Wall clock time and date at job start Tue Mar 31 2020 13:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.50701 * 109.47181 * 270.00226 * 3 2 1 5 5 H 1.08003 * 119.99995 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00219 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00517 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00052 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47257 * 89.99762 * 8 6 4 10 10 H 1.48491 * 109.47630 * 209.99911 * 8 6 4 11 11 H 1.48511 * 109.47074 * 329.99921 * 8 6 4 12 12 C 1.34781 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21347 * 119.99887 * 184.99726 * 12 2 1 14 14 C 1.49449 * 120.00103 * 4.99822 * 12 2 1 15 15 O 1.21339 * 120.00210 * 275.21944 * 14 12 2 16 16 N 1.34783 * 119.99730 * 95.21273 * 14 12 2 17 17 C 1.46925 * 120.62963 * 354.67429 * 16 14 12 18 18 C 1.53624 * 108.54124 * 126.36701 * 17 16 14 19 19 C 1.53045 * 109.24345 * 54.85561 * 18 17 16 20 20 C 1.52993 * 109.44886 * 178.49533 * 19 18 17 21 21 F 1.39902 * 109.47092 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47661 * 300.06095 * 20 19 18 23 23 F 1.39903 * 109.47330 * 60.06292 * 20 19 18 24 24 C 1.53038 * 109.53677 * 298.51063 * 19 18 17 25 25 C 1.46920 * 120.62780 * 174.95101 * 16 14 12 26 26 H 1.08997 * 109.46782 * 264.80717 * 1 2 3 27 27 H 1.08992 * 109.46939 * 24.81028 * 1 2 3 28 28 H 1.08996 * 109.46970 * 144.81129 * 1 2 3 29 29 H 1.09002 * 109.46978 * 29.99749 * 3 2 1 30 30 H 1.08993 * 109.47624 * 150.00015 * 3 2 1 31 31 H 0.96998 * 120.00146 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.58801 * 246.20002 * 17 16 14 33 33 H 1.08998 * 109.59181 * 6.62536 * 17 16 14 34 34 H 1.08997 * 109.63540 * 294.86365 * 18 17 16 35 35 H 1.09007 * 109.43254 * 174.72057 * 18 17 16 36 36 H 1.08999 * 109.45683 * 58.53018 * 19 18 17 37 37 H 1.08998 * 109.50056 * 301.41471 * 24 19 18 38 38 H 1.09004 * 109.49766 * 181.31120 * 24 19 18 39 39 H 1.08998 * 109.59191 * 353.37895 * 25 16 14 40 40 H 1.09001 * 109.58405 * 113.66038 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2574 -2.9127 8 14 3.7331 3.9291 -0.2530 9 1 5.1067 3.5080 0.1228 10 1 3.7480 5.3559 -0.6644 11 1 2.8272 3.7592 0.9115 12 6 2.1389 -1.1673 -0.0005 13 8 3.3489 -1.1693 0.0910 14 6 1.3959 -2.4590 -0.1139 15 8 0.9327 -2.9816 0.8784 16 7 1.2403 -3.0434 -1.3184 17 6 1.6924 -2.3678 -2.5422 18 6 2.6219 -3.3193 -3.3107 19 6 1.8963 -4.6443 -3.5561 20 6 2.8042 -5.5822 -4.3539 21 9 2.1412 -6.7934 -4.5790 22 9 3.1241 -4.9901 -5.5803 23 9 3.9781 -5.8213 -3.6313 24 6 1.5465 -5.2924 -2.2145 25 6 0.6099 -4.3656 -1.4330 26 1 -0.3633 -0.0930 1.0234 27 1 -0.3633 0.9328 -0.4312 28 1 -0.3633 -0.8398 -0.5922 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 3.8219 4.0836 -3.0899 32 1 0.8306 -2.1161 -3.1603 33 1 2.2338 -1.4591 -2.2793 34 1 3.5239 -3.5013 -2.7265 35 1 2.8913 -2.8697 -4.2665 36 1 0.9816 -4.4585 -4.1190 37 1 2.4586 -5.4557 -1.6406 38 1 1.0505 -6.2470 -2.3899 39 1 0.4368 -4.7755 -0.4380 40 1 -0.3396 -4.2731 -1.9603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338723923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:31 Heat of formation + Delta-G solvation = -219.285775 kcal Electronic energy + Delta-G solvation = -28710.163872 eV Core-core repulsion = 24110.163410 eV Total energy + Delta-G solvation = -4600.000462 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29159 -47.78526 -47.73472 -40.70634 -38.67213 -37.45251 -35.24323 -33.71765 -32.64856 -31.50908 -28.95242 -27.74916 -26.36040 -24.87329 -23.74691 -23.16038 -21.67547 -20.49964 -18.90538 -18.47390 -18.41670 -17.85515 -17.27054 -17.09861 -16.51399 -16.15828 -15.10558 -14.98981 -14.82983 -14.70824 -14.52394 -14.21187 -14.13762 -13.97126 -13.91575 -13.87143 -13.83574 -13.31919 -13.17789 -13.03852 -12.69054 -12.51982 -12.46234 -12.20296 -11.64114 -11.58000 -11.52303 -11.17477 -11.10327 -11.08143 -10.94767 -10.62375 -10.26958 -9.68237 -9.08504 -8.92707 -8.70543 -7.98585 -6.21394 -4.22170 2.33005 2.40429 2.56157 3.06123 3.23111 3.29163 3.32035 3.54083 3.66309 3.73784 3.79735 4.29798 4.37407 4.44934 4.58498 4.71183 4.76431 4.97769 5.03583 5.12484 5.27793 5.31790 5.42109 5.44981 5.56369 5.68686 5.73434 5.75887 5.94599 6.01958 6.26977 6.49294 6.77103 7.01249 7.08340 7.44223 7.83302 7.89516 8.26367 8.48617 8.77938 9.37987 10.91048 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.003847 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.558804 B = 7276.112152 C = 8373.872582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.578 5.578 3 C 0.212 3.788 4 C -0.536 4.536 5 H 0.077 0.923 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.509 3.491 13 O -0.512 6.512 14 C 0.523 3.477 15 O -0.523 6.523 16 N -0.602 5.602 17 C 0.108 3.892 18 C -0.135 4.135 19 C -0.132 4.132 20 C 0.454 3.546 21 F -0.186 7.186 22 F -0.182 7.182 23 F -0.181 7.181 24 C -0.134 4.134 25 C 0.116 3.884 26 H 0.054 0.946 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.266 0.734 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.505 -15.911 -2.447 17.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.311 5.311 3 C 0.092 3.908 4 C -0.574 4.574 5 H 0.095 0.905 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.701 3.299 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.290 3.710 13 O -0.388 6.388 14 C 0.306 3.694 15 O -0.398 6.398 16 N -0.338 5.338 17 C -0.014 4.014 18 C -0.173 4.173 19 C -0.152 4.152 20 C 0.400 3.600 21 F -0.167 7.167 22 F -0.163 7.163 23 F -0.162 7.162 24 C -0.173 4.173 25 C -0.006 4.006 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.126 0.874 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.120 0.880 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.997 -16.027 -1.972 17.599 hybrid contribution 0.531 0.443 0.247 0.734 sum -6.466 -15.584 -1.726 16.961 Atomic orbital electron populations 1.21756 0.80024 1.03325 1.01180 1.47898 1.06872 1.06517 1.69842 1.19853 0.92770 0.79236 0.98903 1.21221 1.37790 1.07614 0.90787 0.90534 1.24806 0.94979 0.97223 0.95616 1.69871 1.40970 1.23547 1.18629 0.86877 0.80277 0.79867 0.82887 1.19763 1.20945 1.18959 1.19837 0.87906 0.84226 0.79073 1.90793 1.12700 1.85940 1.49322 1.20766 0.78675 0.86711 0.83207 1.90731 1.47667 1.65259 1.36115 1.48179 1.59801 1.19327 1.06446 1.21938 0.98506 0.96008 0.84945 1.22091 0.99433 0.92892 1.02857 1.22527 0.99337 0.95495 0.97845 1.20592 0.80389 0.80384 0.78596 1.93169 1.80543 1.48008 1.95002 1.93192 1.93472 1.83583 1.46068 1.93191 1.50611 1.94855 1.77541 1.22028 1.02144 0.99139 0.93949 1.21570 0.94878 0.81799 1.02386 0.92754 0.89527 0.92548 0.94501 0.94070 0.92359 0.89896 0.87435 0.89481 0.88663 0.86369 0.89788 0.89141 0.88016 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.23 59.85 0.61 1.85 16 2 N -0.58 -11.51 2.86 -183.47 -0.52 -12.04 16 3 C 0.21 4.89 4.24 -5.19 -0.02 4.87 16 4 C -0.54 -14.11 9.94 -34.44 -0.34 -14.45 16 5 H 0.08 2.14 8.06 -52.48 -0.42 1.72 16 6 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 7 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 8 Si 0.87 20.49 27.47 -169.99 -4.67 15.82 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 12 C 0.51 10.41 5.45 -11.58 -0.06 10.35 16 13 O -0.51 -12.28 16.65 5.50 0.09 -12.19 16 14 C 0.52 9.02 5.69 -11.58 -0.07 8.95 16 15 O -0.52 -9.81 16.53 5.51 0.09 -9.71 16 16 N -0.60 -8.02 2.97 -173.02 -0.51 -8.53 16 17 C 0.11 1.38 6.38 -3.49 -0.02 1.35 16 18 C -0.13 -1.48 5.13 -26.38 -0.14 -1.62 16 19 C -0.13 -1.16 2.12 -90.58 -0.19 -1.36 16 20 C 0.45 4.57 2.69 37.15 0.10 4.67 16 21 F -0.19 -1.84 16.77 2.25 0.04 -1.80 16 22 F -0.18 -2.00 16.77 2.25 0.04 -1.96 16 23 F -0.18 -2.10 16.33 2.25 0.04 -2.06 16 24 C -0.13 -1.15 5.11 -26.61 -0.14 -1.29 16 25 C 0.12 1.13 6.42 -3.71 -0.02 1.11 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.27 8.03 -51.93 -0.42 0.85 16 28 H 0.06 0.76 6.99 -51.93 -0.36 0.40 16 29 H 0.04 0.81 7.13 -51.93 -0.37 0.44 16 30 H 0.04 1.02 6.79 -51.93 -0.35 0.67 16 31 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.11 1.78 6.31 -51.93 -0.33 1.46 16 34 H 0.09 1.10 7.84 -51.93 -0.41 0.70 16 35 H 0.09 0.99 7.76 -51.92 -0.40 0.59 16 36 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 38 H 0.09 0.60 7.77 -51.93 -0.40 0.19 16 39 H 0.10 1.08 7.04 -51.93 -0.37 0.72 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 342.38 15.07 5.16 5.16 Total: -1.00 -32.29 342.38 -4.96 -37.25 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.10 Total: -1.35 kcal Atomic # 6 Polarization: 16.83 SS G_CDS: -0.39 Total: 16.44 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.26 Total: -45.59 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: 0.18 Total: -21.91 kcal Atomic # 9 Polarization: -5.94 SS G_CDS: 0.11 Total: -5.82 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -4.67 Total: 15.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.29 -4.96 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338723923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.036 kcal (2) G-P(sol) polarization free energy of solvation -32.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds