Wall clock time and date at job start Tue Mar 31 2020 13:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35970 * 116.99558 * 2 1 4 4 C 1.38742 * 119.98434 * 0.02562 * 3 2 1 5 5 C 1.38075 * 120.01387 * 180.02562 * 4 3 2 6 6 C 1.38874 * 119.98265 * 359.97330 * 5 4 3 7 7 N 1.40111 * 120.00943 * 179.97438 * 6 5 4 8 8 C 1.34773 * 120.00188 * 35.29008 * 7 6 5 9 9 O 1.21296 * 119.99863 * 355.54397 * 8 7 6 10 10 C 1.50698 * 119.99860 * 175.27073 * 8 7 6 11 11 C 1.53007 * 109.47049 * 180.27573 * 10 8 7 12 12 C 1.52999 * 109.46811 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46811 * 179.97438 * 12 11 10 14 14 C 1.50698 * 109.47049 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00387 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99860 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99731 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99849 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47066 * 60.00122 * 18 16 14 20 20 H 1.48496 * 109.46945 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.46998 * 299.99722 * 18 16 14 22 22 C 1.38820 * 119.97125 * 0.25467 * 6 5 4 23 23 N 1.48015 * 120.00578 * 179.74390 * 22 6 5 24 24 O 1.21805 * 119.99549 * 185.42069 * 23 22 6 25 25 O 1.21794 * 119.99974 * 5.42219 * 23 22 6 26 26 C 1.38116 * 119.98549 * 359.51664 * 22 6 5 27 27 H 1.08999 * 109.47197 * 60.00122 * 1 2 3 28 28 H 1.09006 * 109.46512 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47081 * 299.99703 * 1 2 3 30 30 H 1.07994 * 119.99922 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00577 * 179.97438 * 5 4 3 32 32 H 0.97004 * 119.99618 * 215.28406 * 7 6 5 33 33 H 1.09001 * 109.47332 * 300.26955 * 10 8 7 34 34 H 1.09000 * 109.47683 * 60.27481 * 10 8 7 35 35 H 1.09001 * 109.46549 * 299.99861 * 11 10 8 36 36 H 1.08994 * 109.47141 * 60.00146 * 11 10 8 37 37 H 1.09001 * 109.47424 * 299.99293 * 12 11 10 38 38 H 1.08994 * 109.47645 * 60.00383 * 12 11 10 39 39 H 1.09007 * 109.46794 * 300.00196 * 13 12 11 40 40 H 1.08999 * 109.47392 * 59.99736 * 13 12 11 41 41 H 0.97000 * 119.99759 * 179.97438 * 17 16 14 42 42 H 1.07994 * 119.99289 * 180.21378 * 26 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2902 2.3749 0.0005 5 6 1.9163 3.6055 0.0000 6 6 3.3031 3.6786 -0.0005 7 7 3.9391 4.9271 -0.0016 8 6 3.3963 5.9604 0.6721 9 8 2.3176 5.8328 1.2119 10 6 4.1324 7.2724 0.7600 11 6 3.3070 8.2664 1.5797 12 6 4.0541 9.5986 1.6684 13 6 3.2284 10.5928 2.4875 14 6 3.9645 11.9048 2.5754 15 1 4.9253 12.0182 2.0955 16 6 3.4113 12.9606 3.2686 17 7 2.2411 12.8226 3.8526 18 14 4.3234 14.5871 3.3770 19 1 4.5360 15.1274 2.0102 20 1 3.5215 15.5523 4.1710 21 1 5.6374 14.3748 4.0354 22 6 4.0590 2.5142 -0.0058 23 7 5.5371 2.5912 -0.0121 24 8 6.1994 1.5743 -0.1164 25 8 6.0910 3.6713 0.0870 26 6 3.4314 1.2838 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0278 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2118 2.3180 0.0014 31 1 1.3277 4.5109 0.0000 32 1 4.7701 5.0476 -0.4872 33 1 5.0971 7.1162 1.2428 34 1 4.2882 7.6697 -0.2430 35 1 2.3423 8.4226 1.0969 36 1 3.1513 7.8693 2.5827 37 1 5.0189 9.4428 2.1510 38 1 4.2094 9.9957 0.6653 39 1 2.2636 10.7486 2.0046 40 1 3.0726 10.1961 3.4907 41 1 1.8521 13.5652 4.3406 42 1 4.0193 0.3779 -0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588825838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:48 Heat of formation + Delta-G solvation = -80.612568 kcal Electronic energy + Delta-G solvation = -26049.841945 eV Core-core repulsion = 21997.711544 eV Total energy + Delta-G solvation = -4052.130400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.51647 -41.87725 -40.90909 -38.77584 -37.86281 -36.66708 -35.69106 -34.63154 -33.16625 -31.90107 -30.70234 -28.46376 -27.50829 -27.23433 -24.97734 -23.99736 -23.22914 -21.83786 -21.44289 -20.61726 -19.94979 -19.04284 -18.68905 -18.39356 -18.25978 -18.15544 -17.36140 -16.82055 -16.80748 -16.50809 -15.77783 -15.53606 -15.28422 -15.05719 -14.53837 -14.37176 -14.21146 -13.75361 -13.65196 -13.61516 -13.29573 -12.83826 -12.79340 -12.62782 -12.45920 -12.39892 -12.38014 -12.27330 -12.15829 -12.12843 -11.40938 -11.36145 -11.26358 -11.17983 -10.95644 -10.74937 -10.53188 -9.25324 -8.17968 -6.29480 -1.40195 -0.20964 0.10361 0.16386 1.32467 1.41077 1.44689 1.52406 1.67443 2.09806 2.15161 2.42637 3.14822 3.14986 3.39003 3.49344 3.69333 3.72986 3.95775 4.09335 4.14284 4.30846 4.38494 4.39599 4.59281 4.62000 4.67671 4.75004 4.78873 4.84132 4.86440 4.89736 5.06586 5.19282 5.27434 5.33733 5.38845 5.58203 5.80154 5.89755 6.06724 6.09057 6.27070 6.38607 6.85132 6.88954 7.39860 8.93881 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.020991 B = 0.002114 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.555185 B =13242.963650 C =14416.500232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.319 6.319 3 C 0.120 3.880 4 C -0.118 4.118 5 C -0.095 4.095 6 C 0.175 3.825 7 N -0.663 5.663 8 C 0.522 3.478 9 O -0.548 6.548 10 C -0.128 4.128 11 C -0.095 4.095 12 C -0.098 4.098 13 C 0.019 3.981 14 C -0.542 4.542 15 H 0.065 0.935 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.967 3.033 19 H -0.265 1.265 20 H -0.285 1.285 21 H -0.266 1.266 22 C -0.049 4.049 23 N 0.039 4.961 24 O -0.164 6.164 25 O -0.179 6.179 26 C -0.080 4.080 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.070 0.930 30 H 0.182 0.818 31 H 0.160 0.840 32 H 0.431 0.569 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.059 0.941 38 H 0.063 0.937 39 H -0.012 1.012 40 H -0.015 1.015 41 H 0.263 0.737 42 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.793 -28.630 -12.908 31.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.073 3.927 4 C -0.137 4.137 5 C -0.115 4.115 6 C 0.076 3.924 7 N -0.314 5.314 8 C 0.313 3.687 9 O -0.425 6.425 10 C -0.167 4.167 11 C -0.133 4.133 12 C -0.135 4.135 13 C -0.018 4.018 14 C -0.580 4.580 15 H 0.083 0.917 16 C -0.204 4.204 17 N -0.577 5.577 18 Si 0.792 3.208 19 H -0.189 1.189 20 H -0.211 1.211 21 H -0.191 1.191 22 C -0.136 4.136 23 N 0.553 4.447 24 O -0.380 6.380 25 O -0.388 6.388 26 C -0.100 4.100 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.088 0.912 30 H 0.199 0.801 31 H 0.178 0.822 32 H 0.275 0.725 33 H 0.139 0.861 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.006 0.994 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.222 -28.747 -12.409 31.476 hybrid contribution 0.705 1.134 0.259 1.360 sum -2.518 -27.613 -12.150 30.273 Atomic orbital electron populations 1.23563 0.75234 1.06548 1.03003 1.86130 1.24202 1.24647 1.88228 1.18533 0.90594 0.85851 0.97740 1.21958 1.03096 0.90128 0.98485 1.21315 0.91077 1.00294 0.98844 1.17650 0.92444 0.83829 0.98481 1.44097 1.28549 1.07296 1.51454 1.21509 0.85506 0.86027 0.75697 1.90690 1.22402 1.83330 1.46055 1.21737 1.00442 0.89561 1.04970 1.21261 0.98458 0.94236 0.99329 1.21458 0.98481 0.93541 1.00057 1.19049 0.94776 0.93933 0.94021 1.21738 1.05419 0.98043 1.32799 0.91685 1.26067 0.95880 1.03277 0.95151 1.70113 1.18591 1.33300 1.35717 0.85466 0.78504 0.78249 0.78621 1.18929 1.21097 1.19071 1.20575 0.78261 0.95524 1.19282 1.43543 1.03638 1.00309 0.97207 1.94543 1.64758 1.25508 1.53141 1.94410 1.73531 1.16574 1.54247 1.20001 0.93343 0.96511 1.00133 0.90642 0.85665 0.91177 0.80059 0.82246 0.72510 0.86108 0.85392 0.92895 0.93574 0.92275 0.91877 0.99400 0.99695 0.92876 0.81059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -3.65 10.50 -93.21 -0.98 -4.63 16 3 C 0.12 1.65 6.69 22.50 0.15 1.80 16 4 C -0.12 -1.46 9.03 22.35 0.20 -1.26 16 5 C -0.09 -1.71 8.69 22.38 0.19 -1.52 16 6 C 0.17 3.61 6.29 38.11 0.24 3.85 16 7 N -0.66 -13.69 4.55 -303.40 -1.38 -15.07 16 8 C 0.52 12.99 7.67 87.66 0.67 13.66 16 9 O -0.55 -17.17 13.44 -3.08 -0.04 -17.21 16 10 C -0.13 -2.95 5.70 29.85 0.17 -2.78 16 11 C -0.09 -3.18 4.50 30.60 0.14 -3.04 16 12 C -0.10 -3.86 5.15 30.60 0.16 -3.71 16 13 C 0.02 1.04 4.97 29.85 0.15 1.19 16 14 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 15 H 0.06 3.51 7.74 -2.91 -0.02 3.49 16 16 C -0.01 -0.38 5.46 84.66 0.46 0.08 16 17 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16 18 Si 0.97 44.64 29.54 68.60 2.03 46.67 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 C -0.05 -1.00 6.86 36.49 0.25 -0.75 16 23 N 0.04 0.91 4.45 -46.20 -0.21 0.70 16 24 O -0.16 -3.97 18.46 18.88 0.35 -3.63 16 25 O -0.18 -4.30 16.02 18.89 0.30 -4.00 16 26 C -0.08 -1.32 9.49 22.35 0.21 -1.11 16 27 H 0.08 0.07 7.66 -2.39 -0.02 0.05 16 28 H 0.13 0.01 8.14 -2.38 -0.02 -0.01 16 29 H 0.07 0.16 7.66 -2.39 -0.02 0.14 16 30 H 0.18 1.04 6.29 -2.91 -0.02 1.02 16 31 H 0.16 3.22 6.24 -2.91 -0.02 3.20 16 32 H 0.43 7.50 6.51 -92.71 -0.60 6.90 16 33 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.88 8.10 -2.39 -0.02 1.86 16 36 H 0.05 1.70 8.10 -2.39 -0.02 1.68 16 37 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H -0.01 -0.73 8.14 -2.38 -0.02 -0.74 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.17 2.48 7.62 -2.91 -0.02 2.45 16 Total: -1.00 -75.13 362.22 5.15 -69.98 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 0.45 Total: 8.67 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 4.34 Total: -23.36 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -1.30 Total: -72.49 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.37 Total: -29.46 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -75.13 5.15 -69.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588825838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.630 kcal (2) G-P(sol) polarization free energy of solvation -75.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds