29 H 0.136 0.864 30 H 0.151 0.849 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.051 0.949 40 H 0.223 0.777 41 H 0.127 0.873 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 11.692 -20.008 -1.064 23.198 hybrid contribution 0.322 -1.434 0.033 1.470 sum 12.014 -21.442 -1.031 24.600 Atomic orbital electron populations 1.70544 1.06557 1.31673 1.42806 1.26511 0.96866 1.01105 0.95158 0.83053 0.74159 0.73153 0.77326 1.20762 1.20088 1.20862 1.22207 0.93032 0.82285 1.57190 0.89935 1.83678 1.35374 1.12135 1.79661 1.19247 0.90222 0.87502 0.93806 1.20128 0.99525 0.89881 1.10228 1.20754 0.91731 0.97985 0.98927 1.17078 0.90612 0.83963 1.11237 1.42602 1.19392 1.05590 1.64867 1.15718 0.84124 0.79866 0.79107 1.90818 1.21841 1.84033 1.45939 1.47195 1.16480 1.05097 1.68096 1.22332 0.82876 1.01505 0.98044 1.22954 0.96233 0.84494 0.99261 1.87942 1.35031 1.27876 1.79132 1.22962 0.83058 1.01035 0.95528 1.21795 0.94061 0.83166 0.97991 0.89463 1.22306 0.95218 0.94806 0.87396 1.86401 1.37050 1.82062 1.30606 1.20402 0.98391 0.91047 1.02067 1.20953 0.93610 0.98404 1.10190 0.90759 0.86408 0.84948 0.76965 0.90387 0.89531 0.87624 0.92409 0.87949 0.91212 0.89541 0.94918 0.77677 0.87254 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.70 55.48 0.76 -25.87 16 2 C 0.01 0.24 5.49 -17.52 -0.10 0.15 16 3 Si 1.10 23.83 29.92 -169.99 -5.09 18.74 16 4 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.47 -13.33 9.48 30.87 0.29 -13.04 16 8 H 0.08 2.18 5.20 -52.49 -0.27 1.91 16 9 O -0.20 -5.81 9.16 -0.03 0.00 -5.81 16 10 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 11 C -0.18 -3.90 9.98 -39.42 -0.39 -4.30 16 12 C -0.07 -1.45 8.68 -39.42 -0.34 -1.79 16 13 C 0.06 1.15 6.39 -83.62 -0.53 0.62 16 14 N -0.68 -9.60 5.27 -14.18 -0.07 -9.67 16 15 C 0.71 10.33 7.80 -86.92 -0.68 9.65 16 16 O -0.55 -9.33 8.23 -19.12 -0.16 -9.49 16 17 N -0.63 -7.03 3.02 -170.68 -0.52 -7.54 16 18 C 0.08 0.60 6.57 -3.54 -0.02 0.58 16 19 C 0.05 0.37 6.98 37.31 0.26 0.63 16 20 O -0.38 -3.66 10.74 -35.23 -0.38 -4.04 16 21 C 0.05 0.47 6.19 37.10 0.23 0.70 16 22 C 0.13 1.34 3.46 -67.64 -0.23 1.11 16 23 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 24 C 0.08 0.87 5.80 37.15 0.22 1.08 16 25 O -0.56 -7.01 10.46 -59.64 -0.62 -7.63 16 26 C -0.10 -1.80 9.94 -39.41 -0.39 -2.19 16 27 C -0.21 -4.63 9.16 -39.42 -0.36 -5.00 16 28 H 0.28 8.71 7.97 -40.82 -0.33 8.39 16 29 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 30 H 0.13 2.52 5.99 -52.49 -0.31 2.21 16 31 H 0.39 4.29 6.36 -40.82 -0.26 4.03 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.56 5.79 -51.93 -0.30 0.26 16 34 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.76 7.32 -51.93 -0.38 0.38 16 38 H 0.09 1.13 5.96 -52.02 -0.31 0.82 16 39 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.38 3.81 9.12 45.56 0.42 4.23 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 42 H 0.13 2.88 5.63 -52.49 -0.30 2.59 16 LS Contribution 338.69 15.07 5.10 5.10 Total: -1.00 -34.58 338.69 -7.51 -42.09 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -4.22 Total: 12.62 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -2.32 Total: -8.49 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 0.17 Total: -43.09 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -1.16 Total: -26.98 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.09 Total: 18.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.58 -7.51 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365002350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.533 kcal (2) G-P(sol) polarization free energy of solvation -34.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds