Wall clock time and date at job start Tue Mar 31 2020 13:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34751 * 117.00022 * 2 1 4 4 O 1.21498 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.47480 * 119.99777 * 180.02562 * 3 2 1 6 6 C 1.39775 * 120.06619 * 359.97438 * 5 3 2 7 7 C 1.37776 * 120.02968 * 179.97438 * 6 5 3 8 8 C 1.38838 * 120.16943 * 359.97438 * 7 6 5 9 9 O 1.35771 * 119.92949 * 180.02562 * 8 7 6 10 10 C 1.39556 * 120.13463 * 0.03076 * 8 7 6 11 11 N 1.40147 * 120.01341 * 179.97438 * 10 8 7 12 12 C 1.34778 * 119.99655 * 214.94837 * 11 10 8 13 13 O 1.21300 * 119.99898 * 355.52432 * 12 11 10 14 14 C 1.50697 * 120.00404 * 175.52492 * 12 11 10 15 15 H 1.08998 * 109.46705 * 39.99488 * 14 12 11 16 16 N 1.46900 * 109.47563 * 159.99558 * 14 12 11 17 17 C 1.53001 * 109.46927 * 279.99739 * 14 12 11 18 18 C 1.53003 * 109.47118 * 174.99638 * 17 14 12 19 19 C 1.50693 * 109.47163 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00147 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47155 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46780 * 120.00044 * 23 21 19 26 26 H 1.48492 * 109.47033 * 240.00140 * 23 21 19 27 27 C 1.38281 * 119.96570 * 0.22294 * 10 8 7 28 28 H 1.09007 * 109.47544 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47636 * 59.99952 * 1 2 3 30 30 H 1.08998 * 109.47648 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.98976 * 359.95528 * 6 5 3 32 32 H 1.08003 * 119.91450 * 179.97438 * 7 6 5 33 33 H 0.96697 * 113.99789 * 270.01949 * 9 8 7 34 34 H 0.97000 * 120.00645 * 34.93823 * 11 10 8 35 35 H 1.00895 * 111.00118 * 296.05135 * 16 14 12 36 36 H 1.00904 * 110.99405 * 60.00085 * 16 14 12 37 37 H 1.09003 * 109.47263 * 55.00003 * 17 14 12 38 38 H 1.08996 * 109.47527 * 294.99777 * 17 14 12 39 39 H 1.08993 * 109.46759 * 60.00047 * 18 17 14 40 40 H 1.09008 * 109.46879 * 300.00157 * 18 17 14 41 41 H 0.97002 * 119.99481 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.08298 * 179.75351 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.2991 0.1064 -0.0006 7 6 5.6749 0.1793 -0.0016 8 6 6.3081 1.4148 -0.0033 9 8 7.6642 1.4810 -0.0048 10 6 5.5536 2.5888 -0.0032 11 7 6.1954 3.8347 -0.0042 12 6 5.6540 4.8722 0.6644 13 8 4.5719 4.7509 1.1990 14 6 6.3929 6.1829 0.7479 15 1 6.8626 6.3969 -0.2121 16 7 5.4482 7.2573 1.0813 17 6 7.4679 6.0940 1.8330 18 6 8.2994 7.3784 1.8336 19 6 9.3586 7.2907 2.9019 20 1 9.4312 6.4073 3.5191 21 6 10.2343 8.3385 3.0921 22 7 10.1456 9.4143 2.3409 23 14 11.5469 8.2300 4.4170 24 1 11.4361 6.9255 5.1178 25 1 12.8899 8.3441 3.7936 26 1 11.3583 9.3339 5.3921 27 6 4.1724 2.5221 0.0032 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.8096 -0.8564 0.0006 32 1 6.2623 -0.7270 -0.0012 33 1 8.0580 1.5005 0.8781 34 1 7.0293 3.9503 -0.4860 35 1 4.7657 7.3790 0.3483 36 1 4.9994 7.0819 1.9678 37 1 8.1167 5.2413 1.6328 38 1 6.9927 5.9685 2.8059 39 1 7.6506 8.2310 2.0338 40 1 8.7747 7.5039 0.8606 41 1 10.7620 10.1513 2.4745 42 1 3.5866 3.4294 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424192525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:19 Heat of formation + Delta-G solvation = -141.604817 kcal Electronic energy + Delta-G solvation = -26524.032868 eV Core-core repulsion = 22469.257645 eV Total energy + Delta-G solvation = -4054.775223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.19426 -40.42957 -39.22607 -37.10711 -36.51400 -35.45313 -34.90707 -32.86336 -30.88742 -30.28095 -30.06979 -27.91639 -26.48492 -24.31486 -24.17736 -22.74412 -21.29480 -20.73508 -19.96066 -18.93036 -18.45742 -17.61641 -17.12625 -16.63958 -16.59315 -16.22032 -15.87610 -15.55851 -15.48814 -14.95409 -14.40806 -14.28857 -14.09841 -13.98387 -13.73129 -13.59852 -12.99709 -12.75075 -12.57229 -12.37939 -12.27970 -12.08321 -11.63477 -11.26911 -11.11803 -10.94915 -10.86443 -10.74995 -10.65644 -10.53741 -10.15938 -9.86911 -9.45139 -9.20786 -9.03960 -8.49881 -8.39432 -8.27967 -5.97752 -4.00162 0.25124 0.94082 2.10869 2.32192 2.55515 2.94458 3.31268 3.32383 3.39104 3.42216 3.79982 4.38289 4.46138 4.49533 4.67762 4.75401 4.80210 4.86088 4.89294 5.01774 5.09645 5.20582 5.37544 5.40871 5.49761 5.64981 5.70462 5.85115 5.92900 6.02402 6.10122 6.33015 6.48037 6.55158 6.99401 7.15786 7.25028 7.39325 7.45736 7.69265 7.71753 7.90555 8.02303 8.08112 8.43254 9.07775 9.63293 11.13120 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002560 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.210086 B =10936.946380 C =11802.910287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.510 3.490 4 O -0.498 6.498 5 C -0.123 4.123 6 C -0.064 4.064 7 C -0.141 4.141 8 C 0.119 3.881 9 O -0.491 6.491 10 C 0.116 3.884 11 N -0.668 5.668 12 C 0.481 3.519 13 O -0.530 6.530 14 C 0.082 3.918 15 H 0.103 0.897 16 N -0.805 5.805 17 C -0.095 4.095 18 C 0.031 3.969 19 C -0.523 4.523 20 H 0.052 0.948 21 C 0.058 3.942 22 N -0.891 5.891 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.284 1.284 27 C -0.045 4.045 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.143 0.857 32 H 0.142 0.858 33 H 0.399 0.601 34 H 0.420 0.580 35 H 0.336 0.664 36 H 0.349 0.651 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.036 0.964 40 H 0.014 0.986 41 H 0.259 0.741 42 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.459 -21.686 -7.548 26.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.355 3.645 4 O -0.386 6.386 5 C -0.125 4.125 6 C -0.084 4.084 7 C -0.160 4.160 8 C 0.071 3.929 9 O -0.303 6.303 10 C 0.020 3.980 11 N -0.314 5.314 12 C 0.268 3.732 13 O -0.405 6.405 14 C -0.034 4.034 15 H 0.121 0.879 16 N -0.333 5.333 17 C -0.134 4.134 18 C -0.006 4.006 19 C -0.561 4.561 20 H 0.071 0.929 21 C -0.144 4.144 22 N -0.531 5.531 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.210 1.210 27 C -0.066 4.066 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.161 0.839 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.258 0.742 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.032 0.968 41 H 0.069 0.931 42 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.782 -20.707 -7.757 26.056 hybrid contribution 0.367 -0.718 0.961 1.254 sum -13.415 -21.425 -6.797 26.176 Atomic orbital electron populations 1.23293 0.75840 1.03772 1.02807 1.86530 1.23659 1.32572 1.84549 1.21055 0.89000 0.81504 0.72960 1.90879 1.66674 1.35941 1.45149 1.18922 0.89222 0.94364 1.09957 1.21278 0.93120 0.98022 0.95931 1.21221 0.94556 0.97129 1.03081 1.18547 0.83457 0.90990 0.99923 1.84738 1.15185 1.96031 1.34316 1.18018 0.91454 0.85642 1.02881 1.43775 1.27490 1.07934 1.52238 1.23257 0.86616 0.87284 0.76003 1.90686 1.21200 1.83165 1.45438 1.21902 0.94639 0.83758 1.03102 0.87936 1.58993 1.23410 1.42758 1.08112 1.21688 0.94386 1.02374 0.94908 1.19024 0.93582 0.91244 0.96767 1.21284 1.14876 1.02030 1.17911 0.92945 1.25000 0.97691 0.95472 0.96203 1.69981 1.37639 1.06139 1.39297 0.86588 0.81749 0.77971 0.81966 1.19880 1.21081 1.21039 1.21331 0.92750 0.98185 0.94328 0.91712 0.91758 0.87891 0.83921 0.83975 0.74264 0.74236 0.85184 0.83624 0.92704 0.92726 0.94596 0.96767 0.93102 0.82362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.32 16 2 O -0.36 -3.51 9.80 -40.63 -0.40 -3.91 16 3 C 0.51 6.39 7.89 34.50 0.27 6.67 16 4 O -0.50 -7.73 16.13 -19.26 -0.31 -8.04 16 5 C -0.12 -1.45 5.87 -104.99 -0.62 -2.07 16 6 C -0.06 -0.58 9.60 -39.18 -0.38 -0.95 16 7 C -0.14 -1.20 9.96 -39.53 -0.39 -1.59 16 8 C 0.12 1.21 6.73 -38.87 -0.26 0.94 16 9 O -0.49 -4.38 13.04 -19.02 -0.25 -4.63 16 10 C 0.12 1.43 6.32 -83.55 -0.53 0.90 16 11 N -0.67 -8.25 5.19 -9.78 -0.05 -8.30 16 12 C 0.48 7.17 6.91 -10.99 -0.08 7.10 16 13 O -0.53 -9.25 13.67 5.54 0.08 -9.17 16 14 C 0.08 1.30 3.15 -68.86 -0.22 1.08 16 15 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 16 N -0.80 -13.01 8.44 -5.65 -0.05 -13.06 16 17 C -0.10 -1.82 4.78 -26.73 -0.13 -1.95 16 18 C 0.03 0.76 4.86 -27.88 -0.14 0.63 16 19 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 20 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 23 Si 0.89 21.41 29.54 -169.99 -5.02 16.38 16 24 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 27 C -0.05 -0.62 8.24 -39.00 -0.32 -0.94 16 28 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.14 0.95 7.60 -52.49 -0.40 0.55 16 32 H 0.14 0.85 8.06 -52.48 -0.42 0.43 16 33 H 0.40 2.20 9.06 45.56 0.41 2.62 16 34 H 0.42 4.41 8.57 -40.82 -0.35 4.06 16 35 H 0.34 4.72 9.06 -39.29 -0.36 4.36 16 36 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.04 0.97 7.75 -51.93 -0.40 0.57 16 40 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 41 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.16 2.53 5.78 -52.49 -0.30 2.23 16 LS Contribution 367.34 15.07 5.54 5.54 Total: -1.00 -34.91 367.34 -6.51 -41.43 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -4.66 Total: 11.60 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -2.12 Total: -2.06 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.64 Total: -47.14 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.88 Total: -25.75 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.91 -6.51 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.179 kcal (2) G-P(sol) polarization free energy of solvation -34.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds