Wall clock time and date at job start Tue Mar 31 2020 13:09:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47365 * 2 1 4 4 C 1.46500 * 119.99925 * 259.24630 * 3 2 1 5 5 C 1.52999 * 109.47517 * 270.00290 * 4 3 2 6 6 F 1.39901 * 109.46958 * 300.00210 * 5 4 3 7 7 F 1.39901 * 109.47075 * 59.99996 * 5 4 3 8 8 C 1.34768 * 119.99807 * 79.25115 * 3 2 1 9 9 O 1.21676 * 119.99904 * 179.63675 * 8 3 2 10 10 C 1.46891 * 120.00294 * 359.63125 * 8 3 2 11 11 C 1.36115 * 125.43762 * 352.03520 * 10 8 3 12 12 C 1.41695 * 107.75045 * 180.24025 * 11 10 8 13 13 C 1.40025 * 133.35139 * 179.81783 * 12 11 10 14 14 C 1.36584 * 119.83084 * 179.97438 * 13 12 11 15 15 C 1.38848 * 120.59744 * 0.02562 * 14 13 12 16 16 C 1.37844 * 120.63720 * 359.97438 * 15 14 13 17 17 C 1.39082 * 119.81473 * 0.02759 * 16 15 14 18 18 N 1.37843 * 133.16836 * 180.02562 * 17 16 15 19 19 C 1.36891 * 125.61295 * 359.93353 * 18 17 16 20 20 H 1.07998 * 119.99575 * 138.20706 * 19 18 17 21 21 C 1.39008 * 120.00118 * 318.19576 * 19 18 17 22 22 N 1.31345 * 120.00282 * 344.94216 * 21 19 18 23 23 Si 1.86804 * 119.99613 * 164.66188 * 21 19 18 24 24 H 1.48498 * 109.46869 * 185.27397 * 23 21 19 25 25 H 1.48497 * 109.47030 * 305.27304 * 23 21 19 26 26 H 1.48504 * 109.47310 * 65.27285 * 23 21 19 27 27 H 1.09000 * 109.46611 * 310.85206 * 1 2 3 28 28 H 1.09003 * 109.46849 * 70.84414 * 1 2 3 29 29 H 1.09002 * 109.47370 * 190.84587 * 1 2 3 30 30 H 1.09000 * 109.46802 * 239.99979 * 2 1 3 31 31 H 1.09004 * 109.47145 * 120.00287 * 2 1 3 32 32 H 1.09007 * 109.47153 * 30.00568 * 4 3 2 33 33 H 1.08997 * 109.46966 * 149.99749 * 4 3 2 34 34 H 1.08994 * 109.47177 * 180.02562 * 5 4 3 35 35 H 1.08006 * 126.12624 * 0.02562 * 11 10 8 36 36 H 1.08001 * 120.08427 * 359.94707 * 13 12 11 37 37 H 1.07990 * 119.69610 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.68207 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.09500 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00039 * 351.36338 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4858 1.9928 -1.2465 5 6 3.9846 1.7333 -1.4114 6 9 4.6760 2.2907 -0.3304 7 9 4.2173 0.3544 -1.4527 8 6 2.0378 2.0890 1.1467 9 8 2.4497 3.2340 1.1479 10 6 1.5617 1.4784 2.3949 11 6 0.9402 0.2717 2.4963 12 6 0.6396 0.0541 3.8638 13 6 0.0138 -0.9898 4.5561 14 6 -0.1351 -0.9129 5.9116 15 6 0.3284 0.1929 6.6119 16 6 0.9477 1.2329 5.9526 17 6 1.1108 1.1774 4.5725 18 7 1.6748 2.0368 3.6541 19 6 2.2480 3.2462 3.9416 20 1 3.1676 3.5369 3.4556 21 6 1.6464 4.1001 4.8587 22 7 0.4016 3.8979 5.2259 23 14 2.6108 5.5307 5.5749 24 1 1.7942 6.2070 6.6146 25 1 3.8674 5.0252 6.1837 26 1 2.9375 6.4972 4.4957 27 1 -0.3632 0.6722 0.7773 28 1 -0.3633 0.3372 -0.9708 29 1 -0.3634 -1.0093 0.1934 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9470 1.5585 -2.0887 33 1 2.3044 3.0671 -1.2143 34 1 4.3323 2.1888 -2.3385 35 1 0.7133 -0.3983 1.6801 36 1 -0.3506 -1.8534 4.0196 37 1 -0.6178 -1.7194 6.4435 38 1 0.2032 0.2381 7.6837 39 1 1.3045 2.0890 6.5059 40 1 -0.1372 3.2337 4.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612490905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:15 Heat of formation + Delta-G solvation = -46.556514 kcal Electronic energy + Delta-G solvation = -28355.228026 eV Core-core repulsion = 24193.486891 eV Total energy + Delta-G solvation = -4161.741135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -48.78159 -46.78614 -40.84850 -38.95561 -36.16025 -35.80117 -33.80754 -31.97694 -30.32757 -29.21244 -28.93689 -27.71908 -24.60829 -23.89033 -23.32058 -22.00368 -20.80283 -20.24712 -19.10751 -18.02526 -17.59284 -17.14856 -16.44923 -16.10858 -15.93903 -15.57703 -14.87075 -14.68946 -14.29642 -13.97698 -13.89852 -13.72179 -13.57178 -13.15477 -13.06715 -12.96812 -12.56788 -12.44648 -12.32314 -12.17235 -11.93839 -11.65073 -11.37764 -11.26336 -11.05839 -10.91376 -10.78797 -10.47787 -10.31907 -10.09692 -9.78823 -9.22330 -9.03913 -8.73580 -8.50643 -7.44850 -6.95683 -6.64008 -4.42787 1.72122 2.65320 2.96730 3.01045 3.21577 3.24974 3.42029 3.85724 4.00994 4.15643 4.32275 4.41898 4.58353 4.76580 4.84246 4.96594 5.07163 5.20352 5.32755 5.41386 5.56519 5.62889 5.73402 5.81873 5.87453 5.90235 6.08913 6.29692 6.38211 6.44052 6.57840 6.65551 6.80671 6.91256 7.00561 7.36276 7.45651 7.52833 7.59853 7.81678 7.89268 7.95562 8.28291 8.73521 8.90048 9.18696 10.27073 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.005938 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.305893 B = 4714.450948 C = 6502.078699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.092 3.908 3 N -0.612 5.612 4 C 0.073 3.927 5 C 0.243 3.757 6 F -0.193 7.193 7 F -0.208 7.208 8 C 0.588 3.412 9 O -0.516 6.516 10 C -0.023 4.023 11 C -0.235 4.235 12 C -0.124 4.124 13 C -0.089 4.089 14 C -0.155 4.155 15 C -0.144 4.144 16 C -0.070 4.070 17 C 0.053 3.947 18 N -0.239 5.239 19 C -0.401 4.401 20 H 0.107 0.893 21 C 0.021 3.979 22 N -0.837 5.837 23 Si 1.082 2.918 24 H -0.273 1.273 25 H -0.277 1.277 26 H -0.276 1.276 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.164 0.836 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.148 -6.878 -10.825 12.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.030 4.030 3 N -0.347 5.347 4 C -0.052 4.052 5 C 0.188 3.812 6 F -0.174 7.174 7 F -0.190 7.190 8 C 0.379 3.621 9 O -0.390 6.390 10 C -0.140 4.140 11 C -0.261 4.261 12 C -0.128 4.128 13 C -0.108 4.108 14 C -0.174 4.174 15 C -0.165 4.165 16 C -0.089 4.089 17 C -0.061 4.061 18 N 0.100 4.900 19 C -0.530 4.530 20 H 0.125 0.875 21 C -0.192 4.192 22 N -0.465 5.465 23 Si 0.905 3.095 24 H -0.198 1.198 25 H -0.203 1.203 26 H -0.202 1.202 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.181 0.819 36 H 0.123 0.877 37 H 0.123 0.877 38 H 0.126 0.874 39 H 0.138 0.862 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.451 -4.681 -9.607 10.784 hybrid contribution 0.019 -1.318 -1.226 1.800 sum 1.469 -5.999 -10.832 12.470 Atomic orbital electron populations 1.22516 0.95759 1.03055 1.02668 1.22222 0.94438 0.82230 1.04159 1.47513 1.65940 1.14369 1.06878 1.22481 0.91396 1.02723 0.88614 1.22516 0.93765 0.75619 0.89322 1.93066 1.81057 1.84689 1.58596 1.92956 1.95704 1.33225 1.97076 1.17291 0.77471 0.84997 0.82319 1.90800 1.45589 1.17251 1.85396 1.19587 1.10731 0.97733 0.85905 1.21790 1.09557 0.98556 0.96218 1.18037 1.05574 0.95631 0.93606 1.20059 1.00051 0.96945 0.93714 1.20320 1.04339 0.98617 0.94142 1.20569 1.02534 0.94808 0.98574 1.20277 0.99082 0.98307 0.91250 1.18429 1.05434 0.90889 0.91329 1.40078 1.35382 1.12616 1.01892 1.20875 1.09532 0.93099 1.29465 0.87504 1.26889 0.96637 1.01117 0.94577 1.70595 1.06395 1.32186 1.37368 0.83328 0.74974 0.74265 0.76884 1.19752 1.20269 1.20168 0.90176 0.92941 0.91180 0.90531 0.88007 0.87861 0.87038 0.87135 0.81901 0.87691 0.87738 0.87353 0.86233 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.37 37.16 0.31 -1.94 16 2 C 0.09 1.23 5.36 -4.04 -0.02 1.21 16 3 N -0.61 -10.00 2.43 -175.15 -0.43 -10.42 16 4 C 0.07 0.90 5.65 -4.04 -0.02 0.88 16 5 C 0.24 2.99 5.60 37.16 0.21 3.20 16 6 F -0.19 -3.39 16.25 2.25 0.04 -3.35 16 7 F -0.21 -2.76 16.49 2.25 0.04 -2.72 16 8 C 0.59 12.98 7.06 -12.76 -0.09 12.89 16 9 O -0.52 -13.00 14.14 5.21 0.07 -12.92 16 10 C -0.02 -0.54 6.49 -82.25 -0.53 -1.08 16 11 C -0.24 -4.90 7.12 -39.03 -0.28 -5.17 16 12 C -0.12 -2.80 6.16 -106.89 -0.66 -3.46 16 13 C -0.09 -1.73 10.06 -39.51 -0.40 -2.13 16 14 C -0.16 -2.92 9.97 -39.95 -0.40 -3.32 16 15 C -0.14 -2.96 10.02 -39.50 -0.40 -3.36 16 16 C -0.07 -1.67 8.43 -39.41 -0.33 -2.01 16 17 C 0.05 1.35 5.38 -83.83 -0.45 0.90 16 18 N -0.24 -6.41 2.60 -56.08 -0.15 -6.56 16 19 C -0.40 -11.21 8.61 -15.01 -0.13 -11.34 16 20 H 0.11 3.10 7.23 -52.49 -0.38 2.72 16 21 C 0.02 0.56 4.52 -17.47 -0.08 0.48 16 22 N -0.84 -23.43 11.78 55.50 0.65 -22.77 16 23 Si 1.08 23.52 29.95 -169.99 -5.09 18.43 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 27 H 0.08 1.26 5.96 -51.93 -0.31 0.96 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.72 7.98 -51.93 -0.41 0.31 16 30 H 0.08 0.82 7.53 -51.93 -0.39 0.43 16 31 H 0.10 1.53 5.22 -51.93 -0.27 1.26 16 32 H 0.10 0.86 8.07 -51.93 -0.42 0.44 16 33 H 0.11 1.47 7.42 -51.93 -0.39 1.08 16 34 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.16 2.72 2.76 -52.48 -0.14 2.58 16 36 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 39 H 0.12 3.02 6.66 -52.48 -0.35 2.68 16 40 H 0.29 8.40 6.72 -40.82 -0.27 8.12 16 LS Contribution 329.76 15.07 4.97 4.97 Total: -1.00 -33.27 329.76 -7.41 -40.68 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -4.25 Total: 8.91 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: -3.27 Total: -14.24 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.08 Total: -39.76 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.07 Total: -12.92 kcal Atomic # 9 Polarization: -6.14 SS G_CDS: 0.07 Total: -6.07 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -5.09 Total: 18.43 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.27 -7.41 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612490905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.877 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds