Wall clock time and date at job start Tue Mar 31 2020 13:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46499 * 120.00280 * 2 1 4 4 C 1.50701 * 109.47181 * 270.00226 * 3 2 1 5 5 H 1.08003 * 119.99995 * 359.97438 * 4 3 2 6 6 C 1.37872 * 120.00219 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00517 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00052 * 0.02562 * 6 4 3 9 9 H 1.48503 * 109.47257 * 89.99762 * 8 6 4 10 10 H 1.48491 * 109.47630 * 209.99911 * 8 6 4 11 11 H 1.48511 * 109.47074 * 329.99921 * 8 6 4 12 12 C 1.34781 * 119.99877 * 180.02562 * 2 1 3 13 13 O 1.21347 * 119.99887 * 184.99726 * 12 2 1 14 14 C 1.49449 * 120.00103 * 4.99822 * 12 2 1 15 15 O 1.21339 * 120.00210 * 275.21944 * 14 12 2 16 16 N 1.34783 * 119.99730 * 95.21273 * 14 12 2 17 17 C 1.46925 * 120.62963 * 354.67429 * 16 14 12 18 18 C 1.53624 * 108.54124 * 126.36701 * 17 16 14 19 19 C 1.53045 * 109.24345 * 54.85561 * 18 17 16 20 20 C 1.52993 * 109.44886 * 178.49533 * 19 18 17 21 21 F 1.39902 * 109.47092 * 180.02562 * 20 19 18 22 22 F 1.39895 * 109.47661 * 300.06095 * 20 19 18 23 23 F 1.39903 * 109.47330 * 60.06292 * 20 19 18 24 24 C 1.53038 * 109.53677 * 298.51063 * 19 18 17 25 25 C 1.46920 * 120.62780 * 174.95101 * 16 14 12 26 26 H 1.08997 * 109.46782 * 264.80717 * 1 2 3 27 27 H 1.08992 * 109.46939 * 24.81028 * 1 2 3 28 28 H 1.08996 * 109.46970 * 144.81129 * 1 2 3 29 29 H 1.09002 * 109.46978 * 29.99749 * 3 2 1 30 30 H 1.08993 * 109.47624 * 150.00015 * 3 2 1 31 31 H 0.96998 * 120.00146 * 179.97438 * 7 6 4 32 32 H 1.08997 * 109.58801 * 246.20002 * 17 16 14 33 33 H 1.08998 * 109.59181 * 6.62536 * 17 16 14 34 34 H 1.08997 * 109.63540 * 294.86365 * 18 17 16 35 35 H 1.09007 * 109.43254 * 174.72057 * 18 17 16 36 36 H 1.08999 * 109.45683 * 58.53018 * 19 18 17 37 37 H 1.08998 * 109.50056 * 301.41471 * 24 19 18 38 38 H 1.09004 * 109.49766 * 181.31120 * 24 19 18 39 39 H 1.08998 * 109.59191 * 353.37895 * 25 16 14 40 40 H 1.09001 * 109.58405 * 113.66038 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.3457 3.2574 -2.9127 8 14 3.7331 3.9291 -0.2530 9 1 5.1067 3.5080 0.1228 10 1 3.7480 5.3559 -0.6644 11 1 2.8272 3.7592 0.9115 12 6 2.1389 -1.1673 -0.0005 13 8 3.3489 -1.1693 0.0910 14 6 1.3959 -2.4590 -0.1139 15 8 0.9327 -2.9816 0.8784 16 7 1.2403 -3.0434 -1.3184 17 6 1.6924 -2.3678 -2.5422 18 6 2.6219 -3.3193 -3.3107 19 6 1.8963 -4.6443 -3.5561 20 6 2.8042 -5.5822 -4.3539 21 9 2.1412 -6.7934 -4.5790 22 9 3.1241 -4.9901 -5.5803 23 9 3.9781 -5.8213 -3.6313 24 6 1.5465 -5.2924 -2.2145 25 6 0.6099 -4.3656 -1.4330 26 1 -0.3633 -0.0930 1.0234 27 1 -0.3633 0.9328 -0.4312 28 1 -0.3633 -0.8398 -0.5922 29 1 1.6085 2.0284 0.5138 30 1 3.1500 1.1384 0.5138 31 1 3.8219 4.0836 -3.0899 32 1 0.8306 -2.1161 -3.1603 33 1 2.2338 -1.4591 -2.2793 34 1 3.5239 -3.5013 -2.7265 35 1 2.8913 -2.8697 -4.2665 36 1 0.9816 -4.4585 -4.1190 37 1 2.4586 -5.4557 -1.6406 38 1 1.0505 -6.2470 -2.3899 39 1 0.4368 -4.7755 -0.4380 40 1 -0.3396 -4.2731 -1.9603 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338723923.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:30 Heat of formation + Delta-G solvation = -240.855789 kcal Electronic energy + Delta-G solvation = -28711.099218 eV Core-core repulsion = 24110.163410 eV Total energy + Delta-G solvation = -4600.935808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.129 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -51.11742 -48.59936 -48.58769 -42.04410 -40.02225 -38.68258 -36.92061 -34.77281 -34.63964 -32.40472 -30.76689 -28.80990 -27.71605 -26.27121 -24.72753 -24.42648 -23.00746 -21.56949 -20.09027 -19.31037 -19.30203 -19.19915 -18.96974 -18.41600 -17.85795 -17.63218 -16.51719 -16.14541 -16.01305 -15.80366 -15.65595 -15.54856 -15.06933 -14.97823 -14.86728 -14.75834 -14.72769 -14.72149 -14.38328 -14.22236 -14.05818 -14.03740 -13.76122 -13.47558 -13.28717 -12.92563 -12.64855 -12.46027 -12.37329 -12.34560 -12.06737 -11.98782 -11.85869 -11.71302 -10.80604 -10.63317 -10.00942 -9.64702 -8.31802 -6.36737 0.97124 1.03769 1.36145 1.39983 1.46753 1.58958 1.74850 2.30658 2.32793 2.75788 2.91186 3.01610 3.02243 3.14498 3.57821 3.68398 3.85598 3.97088 4.11101 4.20962 4.22714 4.42998 4.53698 4.55279 4.59305 4.70722 4.71471 4.77822 4.82749 4.87547 4.90935 5.09762 5.25903 5.36262 5.43540 5.85003 6.18700 6.28792 6.59616 6.64110 6.85590 7.27389 8.83370 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.016019 B = 0.003847 C = 0.003343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.558804 B = 7276.112152 C = 8373.872582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.582 5.582 3 C 0.218 3.782 4 C -0.534 4.534 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.936 5.936 8 Si 0.934 3.066 9 H -0.279 1.279 10 H -0.277 1.277 11 H -0.240 1.240 12 C 0.501 3.499 13 O -0.562 6.562 14 C 0.529 3.471 15 O -0.541 6.541 16 N -0.589 5.589 17 C 0.110 3.890 18 C -0.131 4.131 19 C -0.123 4.123 20 C 0.455 3.545 21 F -0.181 7.181 22 F -0.188 7.188 23 F -0.194 7.194 24 C -0.129 4.129 25 C 0.113 3.887 26 H 0.074 0.926 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.022 0.978 31 H 0.268 0.732 32 H 0.116 0.884 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.152 0.848 37 H 0.064 0.936 38 H 0.121 0.879 39 H 0.096 0.904 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.710 -16.903 -2.265 19.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.313 5.313 3 C 0.097 3.903 4 C -0.572 4.572 5 H 0.066 0.934 6 C -0.177 4.177 7 N -0.576 5.576 8 Si 0.757 3.243 9 H -0.205 1.205 10 H -0.202 1.202 11 H -0.163 1.163 12 C 0.283 3.717 13 O -0.440 6.440 14 C 0.311 3.689 15 O -0.418 6.418 16 N -0.323 5.323 17 C -0.013 4.013 18 C -0.170 4.170 19 C -0.142 4.142 20 C 0.401 3.599 21 F -0.163 7.163 22 F -0.170 7.170 23 F -0.175 7.175 24 C -0.167 4.167 25 C -0.007 4.007 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.170 0.830 37 H 0.083 0.917 38 H 0.139 0.861 39 H 0.115 0.885 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -9.259 -17.052 -1.811 19.488 hybrid contribution 1.209 0.670 0.086 1.385 sum -8.050 -16.382 -1.724 18.334 Atomic orbital electron populations 1.22016 0.77043 1.04553 1.02932 1.47968 1.08744 1.05484 1.69149 1.19585 0.92894 0.81222 0.96616 1.21412 1.37009 1.06992 0.91787 0.93433 1.25626 0.95269 0.98742 0.98030 1.69997 1.42386 1.24373 1.20805 0.85921 0.79621 0.78196 0.80524 1.20498 1.20195 1.16334 1.20531 0.87656 0.85612 0.77886 1.90749 1.14914 1.86937 1.51417 1.20069 0.78845 0.85591 0.84345 1.90725 1.48862 1.65354 1.36843 1.48239 1.58559 1.20378 1.05152 1.21959 0.99599 0.94693 0.85020 1.22000 0.98479 0.94150 1.02345 1.22527 0.99836 0.93498 0.98332 1.20743 0.80122 0.80681 0.78364 1.93178 1.80311 1.47802 1.94970 1.93182 1.93553 1.83702 1.46525 1.93172 1.51561 1.94961 1.77824 1.22024 1.01424 1.00142 0.93152 1.21927 0.96303 0.79509 1.02984 0.90788 0.88860 0.90658 0.92399 0.95992 0.92249 0.86621 0.91863 0.91920 0.88155 0.82986 0.91697 0.86097 0.88542 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.20 10.23 127.77 1.31 3.50 16 2 N -0.58 -23.06 2.86 -852.74 -2.44 -25.50 16 3 C 0.22 10.04 4.24 85.63 0.36 10.41 16 4 C -0.53 -28.66 9.94 25.60 0.25 -28.40 16 5 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 6 C 0.02 1.25 5.47 84.65 0.46 1.71 16 7 N -0.94 -55.31 13.96 21.45 0.30 -55.01 16 8 Si 0.93 42.14 27.47 68.60 1.88 44.03 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.24 -9.78 6.54 99.48 0.65 -9.13 16 12 C 0.50 20.86 5.45 87.27 0.48 21.33 16 13 O -0.56 -28.12 16.65 -3.24 -0.05 -28.18 16 14 C 0.53 17.95 5.69 87.27 0.50 18.45 16 15 O -0.54 -19.73 16.53 -3.21 -0.05 -19.79 16 16 N -0.59 -14.80 2.97 -819.66 -2.43 -17.23 16 17 C 0.11 2.69 6.38 86.51 0.55 3.24 16 18 C -0.13 -2.81 5.13 30.82 0.16 -2.65 16 19 C -0.12 -1.82 2.12 -10.77 -0.02 -1.85 16 20 C 0.45 8.28 2.69 71.98 0.19 8.47 16 21 F -0.18 -3.10 16.77 44.97 0.75 -2.34 16 22 F -0.19 -3.86 16.77 44.97 0.75 -3.11 16 23 F -0.19 -4.38 16.33 44.97 0.73 -3.64 16 24 C -0.13 -1.84 5.11 30.67 0.16 -1.68 16 25 C 0.11 1.84 6.42 86.36 0.55 2.39 16 26 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 2.56 8.03 -2.39 -0.02 2.54 16 28 H 0.07 1.87 6.99 -2.39 -0.02 1.85 16 29 H 0.06 2.43 7.13 -2.39 -0.02 2.41 16 30 H 0.02 1.10 6.79 -2.39 -0.02 1.09 16 31 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 32 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.06 2.18 6.31 -2.39 -0.02 2.16 16 34 H 0.06 1.65 7.84 -2.39 -0.02 1.63 16 35 H 0.10 2.04 7.76 -2.38 -0.02 2.02 16 36 H 0.15 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 38 H 0.12 1.08 7.77 -2.39 -0.02 1.06 16 39 H 0.10 1.78 7.04 -2.39 -0.02 1.76 16 40 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -73.04 342.38 5.42 -67.62 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 1.02 Total: 8.22 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 4.95 Total: 34.93 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -4.57 Total: -97.74 kcal Atomic # 8 Polarization: -47.86 SS G_CDS: -0.11 Total: -47.96 kcal Atomic # 9 Polarization: -11.33 SS G_CDS: 2.24 Total: -9.09 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.03 kcal Total: -73.04 5.42 -67.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338723923.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.239 kcal (2) G-P(sol) polarization free energy of solvation -73.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds