Wall clock time and date at job start Tue Mar 31 2020 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46498 * 109.47365 * 2 1 4 4 C 1.46500 * 119.99925 * 259.24630 * 3 2 1 5 5 C 1.52999 * 109.47517 * 270.00290 * 4 3 2 6 6 F 1.39901 * 109.46958 * 300.00210 * 5 4 3 7 7 F 1.39901 * 109.47075 * 59.99996 * 5 4 3 8 8 C 1.34768 * 119.99807 * 79.25115 * 3 2 1 9 9 O 1.21676 * 119.99904 * 179.63675 * 8 3 2 10 10 C 1.46891 * 120.00294 * 359.63125 * 8 3 2 11 11 C 1.36115 * 125.43762 * 352.03520 * 10 8 3 12 12 C 1.41695 * 107.75045 * 180.24025 * 11 10 8 13 13 C 1.40025 * 133.35139 * 179.81783 * 12 11 10 14 14 C 1.36584 * 119.83084 * 179.97438 * 13 12 11 15 15 C 1.38848 * 120.59744 * 0.02562 * 14 13 12 16 16 C 1.37844 * 120.63720 * 359.97438 * 15 14 13 17 17 C 1.39082 * 119.81473 * 0.02759 * 16 15 14 18 18 N 1.37843 * 133.16836 * 180.02562 * 17 16 15 19 19 C 1.36891 * 125.61295 * 359.93353 * 18 17 16 20 20 H 1.07998 * 119.99575 * 138.20706 * 19 18 17 21 21 C 1.39008 * 120.00118 * 318.19576 * 19 18 17 22 22 N 1.31345 * 120.00282 * 344.94216 * 21 19 18 23 23 Si 1.86804 * 119.99613 * 164.66188 * 21 19 18 24 24 H 1.48498 * 109.46869 * 185.27397 * 23 21 19 25 25 H 1.48497 * 109.47030 * 305.27304 * 23 21 19 26 26 H 1.48504 * 109.47310 * 65.27285 * 23 21 19 27 27 H 1.09000 * 109.46611 * 310.85206 * 1 2 3 28 28 H 1.09003 * 109.46849 * 70.84414 * 1 2 3 29 29 H 1.09002 * 109.47370 * 190.84587 * 1 2 3 30 30 H 1.09000 * 109.46802 * 239.99979 * 2 1 3 31 31 H 1.09004 * 109.47145 * 120.00287 * 2 1 3 32 32 H 1.09007 * 109.47153 * 30.00568 * 4 3 2 33 33 H 1.08997 * 109.46966 * 149.99749 * 4 3 2 34 34 H 1.08994 * 109.47177 * 180.02562 * 5 4 3 35 35 H 1.08006 * 126.12624 * 0.02562 * 11 10 8 36 36 H 1.08001 * 120.08427 * 359.94707 * 13 12 11 37 37 H 1.07990 * 119.69610 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.68207 * 180.02562 * 15 14 13 39 39 H 1.08003 * 120.09500 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00039 * 351.36338 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4858 1.9928 -1.2465 5 6 3.9846 1.7333 -1.4114 6 9 4.6760 2.2907 -0.3304 7 9 4.2173 0.3544 -1.4527 8 6 2.0378 2.0890 1.1467 9 8 2.4497 3.2340 1.1479 10 6 1.5617 1.4784 2.3949 11 6 0.9402 0.2717 2.4963 12 6 0.6396 0.0541 3.8638 13 6 0.0138 -0.9898 4.5561 14 6 -0.1351 -0.9129 5.9116 15 6 0.3284 0.1929 6.6119 16 6 0.9477 1.2329 5.9526 17 6 1.1108 1.1774 4.5725 18 7 1.6748 2.0368 3.6541 19 6 2.2480 3.2462 3.9416 20 1 3.1676 3.5369 3.4556 21 6 1.6464 4.1001 4.8587 22 7 0.4016 3.8979 5.2259 23 14 2.6108 5.5307 5.5749 24 1 1.7942 6.2070 6.6146 25 1 3.8674 5.0252 6.1837 26 1 2.9375 6.4972 4.4957 27 1 -0.3632 0.6722 0.7773 28 1 -0.3633 0.3372 -0.9708 29 1 -0.3634 -1.0093 0.1934 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.9470 1.5585 -2.0887 33 1 2.3044 3.0671 -1.2143 34 1 4.3323 2.1888 -2.3385 35 1 0.7133 -0.3983 1.6801 36 1 -0.3506 -1.8534 4.0196 37 1 -0.6178 -1.7194 6.4435 38 1 0.2032 0.2381 7.6837 39 1 1.3045 2.0890 6.5059 40 1 -0.1372 3.2337 4.7683 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612490905.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:14 Heat of formation + Delta-G solvation = -66.709375 kcal Electronic energy + Delta-G solvation = -28356.101920 eV Core-core repulsion = 24193.486891 eV Total energy + Delta-G solvation = -4162.615028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.123 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.85980 -47.90182 -42.55010 -40.50408 -37.75703 -37.38415 -35.60805 -33.26284 -31.99011 -30.79303 -30.41900 -29.22267 -26.52364 -25.32255 -24.39195 -23.44781 -22.48152 -21.92931 -20.66343 -19.71799 -18.66110 -18.32039 -17.74884 -17.60677 -17.51649 -17.13913 -16.37519 -16.30658 -15.91062 -15.52881 -15.47263 -15.15393 -14.85410 -14.74961 -14.59330 -14.28294 -14.09637 -13.79570 -13.74827 -13.42952 -13.24997 -12.91658 -12.77520 -12.69007 -12.45012 -12.33899 -12.17814 -12.11391 -12.03551 -11.82570 -11.44975 -10.95070 -10.88542 -10.48120 -9.83831 -9.37466 -8.78681 -8.44058 -6.49037 0.03611 0.97965 1.30213 1.38856 1.49423 1.66439 1.71258 2.24047 2.41045 2.77811 2.93551 2.99207 3.21850 3.38928 3.49385 3.76808 3.85633 4.05228 4.13098 4.28501 4.33258 4.39442 4.42415 4.55950 4.57724 4.61603 4.73188 4.83600 4.89843 4.97498 5.08432 5.23336 5.33079 5.37652 5.45613 5.55936 5.75229 5.78516 5.84615 6.04934 6.12849 6.31128 6.48918 6.92036 7.16241 7.30315 8.19276 Molecular weight = 322.12amu Principal moments of inertia in cm(-1) A = 0.011721 B = 0.005938 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.305893 B = 4714.450948 C = 6502.078699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.085 3.915 3 N -0.601 5.601 4 C 0.065 3.935 5 C 0.234 3.766 6 F -0.230 7.230 7 F -0.212 7.212 8 C 0.579 3.421 9 O -0.564 6.564 10 C -0.056 4.056 11 C -0.199 4.199 12 C -0.151 4.151 13 C -0.076 4.076 14 C -0.155 4.155 15 C -0.124 4.124 16 C -0.117 4.117 17 C 0.033 3.967 18 N -0.282 5.282 19 C -0.426 4.426 20 H 0.077 0.923 21 C -0.016 4.016 22 N -0.859 5.859 23 Si 1.125 2.875 24 H -0.263 1.263 25 H -0.264 1.264 26 H -0.270 1.270 27 H 0.040 0.960 28 H 0.076 0.924 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.167 0.833 35 H 0.209 0.791 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.090 0.910 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.060 -10.392 -12.697 16.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 N -0.334 5.334 4 C -0.058 4.058 5 C 0.180 3.820 6 F -0.212 7.212 7 F -0.193 7.193 8 C 0.370 3.630 9 O -0.443 6.443 10 C -0.171 4.171 11 C -0.225 4.225 12 C -0.156 4.156 13 C -0.095 4.095 14 C -0.174 4.174 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.081 4.081 18 N 0.055 4.945 19 C -0.554 4.554 20 H 0.095 0.905 21 C -0.222 4.222 22 N -0.488 5.488 23 Si 0.942 3.058 24 H -0.188 1.188 25 H -0.189 1.189 26 H -0.196 1.196 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.184 0.816 35 H 0.225 0.775 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.154 0.846 39 H 0.109 0.891 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.247 -8.245 -11.533 14.179 hybrid contribution 0.317 -0.553 -0.794 1.018 sum 0.564 -8.799 -12.327 15.155 Atomic orbital electron populations 1.22458 0.94480 1.03929 1.02791 1.22445 0.95403 0.80476 1.05296 1.47573 1.64363 1.15096 1.06380 1.22918 0.92278 1.02471 0.88163 1.23107 0.93289 0.75471 0.90116 1.93002 1.81915 1.85358 1.60879 1.92940 1.95690 1.33626 1.97066 1.17405 0.77303 0.84804 0.83537 1.90757 1.47945 1.19320 1.86294 1.20347 1.11665 0.98750 0.86324 1.22440 1.05926 0.97284 0.96860 1.18602 1.06666 0.96050 0.94264 1.20593 0.97728 0.96868 0.94266 1.20833 1.03459 0.98878 0.94196 1.21035 0.99491 0.93798 1.00086 1.20293 1.02840 0.99391 0.91235 1.19004 1.05033 0.91848 0.92175 1.40216 1.38089 1.12998 1.03213 1.20632 1.09338 0.94713 1.30722 0.90525 1.28181 0.96731 1.02648 0.94688 1.70710 1.06916 1.32559 1.38645 0.82843 0.74437 0.71834 0.76643 1.18751 1.18907 1.19564 0.94063 0.90520 0.88167 0.86420 0.89767 0.82455 0.88295 0.81602 0.77456 0.83075 0.82929 0.84632 0.89138 0.92412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 8.37 71.98 0.60 -3.11 16 2 C 0.08 1.99 5.36 86.38 0.46 2.45 16 3 N -0.60 -18.99 2.43 -826.28 -2.01 -20.99 16 4 C 0.06 1.46 5.65 86.38 0.49 1.95 16 5 C 0.23 5.27 5.60 71.98 0.40 5.68 16 6 F -0.23 -8.24 16.25 44.97 0.73 -7.51 16 7 F -0.21 -5.00 16.49 44.97 0.74 -4.26 16 8 C 0.58 26.66 7.06 86.51 0.61 27.27 16 9 O -0.56 -30.54 14.14 -4.27 -0.06 -30.60 16 10 C -0.06 -2.81 6.49 39.91 0.26 -2.55 16 11 C -0.20 -8.20 7.12 22.63 0.16 -8.04 16 12 C -0.15 -6.73 6.16 -21.33 -0.13 -6.86 16 13 C -0.08 -2.69 10.06 22.32 0.22 -2.46 16 14 C -0.15 -5.23 9.97 22.03 0.22 -5.01 16 15 C -0.12 -4.94 10.02 22.32 0.22 -4.72 16 16 C -0.12 -5.90 8.43 22.38 0.19 -5.71 16 17 C 0.03 1.76 5.38 39.06 0.21 1.97 16 18 N -0.28 -16.21 2.60 -331.35 -0.86 -17.07 16 19 C -0.43 -26.03 8.61 84.09 0.72 -25.30 16 20 H 0.08 4.94 7.23 -2.91 -0.02 4.92 16 21 C -0.02 -0.93 4.52 84.95 0.38 -0.55 16 22 N -0.86 -51.65 11.78 21.67 0.26 -51.40 16 23 Si 1.13 50.80 29.95 68.60 2.05 52.86 16 24 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H 0.04 1.21 5.96 -2.39 -0.01 1.20 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.10 1.52 7.98 -2.39 -0.02 1.50 16 30 H 0.12 1.89 7.53 -2.39 -0.02 1.87 16 31 H 0.08 2.29 5.22 -2.39 -0.01 2.28 16 32 H 0.16 1.83 8.07 -2.38 -0.02 1.81 16 33 H 0.10 2.56 7.42 -2.39 -0.02 2.54 16 34 H 0.17 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.21 6.36 2.76 -2.91 -0.01 6.35 16 36 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 37 H 0.15 3.76 8.06 -2.92 -0.02 3.74 16 38 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.09 4.97 6.66 -2.91 -0.02 4.95 16 40 H 0.27 16.81 6.72 -92.71 -0.62 16.18 16 Total: -1.00 -84.33 329.76 7.12 -77.20 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 1.24 Total: 26.77 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 5.03 Total: -25.00 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -2.61 Total: -89.46 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.06 Total: -30.60 kcal Atomic # 9 Polarization: -13.24 SS G_CDS: 1.47 Total: -11.77 kcal Atomic # 14 Polarization: 50.80 SS G_CDS: 2.05 Total: 52.86 kcal Total: -84.33 7.12 -77.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612490905.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.494 kcal (2) G-P(sol) polarization free energy of solvation -84.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds