Wall clock time and date at job start Tue Mar 31 2020 12:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42899 * 114.00253 * 2 1 4 4 H 1.08995 * 109.47077 * 330.00801 * 3 2 1 5 5 C 1.53002 * 109.46638 * 90.00306 * 3 2 1 6 6 C 1.50702 * 109.47496 * 209.99851 * 3 2 1 7 7 N 1.28859 * 124.76769 * 135.28097 * 6 3 2 8 8 C 1.32464 * 117.10792 * 180.22964 * 7 6 3 9 9 C 1.48517 * 122.93947 * 179.74913 * 8 7 6 10 10 C 1.36442 * 126.89568 * 334.71748 * 9 8 7 11 11 N 1.35349 * 106.03054 * 180.02562 * 10 9 8 12 12 C 1.46493 * 125.77372 * 179.97438 * 11 10 9 13 13 C 1.52993 * 109.47756 * 124.99292 * 12 11 10 14 14 C 1.50699 * 109.47423 * 180.02562 * 13 12 11 15 15 H 1.07998 * 119.99887 * 0.02562 * 14 13 12 16 16 C 1.37880 * 120.00109 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99702 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00157 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47101 * 89.99970 * 18 16 14 20 20 H 1.48494 * 109.46988 * 210.00382 * 18 16 14 21 21 H 1.48504 * 109.46663 * 330.00116 * 18 16 14 22 22 N 1.28658 * 108.46074 * 359.97438 * 11 10 9 23 23 N 1.28614 * 110.48287 * 0.02562 * 22 11 10 24 24 C 1.34723 * 114.11662 * 359.49024 * 8 7 6 25 25 C 1.50697 * 126.05519 * 180.30551 * 24 8 7 26 26 S 1.70920 * 124.77204 * 314.97862 * 6 3 2 27 27 H 1.09001 * 109.47491 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46921 * 299.99521 * 1 2 3 29 29 H 1.09006 * 109.46963 * 59.99713 * 1 2 3 30 30 H 1.09001 * 109.47619 * 60.00196 * 5 3 2 31 31 H 1.09002 * 109.47172 * 180.02562 * 5 3 2 32 32 H 1.09002 * 109.47180 * 299.99656 * 5 3 2 33 33 H 1.07998 * 126.98626 * 0.03038 * 10 9 8 34 34 H 1.09003 * 109.46877 * 245.00025 * 12 11 10 35 35 H 1.09005 * 109.46935 * 4.99179 * 12 11 10 36 36 H 1.08995 * 109.47253 * 300.00357 * 13 12 11 37 37 H 1.09005 * 109.46991 * 59.99921 * 13 12 11 38 38 H 0.96998 * 119.99380 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47528 * 89.99473 * 25 24 8 40 40 H 1.09000 * 109.46965 * 209.99802 * 25 24 8 41 41 H 1.09003 * 109.47268 * 329.98813 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 -0.5137 5 6 2.2177 1.7712 1.4426 6 6 3.3387 1.2639 -0.7104 7 7 3.7363 2.1313 -1.5764 8 6 4.9333 1.9445 -2.1120 9 6 5.5163 2.8601 -3.1256 10 6 4.8346 3.6707 -3.9857 11 7 5.7743 4.3150 -4.7163 12 6 5.5139 5.2944 -5.7741 13 6 6.2619 6.5923 -5.4631 14 6 5.9934 7.6000 -6.5510 15 1 5.3529 7.3408 -7.3810 16 6 6.5655 8.8528 -6.4867 17 7 7.3459 9.1682 -5.4761 18 14 6.2322 10.1022 -7.8348 19 1 5.0332 10.9039 -7.4813 20 1 7.4050 11.0018 -7.9770 21 1 5.9933 9.3938 -9.1180 22 7 6.9351 3.9219 -4.3247 23 7 6.8221 3.0565 -3.3800 24 6 5.5778 0.8542 -1.6527 25 6 6.9501 0.3931 -2.0713 26 16 4.5327 0.0638 -0.4752 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 2.8830 1.0773 1.9564 31 1 2.6607 2.7671 1.4427 32 1 1.2569 1.8013 1.9564 33 1 3.7629 3.7768 -4.0670 34 1 5.8569 4.8972 -6.7294 35 1 4.4439 5.4957 -5.8275 36 1 5.9189 6.9894 -4.5078 37 1 7.3319 6.3911 -5.4097 38 1 7.7487 10.0495 -5.4311 39 1 7.6993 0.8455 -1.4216 40 1 7.0085 -0.6925 -1.9922 41 1 7.1352 0.6926 -3.1029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887491649.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:24 Heat of formation + Delta-G solvation = 64.233754 kcal Electronic energy + Delta-G solvation = -23714.866021 eV Core-core repulsion = 20144.062251 eV Total energy + Delta-G solvation = -3570.803770 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.120 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.23804 -40.96366 -39.15379 -36.79241 -34.98189 -34.28488 -32.31655 -32.13668 -31.64217 -28.18336 -27.57792 -27.38190 -25.37067 -24.57285 -24.09826 -22.80616 -21.84006 -20.24657 -19.19665 -18.88013 -17.65709 -17.50309 -17.20461 -16.85712 -16.49826 -16.41115 -16.11054 -15.61880 -15.40416 -15.07722 -14.52124 -14.34529 -14.00227 -13.92630 -13.69644 -13.59105 -13.55232 -13.19015 -13.01439 -12.87634 -12.67877 -12.59093 -12.47999 -12.23884 -12.04291 -11.96821 -11.76068 -11.46938 -11.08995 -10.85793 -10.78526 -10.65738 -10.63330 -10.20043 -9.37840 -8.27048 -6.41425 -0.47430 0.23349 0.57038 0.65517 1.02104 1.39894 1.43483 1.48379 1.55239 2.05510 2.29449 2.38999 3.06455 3.08446 3.49211 3.70509 3.83139 3.93688 3.97491 4.06292 4.13312 4.23393 4.31208 4.51994 4.52894 4.58642 4.60785 4.67599 4.71172 4.75095 4.83065 4.89878 4.91802 5.00947 5.18942 5.22548 5.27573 5.43146 5.52204 5.74180 6.03119 6.06527 6.58061 6.74866 7.29787 7.44432 8.85634 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.018948 B = 0.002470 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.402052 B =11332.348511 C =12248.798363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.165 3.835 4 H 0.097 0.903 5 C -0.166 4.166 6 C 0.028 3.972 7 N -0.472 5.472 8 C 0.118 3.882 9 C 0.022 3.978 10 C -0.011 4.011 11 N -0.275 5.275 12 C 0.124 3.876 13 C 0.023 3.977 14 C -0.542 4.542 15 H 0.082 0.918 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.975 3.025 19 H -0.271 1.271 20 H -0.288 1.288 21 H -0.256 1.256 22 N -0.111 5.111 23 N -0.276 5.276 24 C -0.205 4.205 25 C -0.070 4.070 26 S 0.218 5.782 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.220 0.780 34 H 0.107 0.893 35 H 0.130 0.870 36 H -0.009 1.009 37 H 0.000 1.000 38 H 0.265 0.735 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.681 -21.162 11.972 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.104 3.896 4 H 0.114 0.886 5 C -0.224 4.224 6 C -0.251 4.251 7 N -0.188 5.188 8 C -0.014 4.014 9 C -0.119 4.119 10 C -0.165 4.165 11 N -0.067 5.067 12 C 0.005 3.995 13 C -0.015 4.015 14 C -0.580 4.580 15 H 0.100 0.900 16 C -0.199 4.199 17 N -0.573 5.573 18 Si 0.798 3.202 19 H -0.196 1.196 20 H -0.214 1.214 21 H -0.179 1.179 22 N -0.091 5.091 23 N -0.143 5.143 24 C -0.328 4.328 25 C -0.129 4.129 26 S 0.474 5.526 27 H 0.122 0.878 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.237 0.763 34 H 0.125 0.875 35 H 0.148 0.852 36 H 0.009 0.991 37 H 0.018 0.982 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.240 -21.484 12.306 28.077 hybrid contribution -0.653 1.971 -1.086 2.343 sum -13.892 -19.514 11.220 26.451 Atomic orbital electron populations 1.23065 0.78249 1.04421 1.01343 1.87872 1.22328 1.26169 1.95244 1.20372 0.87324 0.86362 0.95578 0.88552 1.22281 1.04437 1.02024 0.93657 1.26889 1.02490 0.95972 0.99716 1.65882 1.14363 1.28651 1.09926 1.17074 0.90714 0.94542 0.99110 1.19512 0.89936 1.02225 1.00228 1.24061 0.98905 0.97597 0.95888 1.47836 1.04297 1.28367 1.26204 1.22601 1.03971 0.86162 0.86746 1.19155 0.95054 0.90834 0.96443 1.21444 1.30470 0.97893 1.08231 0.90012 1.26060 0.94410 1.00980 0.98419 1.70144 1.32550 1.21993 1.32621 0.85301 0.77640 0.78115 0.79110 1.19601 1.21351 1.17930 1.78256 1.07898 1.11436 1.11470 1.75179 1.17321 1.11681 1.10096 1.26385 1.03818 0.99337 1.03239 1.20299 0.88389 1.01943 1.02303 1.83599 1.06049 1.26563 1.36344 0.87830 0.92004 0.93348 0.91254 0.91337 0.88904 0.76301 0.87509 0.85248 0.99109 0.98204 0.92643 0.89816 0.88785 0.91201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 10.82 113.37 1.23 1.46 16 2 O -0.40 -6.43 10.17 -148.98 -1.52 -7.94 16 3 C 0.16 2.84 3.23 29.85 0.10 2.93 16 4 H 0.10 1.56 7.79 -2.39 -0.02 1.54 16 5 C -0.17 -2.22 9.51 71.98 0.68 -1.54 16 6 C 0.03 0.65 6.32 88.55 0.56 1.21 16 7 N -0.47 -13.73 10.51 -180.48 -1.90 -15.63 16 8 C 0.12 3.70 6.67 40.99 0.27 3.98 16 9 C 0.02 0.78 6.73 41.06 0.28 1.05 16 10 C -0.01 -0.36 11.52 83.73 0.96 0.60 16 11 N -0.27 -10.70 3.44 -346.81 -1.19 -11.89 16 12 C 0.12 4.69 6.39 86.38 0.55 5.24 16 13 C 0.02 1.18 5.10 29.85 0.15 1.34 16 14 C -0.54 -28.76 9.11 25.60 0.23 -28.52 16 15 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 17 N -0.93 -56.58 13.29 21.45 0.28 -56.30 16 18 Si 0.97 42.44 29.54 68.60 2.03 44.46 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 N -0.11 -4.89 12.88 37.02 0.48 -4.41 16 23 N -0.28 -11.22 10.76 -49.30 -0.53 -11.75 16 24 C -0.20 -5.43 6.62 24.88 0.16 -5.27 16 25 C -0.07 -1.65 9.68 71.24 0.69 -0.96 16 26 S 0.22 4.50 22.99 -56.49 -1.30 3.20 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.06 0.38 7.87 -2.39 -0.02 0.36 16 29 H 0.05 0.44 8.09 -2.38 -0.02 0.42 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 0.83 7.87 -2.39 -0.02 0.81 16 33 H 0.22 5.77 8.06 -2.91 -0.02 5.75 16 34 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.13 4.01 8.07 -2.38 -0.02 3.99 16 36 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 37 H 0.00 -0.03 8.12 -2.38 -0.02 -0.05 16 38 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.07 1.93 6.83 -2.39 -0.02 1.92 16 Total: -1.00 -71.99 367.78 3.73 -68.26 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.04 Total: 10.02 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.33 Total: -18.02 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -2.86 Total: -99.98 kcal Atomic # 8 Polarization: -6.43 SS G_CDS: -1.52 Total: -7.94 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: 4.50 SS G_CDS: -1.30 Total: 3.20 kcal Total: -71.99 3.73 -68.26 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887491649.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.493 kcal (2) G-P(sol) polarization free energy of solvation -71.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds