Wall clock time and date at job start Tue Mar 31 2020 13:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34751 * 117.00022 * 2 1 4 4 O 1.21498 * 119.99992 * 0.02562 * 3 2 1 5 5 C 1.47480 * 119.99777 * 180.02562 * 3 2 1 6 6 C 1.39775 * 120.06619 * 359.97438 * 5 3 2 7 7 C 1.37776 * 120.02968 * 179.97438 * 6 5 3 8 8 C 1.38838 * 120.16943 * 359.97438 * 7 6 5 9 9 O 1.35771 * 119.92949 * 180.02562 * 8 7 6 10 10 C 1.39556 * 120.13463 * 0.03076 * 8 7 6 11 11 N 1.40147 * 120.01341 * 179.97438 * 10 8 7 12 12 C 1.34778 * 119.99655 * 214.94837 * 11 10 8 13 13 O 1.21300 * 119.99898 * 355.52432 * 12 11 10 14 14 C 1.50697 * 120.00404 * 175.52492 * 12 11 10 15 15 H 1.08998 * 109.46705 * 39.99488 * 14 12 11 16 16 N 1.46900 * 109.47563 * 159.99558 * 14 12 11 17 17 C 1.53001 * 109.46927 * 279.99739 * 14 12 11 18 18 C 1.53003 * 109.47118 * 174.99638 * 17 14 12 19 19 C 1.50693 * 109.47163 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00147 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99980 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99925 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99892 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47155 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46780 * 120.00044 * 23 21 19 26 26 H 1.48492 * 109.47033 * 240.00140 * 23 21 19 27 27 C 1.38281 * 119.96570 * 0.22294 * 10 8 7 28 28 H 1.09007 * 109.47544 * 299.99944 * 1 2 3 29 29 H 1.08997 * 109.47636 * 59.99952 * 1 2 3 30 30 H 1.08998 * 109.47648 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.98976 * 359.95528 * 6 5 3 32 32 H 1.08003 * 119.91450 * 179.97438 * 7 6 5 33 33 H 0.96697 * 113.99789 * 270.01949 * 9 8 7 34 34 H 0.97000 * 120.00645 * 34.93823 * 11 10 8 35 35 H 1.00895 * 111.00118 * 296.05135 * 16 14 12 36 36 H 1.00904 * 110.99405 * 60.00085 * 16 14 12 37 37 H 1.09003 * 109.47263 * 55.00003 * 17 14 12 38 38 H 1.08996 * 109.47527 * 294.99777 * 17 14 12 39 39 H 1.08993 * 109.46759 * 60.00047 * 18 17 14 40 40 H 1.09008 * 109.46879 * 300.00157 * 18 17 14 41 41 H 0.97002 * 119.99481 * 180.02562 * 22 21 19 42 42 H 1.07995 * 120.08298 * 179.75351 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2196 0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.2991 0.1064 -0.0006 7 6 5.6749 0.1793 -0.0016 8 6 6.3081 1.4148 -0.0033 9 8 7.6642 1.4810 -0.0048 10 6 5.5536 2.5888 -0.0032 11 7 6.1954 3.8347 -0.0042 12 6 5.6540 4.8722 0.6644 13 8 4.5719 4.7509 1.1990 14 6 6.3929 6.1829 0.7479 15 1 6.8626 6.3969 -0.2121 16 7 5.4482 7.2573 1.0813 17 6 7.4679 6.0940 1.8330 18 6 8.2994 7.3784 1.8336 19 6 9.3586 7.2907 2.9019 20 1 9.4312 6.4073 3.5191 21 6 10.2343 8.3385 3.0921 22 7 10.1456 9.4143 2.3409 23 14 11.5469 8.2300 4.4170 24 1 11.4361 6.9255 5.1178 25 1 12.8899 8.3441 3.7936 26 1 11.3583 9.3339 5.3921 27 6 4.1724 2.5221 0.0032 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 3.8096 -0.8564 0.0006 32 1 6.2623 -0.7270 -0.0012 33 1 8.0580 1.5005 0.8781 34 1 7.0293 3.9503 -0.4860 35 1 4.7657 7.3790 0.3483 36 1 4.9994 7.0819 1.9678 37 1 8.1167 5.2413 1.6328 38 1 6.9927 5.9685 2.8059 39 1 7.6506 8.2310 2.0338 40 1 8.7747 7.5039 0.8606 41 1 10.7620 10.1513 2.4745 42 1 3.5866 3.4294 0.0073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424192525.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:18 Heat of formation + Delta-G solvation = -169.220841 kcal Electronic energy + Delta-G solvation = -26525.230388 eV Core-core repulsion = 22469.257645 eV Total energy + Delta-G solvation = -4055.972743 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.14922 -41.40692 -40.18752 -37.88926 -37.40945 -36.90002 -35.99159 -34.83571 -31.95721 -31.69199 -31.10033 -28.62672 -28.06227 -25.79181 -25.07902 -23.87227 -22.38065 -22.07288 -21.25702 -19.76771 -19.31821 -18.77062 -18.29178 -18.02908 -17.49047 -17.47492 -17.00807 -16.61910 -16.49471 -16.34486 -16.04599 -15.32050 -15.14923 -14.91632 -14.83887 -14.52139 -14.29286 -13.89159 -13.79205 -13.48029 -13.47242 -13.37583 -12.95240 -12.82563 -12.51857 -12.28185 -12.07054 -11.88478 -11.86235 -11.76697 -11.65179 -11.44478 -11.21750 -10.99815 -10.49119 -10.02523 -9.72845 -9.33049 -8.13330 -6.23266 -0.58728 0.08934 1.17603 1.42116 1.42992 1.44897 1.52909 1.55506 1.92518 2.44978 2.50249 3.05147 3.20217 3.44227 3.61653 3.67029 3.76337 4.02613 4.05169 4.15448 4.25650 4.27405 4.30029 4.32434 4.66106 4.70653 4.76289 4.86313 4.92447 5.06038 5.13602 5.19269 5.24045 5.26020 5.58307 5.61078 5.84610 5.98916 6.01181 6.24284 6.30265 6.45414 6.56831 6.64901 6.92287 6.95835 7.44937 8.98073 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020165 B = 0.002560 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.210086 B =10936.946380 C =11802.910287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.511 3.489 4 O -0.541 6.541 5 C -0.141 4.141 6 C -0.044 4.044 7 C -0.130 4.130 8 C 0.131 3.869 9 O -0.494 6.494 10 C 0.092 3.908 11 N -0.654 5.654 12 C 0.488 3.512 13 O -0.557 6.557 14 C 0.090 3.910 15 H 0.116 0.884 16 N -0.817 5.817 17 C -0.081 4.081 18 C 0.038 3.962 19 C -0.540 4.540 20 H 0.058 0.942 21 C 0.000 4.000 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.262 1.262 25 H -0.278 1.278 26 H -0.283 1.283 27 C -0.065 4.065 28 H 0.058 0.942 29 H 0.061 0.939 30 H 0.142 0.858 31 H 0.173 0.827 32 H 0.179 0.821 33 H 0.416 0.584 34 H 0.429 0.571 35 H 0.347 0.653 36 H 0.346 0.654 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.005 0.995 40 H -0.004 1.004 41 H 0.261 0.739 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.377 -25.110 -7.383 28.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.357 3.643 4 O -0.433 6.433 5 C -0.143 4.143 6 C -0.063 4.063 7 C -0.148 4.148 8 C 0.084 3.916 9 O -0.308 6.308 10 C -0.004 4.004 11 N -0.301 5.301 12 C 0.275 3.725 13 O -0.435 6.435 14 C -0.026 4.026 15 H 0.134 0.866 16 N -0.346 5.346 17 C -0.119 4.119 18 C 0.001 3.999 19 C -0.578 4.578 20 H 0.076 0.924 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.785 3.215 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.209 1.209 27 C -0.086 4.086 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.160 0.840 31 H 0.190 0.810 32 H 0.196 0.804 33 H 0.278 0.722 34 H 0.269 0.731 35 H 0.161 0.839 36 H 0.160 0.840 37 H 0.092 0.908 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.014 0.986 41 H 0.070 0.930 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.681 -24.187 -7.605 28.349 hybrid contribution 0.003 0.249 0.866 0.902 sum -12.678 -23.938 -6.739 27.913 Atomic orbital electron populations 1.23625 0.74180 1.06185 1.02492 1.86517 1.25254 1.30902 1.83828 1.21300 0.89421 0.81637 0.71910 1.90856 1.67595 1.37421 1.47382 1.18998 0.89120 0.94845 1.11289 1.21607 0.93320 0.97981 0.93389 1.21599 0.94446 0.97603 1.01182 1.18632 0.83923 0.90671 0.98419 1.84704 1.14294 1.95935 1.35824 1.18158 0.91269 0.86098 1.04827 1.43524 1.27452 1.07687 1.51449 1.22822 0.86119 0.87369 0.76156 1.90692 1.22381 1.83527 1.46917 1.21690 0.93921 0.84557 1.02448 0.86616 1.58991 1.23917 1.43220 1.08489 1.21404 0.94765 1.00047 0.95668 1.18838 0.93143 0.92908 0.95020 1.21747 1.15434 1.02177 1.18442 0.92406 1.25915 1.00187 0.95133 0.98563 1.70114 1.38826 1.06980 1.41150 0.85483 0.78774 0.78312 0.78952 1.18608 1.20375 1.20933 1.21121 0.93306 0.97880 0.96285 0.92277 0.91973 0.84030 0.80951 0.80365 0.72247 0.73137 0.83947 0.83987 0.90823 0.93779 0.97693 0.98598 0.92994 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.35 -6.39 9.80 -56.61 -0.55 -6.94 16 3 C 0.51 12.86 7.89 70.26 0.55 13.41 16 4 O -0.54 -17.67 16.13 19.84 0.32 -17.35 16 5 C -0.14 -3.24 5.87 -20.11 -0.12 -3.36 16 6 C -0.04 -0.66 9.60 22.53 0.22 -0.44 16 7 C -0.13 -1.68 9.96 22.30 0.22 -1.46 16 8 C 0.13 2.31 6.73 22.73 0.15 2.46 16 9 O -0.49 -7.14 13.04 -90.98 -1.19 -8.33 16 10 C 0.09 2.19 6.32 38.14 0.24 2.43 16 11 N -0.65 -15.81 5.19 -303.24 -1.57 -17.38 16 12 C 0.49 14.72 6.91 87.66 0.61 15.32 16 13 O -0.56 -20.21 13.67 -3.09 -0.04 -20.26 16 14 C 0.09 2.86 3.15 44.17 0.14 3.00 16 15 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 16 N -0.82 -27.31 8.44 -171.80 -1.45 -28.76 16 17 C -0.08 -3.08 4.78 30.60 0.15 -2.93 16 18 C 0.04 1.93 4.86 29.85 0.15 2.07 16 19 C -0.54 -29.91 9.11 25.60 0.23 -29.67 16 20 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 21 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 22 N -0.93 -56.22 13.29 21.45 0.28 -55.94 16 23 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 24 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 27 C -0.07 -1.81 8.24 22.64 0.19 -1.62 16 28 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.14 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.17 1.53 7.60 -2.91 -0.02 1.51 16 32 H 0.18 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.42 3.13 9.06 -74.06 -0.67 2.45 16 34 H 0.43 8.48 8.57 -92.71 -0.79 7.69 16 35 H 0.35 10.10 9.06 -89.70 -0.81 9.29 16 36 H 0.35 11.89 8.58 -89.69 -0.77 11.12 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.00 0.26 7.75 -2.39 -0.02 0.24 16 40 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 41 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.12 4.31 5.78 -2.91 -0.02 4.29 16 Total: -1.00 -78.16 367.34 0.27 -77.89 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -1.94 Total: 30.04 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 4.38 Total: 1.20 kcal Atomic # 7 Polarization: -99.34 SS G_CDS: -2.74 Total: -102.07 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -1.46 Total: -52.88 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -78.16 0.27 -77.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424192525.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.333 kcal (2) G-P(sol) polarization free energy of solvation -78.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds