Wall clock time and date at job start Tue Mar 31 2020 13:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35970 * 116.99558 * 2 1 4 4 C 1.38742 * 119.98434 * 0.02562 * 3 2 1 5 5 C 1.38075 * 120.01387 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.98265 * 359.97330 * 5 4 3 7 7 N 1.40111 * 120.00943 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00188 * 35.29008 * 7 6 5 9 9 O 1.21296 * 119.99863 * 355.54397 * 8 7 6 10 10 C 1.50698 * 119.99860 * 175.27073 * 8 7 6 11 11 C 1.53007 * 109.47049 * 180.27573 * 10 8 7 12 12 C 1.52999 * 109.46811 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46811 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47049 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00387 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99860 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99731 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47066 * 60.00122 * 18 16 14 20 20 H 1.48496 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46998 * 299.99722 * 18 16 14 22 22 C 1.38820 * 119.97125 * 0.25467 * 6 5 4 23 23 N 1.48015 * 120.00578 * 179.74390 * 22 6 5 24 24 O 1.21805 * 119.99549 * 185.42069 * 23 22 6 25 25 O 1.21794 * 119.99974 * 5.42219 * 23 22 6 26 26 C 1.38116 * 119.98549 * 359.51664 * 22 6 5 27 27 H 1.08999 * 109.47197 * 60.00122 * 1 2 3 28 28 H 1.09006 * 109.46512 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47081 * 299.99703 * 1 2 3 30 30 H 1.07994 * 119.99922 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00577 * 179.97438 * 5 4 3 32 32 H 0.97004 * 119.99618 * 215.28406 * 7 6 5 33 33 H 1.09001 * 109.47332 * 300.26955 * 10 8 7 34 34 H 1.09000 * 109.47683 * 60.27481 * 10 8 7 35 35 H 1.09001 * 109.46549 * 299.99861 * 11 10 8 36 36 H 1.08994 * 109.47141 * 60.00146 * 11 10 8 37 37 H 1.09001 * 109.47424 * 299.99293 * 12 11 10 38 38 H 1.08994 * 109.47645 * 60.00383 * 12 11 10 39 39 H 1.09007 * 109.46794 * 300.00196 * 13 12 11 40 40 H 1.08999 * 109.47392 * 59.99736 * 13 12 11 41 41 H 0.97000 * 119.99759 * 179.97438 * 17 16 14 42 42 H 1.07994 * 119.99289 * 180.21378 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2902 2.3749 0.0005 5 6 1.9163 3.6055 0.0000 6 6 3.3031 3.6786 -0.0005 7 7 3.9391 4.9271 -0.0016 8 6 3.3963 5.9604 0.6721 9 8 2.3176 5.8328 1.2119 10 6 4.1324 7.2724 0.7600 11 6 3.3070 8.2664 1.5797 12 6 4.0541 9.5986 1.6684 13 6 3.2284 10.5928 2.4875 14 6 3.9645 11.9048 2.5754 15 1 4.9253 12.0182 2.0955 16 6 3.4113 12.9606 3.2686 17 7 2.2411 12.8226 3.8526 18 14 4.3234 14.5871 3.3770 19 1 4.5360 15.1274 2.0102 20 1 3.5215 15.5523 4.1710 21 1 5.6374 14.3748 4.0354 22 6 4.0590 2.5142 -0.0058 23 7 5.5371 2.5912 -0.0121 24 8 6.1994 1.5743 -0.1164 25 8 6.0910 3.6713 0.0870 26 6 3.4314 1.2838 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2118 2.3180 0.0014 31 1 1.3277 4.5109 0.0000 32 1 4.7701 5.0476 -0.4872 33 1 5.0971 7.1162 1.2428 34 1 4.2882 7.6697 -0.2430 35 1 2.3423 8.4226 1.0969 36 1 3.1513 7.8693 2.5827 37 1 5.0189 9.4428 2.1510 38 1 4.2094 9.9957 0.6653 39 1 2.2636 10.7486 2.0046 40 1 3.0726 10.1961 3.4907 41 1 1.8521 13.5652 4.3406 42 1 4.0193 0.3779 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588825838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:49 Heat of formation + Delta-G solvation = -60.259726 kcal Electronic energy + Delta-G solvation = -26048.959379 eV Core-core repulsion = 21997.711544 eV Total energy + Delta-G solvation = -4051.247835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65541 -41.08178 -40.14956 -38.04608 -36.96790 -35.08691 -34.77869 -32.70728 -32.43390 -30.68913 -29.55294 -27.80590 -26.73127 -25.70034 -23.93511 -22.83415 -22.16602 -20.55818 -20.05062 -19.88696 -19.07075 -18.23400 -17.82229 -17.59830 -17.33496 -16.56603 -16.36985 -16.16595 -15.81637 -14.84820 -14.67010 -14.50234 -14.29494 -14.11493 -13.57664 -13.53736 -13.20010 -12.65723 -12.41280 -12.06596 -11.93252 -11.87828 -11.75766 -11.65872 -11.51147 -11.46080 -10.99626 -10.60591 -10.57035 -10.48857 -10.45692 -10.24256 -9.98540 -9.64381 -9.27128 -9.02642 -8.53964 -8.31581 -5.96618 -3.99084 -0.59092 0.49555 0.91204 0.97158 2.26178 2.46307 2.64241 2.86872 3.35083 3.39374 3.41787 3.87846 4.05399 4.13496 4.36466 4.47295 4.50759 4.56317 4.58778 4.80438 4.92253 5.06755 5.19745 5.24893 5.32082 5.38864 5.40489 5.55090 5.74366 5.93712 6.06441 6.06815 6.21868 6.47535 6.56316 6.77865 6.91219 6.97747 7.17066 7.30199 7.71729 7.78557 7.87014 8.04238 8.46195 9.08323 9.64641 11.14673 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.002114 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.555185 B =13242.963650 C =14416.500232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.112 3.888 4 C -0.132 4.132 5 C -0.087 4.087 6 C 0.194 3.806 7 N -0.672 5.672 8 C 0.518 3.482 9 O -0.514 6.514 10 C -0.137 4.137 11 C -0.104 4.104 12 C -0.111 4.111 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C -0.043 4.043 23 N 0.039 4.961 24 O -0.150 6.150 25 O -0.169 6.169 26 C -0.076 4.076 27 H 0.060 0.940 28 H 0.107 0.893 29 H 0.061 0.939 30 H 0.151 0.849 31 H 0.168 0.832 32 H 0.424 0.576 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 -27.878 -11.777 30.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.065 3.935 4 C -0.152 4.152 5 C -0.107 4.107 6 C 0.095 3.905 7 N -0.324 5.324 8 C 0.309 3.691 9 O -0.388 6.388 10 C -0.176 4.176 11 C -0.142 4.142 12 C -0.149 4.149 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.130 4.130 23 N 0.556 4.444 24 O -0.368 6.368 25 O -0.378 6.378 26 C -0.096 4.096 27 H 0.079 0.921 28 H 0.125 0.875 29 H 0.080 0.920 30 H 0.169 0.831 31 H 0.186 0.814 32 H 0.267 0.733 33 H 0.120 0.880 34 H 0.117 0.883 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.716 -27.953 -11.249 30.360 hybrid contribution 0.991 1.032 -0.094 1.434 sum -2.725 -26.921 -11.343 29.340 Atomic orbital electron populations 1.23212 0.77289 1.04808 1.01864 1.86117 1.22099 1.25324 1.88667 1.18504 0.90912 0.85187 0.98923 1.21675 1.01589 0.91308 1.00615 1.21299 0.91531 0.99636 0.98276 1.17492 0.91887 0.84024 0.97107 1.44308 1.28534 1.07538 1.51982 1.21558 0.86006 0.85585 0.75990 1.90697 1.20944 1.82730 1.44393 1.21863 1.00907 0.90790 1.04058 1.21494 0.98555 0.94629 0.99501 1.21657 0.99041 0.93592 1.00570 1.19090 0.95032 0.92683 0.94863 1.21244 1.04861 0.96986 1.32834 0.92745 1.25043 0.95007 0.98899 0.95640 1.69959 1.16771 1.31962 1.34828 0.86660 0.79763 0.83517 0.78063 1.20273 1.21342 1.20245 1.20540 0.79330 0.94939 1.18178 1.43350 1.02985 1.00542 0.97562 1.94556 1.64205 1.25462 1.52548 1.94433 1.73001 1.16466 1.53926 1.19822 0.92549 0.96804 1.00446 0.92135 0.87495 0.92042 0.83113 0.81430 0.73304 0.87976 0.88320 0.91682 0.91654 0.93237 0.93307 0.96623 0.96607 0.92989 0.81867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.81 101.05 0.99 1.07 16 2 O -0.31 -2.13 10.50 -19.65 -0.21 -2.34 16 3 C 0.11 0.87 6.69 -39.22 -0.26 0.61 16 4 C -0.13 -0.96 9.03 -39.45 -0.36 -1.31 16 5 C -0.09 -0.83 8.69 -39.41 -0.34 -1.17 16 6 C 0.19 2.07 6.29 -83.62 -0.53 1.54 16 7 N -0.67 -7.20 4.55 -9.83 -0.04 -7.25 16 8 C 0.52 6.62 7.67 -10.99 -0.08 6.53 16 9 O -0.51 -7.99 13.44 5.54 0.07 -7.92 16 10 C -0.14 -1.68 5.70 -27.88 -0.16 -1.84 16 11 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 13 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 C -0.04 -0.45 6.86 -79.78 -0.55 -1.00 16 23 N 0.04 0.46 4.45 34.05 0.15 0.61 16 24 O -0.15 -1.83 18.46 -29.46 -0.54 -2.38 16 25 O -0.17 -2.07 16.02 -29.46 -0.47 -2.54 16 26 C -0.08 -0.67 9.49 -39.45 -0.37 -1.05 16 27 H 0.06 0.13 7.66 -51.93 -0.40 -0.27 16 28 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.16 7.66 -51.93 -0.40 -0.24 16 30 H 0.15 0.67 6.29 -52.49 -0.33 0.33 16 31 H 0.17 1.72 6.24 -52.49 -0.33 1.39 16 32 H 0.42 3.92 6.51 -40.82 -0.27 3.65 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.06 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.16 1.26 7.62 -52.49 -0.40 0.86 16 LS Contribution 362.22 15.07 5.46 5.46 Total: -1.00 -33.95 362.22 -7.80 -41.75 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -5.46 Total: -1.50 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -2.47 Total: -14.11 kcal Atomic # 7 Polarization: -34.06 SS G_CDS: 0.84 Total: -33.22 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -1.15 Total: -15.17 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.95 -7.80 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588825838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.514 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds