Wall clock time and date at job start Tue Mar 31 2020 13:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31578 * 1 3 3 Si 1.86805 * 119.99721 * 2 1 4 4 H 1.48500 * 109.46931 * 269.99531 * 3 2 1 5 5 H 1.48502 * 109.47296 * 29.99787 * 3 2 1 6 6 H 1.48500 * 109.46989 * 150.00245 * 3 2 1 7 7 C 1.38623 * 120.00356 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00632 * 179.97438 * 7 2 1 9 9 O 1.34815 * 119.99837 * 0.02562 * 7 2 1 10 10 C 1.35787 * 116.99988 * 174.93433 * 9 7 2 11 11 C 1.38904 * 119.99832 * 185.41071 * 10 9 7 12 12 C 1.38005 * 120.00104 * 179.72091 * 11 10 9 13 13 C 1.38907 * 119.99814 * 0.53176 * 12 11 10 14 14 N 1.40023 * 120.00263 * 179.76449 * 13 12 11 15 15 C 1.34775 * 120.00075 * 332.22401 * 14 13 12 16 16 O 1.21590 * 119.99946 * 354.80791 * 15 14 13 17 17 N 1.34781 * 120.00401 * 174.81176 * 15 14 13 18 18 C 1.47155 * 120.97940 * 5.76929 * 17 15 14 19 19 C 1.53286 * 108.38312 * 129.44445 * 18 17 15 20 20 O 1.42964 * 109.22313 * 52.30609 * 19 18 17 21 21 C 1.42962 * 114.16324 * 297.41648 * 20 19 18 22 22 C 1.47147 * 120.98499 * 185.49523 * 17 15 14 23 23 H 1.08998 * 109.68325 * 110.82893 * 22 17 15 24 24 C 1.52995 * 109.68046 * 350.27704 * 22 17 15 25 25 O 1.42903 * 109.47315 * 296.21558 * 24 22 17 26 26 C 1.38911 * 119.99928 * 359.74410 * 13 12 11 27 27 C 1.38015 * 119.99688 * 359.97438 * 26 13 12 28 28 H 0.96993 * 119.99746 * 179.97438 * 1 2 3 29 29 H 1.08003 * 119.99799 * 359.97438 * 11 10 9 30 30 H 1.08001 * 120.00324 * 180.26767 * 12 11 10 31 31 H 0.97006 * 120.00124 * 152.22218 * 14 13 12 32 32 H 1.09001 * 109.68559 * 249.16910 * 18 17 15 33 33 H 1.09006 * 109.67846 * 9.68632 * 18 17 15 34 34 H 1.08999 * 109.51362 * 172.22811 * 19 18 17 35 35 H 1.09001 * 109.51772 * 292.37986 * 19 18 17 36 36 H 1.09004 * 109.50964 * 182.50713 * 21 20 19 37 37 H 1.08996 * 109.51664 * 302.60477 * 21 20 19 38 38 H 1.09004 * 109.47610 * 56.21523 * 24 22 17 39 39 H 1.09000 * 109.47094 * 176.21890 * 24 22 17 40 40 H 0.96700 * 114.00314 * 180.02562 * 25 24 22 41 41 H 1.08002 * 120.00371 * 179.97438 * 26 13 12 42 42 H 1.07997 * 119.99376 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6178 0.0000 4 1 2.4973 2.0464 -1.4001 5 1 1.4471 2.6528 0.7000 6 1 3.5473 1.4403 0.7000 7 6 2.0090 -1.2005 0.0005 8 1 3.0890 -1.2005 0.0001 9 8 1.3349 -2.3680 0.0005 10 6 2.0705 -3.5045 -0.1058 11 6 1.4355 -4.7341 -0.2253 12 6 2.1830 -5.8885 -0.3392 13 6 3.5704 -5.8220 -0.3230 14 7 4.3289 -6.9938 -0.4336 15 6 3.8221 -8.1674 -0.0064 16 8 2.7467 -8.1949 0.5603 17 7 4.5075 -9.3104 -0.2073 18 6 5.8645 -9.2900 -0.7761 19 6 6.7789 -10.1278 0.1249 20 8 6.1927 -11.4166 0.3223 21 6 4.9302 -11.3888 0.9925 22 6 3.9232 -10.6152 0.1412 23 1 3.7083 -11.1759 -0.7684 24 6 2.6324 -10.4061 0.9356 25 8 2.9344 -9.7596 2.1737 26 6 4.2054 -4.5929 -0.1977 27 6 3.4577 -3.4378 -0.0897 28 1 -0.4849 -0.8400 -0.0004 29 1 0.3567 -4.7862 -0.2334 30 1 1.6893 -6.8442 -0.4365 31 1 5.2191 -6.9610 -0.8176 32 1 5.8484 -9.7151 -1.7796 33 1 6.2296 -8.2638 -0.8179 34 1 7.7538 -10.2401 -0.3496 35 1 6.8969 -9.6302 1.0874 36 1 4.5750 -12.4084 1.1423 37 1 5.0415 -10.8966 1.9586 38 1 1.9474 -9.7846 0.3588 39 1 2.1674 -11.3718 1.1340 40 1 2.1611 -9.5952 2.7305 41 1 5.2841 -4.5412 -0.1847 42 1 3.9515 -2.4823 0.0074 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365002350.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:59 Heat of formation + Delta-G solvation = -110.821817 kcal Electronic energy + Delta-G solvation = -27501.253324 eV Core-core repulsion = 23447.812952 eV Total energy + Delta-G solvation = -4053.440372 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.14131 -40.85649 -39.73440 -38.39005 -37.40506 -35.91183 -35.26306 -34.11159 -32.79803 -31.91719 -30.00464 -28.64230 -26.94474 -26.91594 -24.10295 -24.01275 -23.65178 -22.45502 -21.00914 -20.15067 -19.25070 -18.82757 -18.46024 -18.07786 -17.28565 -17.02967 -16.52710 -16.49171 -16.10912 -15.88906 -15.79807 -15.66541 -15.59002 -15.32730 -14.93418 -14.70589 -14.36120 -14.23513 -13.97692 -13.45279 -13.34208 -13.04081 -12.95355 -12.56426 -12.47370 -12.23275 -12.15764 -11.90491 -11.84569 -11.40749 -11.31629 -11.21862 -10.88317 -10.52979 -10.20375 -9.86959 -9.50389 -8.91772 -8.57411 -6.20260 0.46377 0.54764 1.39662 1.50683 1.63734 1.79398 2.09719 2.38325 2.72682 2.80172 2.85965 3.14129 3.36717 3.44537 3.67784 3.86631 3.94989 4.02601 4.08744 4.10108 4.18438 4.33862 4.44058 4.47891 4.53468 4.57324 4.69793 4.77041 4.79646 4.93107 4.99190 5.04409 5.14260 5.30309 5.35227 5.48824 5.53434 5.70665 5.84914 6.05744 6.06739 6.29559 6.84521 6.89771 6.94218 7.51908 7.66669 8.53743 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.029736 B = 0.002605 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.387960 B =10747.843724 C =11375.335063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.047 4.047 3 Si 1.148 2.852 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.257 1.257 7 C -0.485 4.485 8 H 0.095 0.905 9 O -0.254 6.254 10 C 0.104 3.896 11 C -0.184 4.184 12 C -0.077 4.077 13 C 0.095 3.905 14 N -0.667 5.667 15 C 0.701 3.299 16 O -0.578 6.578 17 N -0.624 5.624 18 C 0.070 3.930 19 C 0.047 3.953 20 O -0.391 6.391 21 C 0.059 3.941 22 C 0.128 3.872 23 H 0.106 0.894 24 C 0.081 3.919 25 O -0.575 6.575 26 C -0.090 4.090 27 C -0.214 4.214 28 H 0.259 0.741 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.414 0.586 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.047 0.953 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.383 0.617 41 H 0.156 0.844 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.963 -23.595 -1.914 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.243 4.243 3 Si 0.964 3.036 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.181 1.181 7 C -0.561 4.561 8 H 0.112 0.888 9 O -0.162 6.162 10 C 0.054 3.946 11 C -0.204 4.204 12 C -0.098 4.098 13 C 0.000 4.000 14 N -0.318 5.318 15 C 0.404 3.596 16 O -0.456 6.456 17 N -0.363 5.363 18 C -0.052 4.052 19 C -0.031 4.031 20 O -0.310 6.310 21 C -0.018 4.018 22 C 0.025 3.975 23 H 0.124 0.876 24 C 0.003 3.997 25 O -0.381 6.381 26 C -0.110 4.110 27 C -0.233 4.233 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.157 0.843 31 H 0.254 0.746 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.153 0.847 35 H 0.066 0.934 36 H 0.141 0.859 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.231 0.769 41 H 0.174 0.826 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.471 -22.221 -1.800 27.136 hybrid contribution -0.672 -1.248 0.241 1.437 sum 14.800 -23.469 -1.559 27.789 Atomic orbital electron populations 1.70687 1.07859 1.30034 1.47068 1.28406 0.96899 1.04997 0.93989 0.82537 0.73876 0.68661 0.78522 1.18903 1.20098 1.18053 1.22635 0.93786 0.82853 1.56806 0.88753 1.83659 1.36772 1.13098 1.82665 1.19729 0.91690 0.87159 0.96036 1.20275 0.99782 0.90095 1.10267 1.20877 0.92794 0.97228 0.98875 1.17172 0.90261 0.85441 1.07081 1.42459 1.19954 1.04390 1.65014 1.15948 0.84061 0.80583 0.79024 1.90833 1.23197 1.84598 1.46994 1.47275 1.17502 1.04345 1.67184 1.22633 0.80965 1.02854 0.98758 1.23123 0.97307 0.83624 0.99015 1.87940 1.35009 1.29010 1.79003 1.22907 0.82910 1.01792 0.94220 1.22023 0.93920 0.82785 0.98821 0.87589 1.22312 0.95416 0.95385 0.86543 1.86363 1.37925 1.82508 1.31339 1.20735 1.00474 0.89557 1.00267 1.21091 0.92649 0.99792 1.09798 0.93232 0.86924 0.84252 0.74580 0.88557 0.87915 0.84713 0.93413 0.85895 0.93246 0.92077 0.92209 0.76934 0.82623 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.52 13.70 21.61 0.30 -58.22 16 2 C -0.05 -2.74 5.49 84.82 0.47 -2.28 16 3 Si 1.15 48.22 29.92 68.60 2.05 50.27 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 5 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 7 C -0.48 -28.47 9.48 67.91 0.64 -27.82 16 8 H 0.10 5.08 5.20 -2.91 -0.02 5.06 16 9 O -0.25 -15.34 9.16 -23.01 -0.21 -15.55 16 10 C 0.10 5.26 6.65 22.59 0.15 5.41 16 11 C -0.18 -8.35 9.98 22.37 0.22 -8.13 16 12 C -0.08 -2.99 8.68 22.37 0.19 -2.80 16 13 C 0.10 3.17 6.39 38.15 0.24 3.42 16 14 N -0.67 -16.60 5.27 -317.05 -1.67 -18.27 16 15 C 0.70 18.64 7.80 179.05 1.40 20.04 16 16 O -0.58 -18.88 8.23 19.33 0.16 -18.72 16 17 N -0.62 -12.03 3.02 -812.17 -2.45 -14.48 16 18 C 0.07 0.82 6.57 86.35 0.57 1.38 16 19 C 0.05 0.53 6.98 72.08 0.50 1.04 16 20 O -0.39 -6.20 10.74 -148.98 -1.60 -7.80 16 21 C 0.06 0.93 6.19 71.94 0.45 1.37 16 22 C 0.13 2.21 3.46 44.83 0.16 2.37 16 23 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 24 C 0.08 1.62 5.80 71.98 0.42 2.04 16 25 O -0.57 -13.95 10.46 -125.65 -1.31 -15.27 16 26 C -0.09 -3.01 9.94 22.38 0.22 -2.79 16 27 C -0.21 -9.22 9.16 22.37 0.20 -9.02 16 28 H 0.26 17.23 7.97 -92.71 -0.74 16.49 16 29 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 30 H 0.14 5.24 5.99 -2.91 -0.02 5.22 16 31 H 0.41 7.03 6.36 -92.70 -0.59 6.44 16 32 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 0.83 5.79 -2.38 -0.01 0.82 16 34 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.12 1.38 8.14 -2.38 -0.02 1.36 16 37 H 0.05 0.99 7.32 -2.39 -0.02 0.97 16 38 H 0.06 1.55 5.96 -3.93 -0.02 1.52 16 39 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.38 7.67 9.12 -74.06 -0.68 6.99 16 41 H 0.16 3.81 8.06 -2.91 -0.02 3.78 16 42 H 0.13 5.58 5.63 -2.91 -0.02 5.56 16 Total: -1.00 -80.11 338.69 0.94 -79.16 By element: Atomic # 1 Polarization: 34.81 SS G_CDS: -0.15 Total: 34.66 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 5.83 Total: -15.78 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -3.83 Total: -90.97 kcal Atomic # 8 Polarization: -54.38 SS G_CDS: -2.97 Total: -57.35 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.05 Total: 50.27 kcal Total: -80.11 0.94 -79.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365002350.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.660 kcal (2) G-P(sol) polarization free energy of solvation -80.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds