Wall clock time and date at job start Tue Mar 31 2020 12:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46966 * 120.00252 * 2 1 3 5 5 C 1.50697 * 109.46950 * 184.99775 * 4 2 1 6 6 O 1.20828 * 119.99869 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.46847 * 240.00054 * 2 1 3 9 9 C 1.34774 * 119.99862 * 85.00426 * 8 2 1 10 10 O 1.21586 * 120.00017 * 359.97438 * 9 8 2 11 11 N 1.34774 * 119.99877 * 180.02562 * 9 8 2 12 12 C 1.46499 * 119.99922 * 179.72216 * 11 9 8 13 13 C 1.50702 * 109.47074 * 180.27298 * 12 11 9 14 14 C 1.38325 * 119.96491 * 269.72403 * 13 12 11 15 15 C 1.38283 * 120.13698 * 179.76955 * 14 13 12 16 16 C 1.38129 * 120.06595 * 0.50920 * 15 14 13 17 17 C 1.38851 * 119.93121 * 359.74214 * 16 15 14 18 18 O 1.35749 * 120.06741 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00296 * 354.50117 * 18 17 16 20 20 H 1.08003 * 120.00182 * 5.04631 * 19 18 17 21 21 C 1.38655 * 120.00529 * 185.05233 * 19 18 17 22 22 N 1.31555 * 120.00301 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99735 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47457 * 89.99992 * 23 21 19 25 25 H 1.48498 * 109.47387 * 210.00156 * 23 21 19 26 26 H 1.48501 * 109.47379 * 330.00236 * 23 21 19 27 27 C 1.38076 * 119.96443 * 90.00280 * 13 12 11 28 28 H 1.09003 * 109.46982 * 300.00162 * 1 2 3 29 29 H 1.09003 * 109.46686 * 59.99753 * 1 2 3 30 30 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46944 * 304.99762 * 4 2 1 32 32 H 1.08999 * 109.46817 * 64.99848 * 4 2 1 33 33 H 0.96696 * 116.99825 * 179.97438 * 7 5 4 34 34 H 0.96995 * 119.99736 * 264.99886 * 8 2 1 35 35 H 0.96995 * 120.00312 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47639 * 300.27251 * 12 11 9 37 37 H 1.09005 * 109.47077 * 60.27569 * 12 11 9 38 38 H 1.07993 * 119.93149 * 359.97438 * 14 13 12 39 39 H 1.07992 * 119.96593 * 180.25688 * 15 14 13 40 40 H 1.08001 * 120.03047 * 179.76826 * 16 15 14 41 41 H 0.96998 * 119.99808 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.03761 * 359.95513 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1428 -0.0235 0.4473 7 8 4.2122 -1.1784 2.3301 8 7 2.0183 -0.6906 -1.1962 9 6 2.1471 -0.0182 -2.3571 10 8 1.8576 1.1614 -2.4118 11 7 2.5958 -0.6537 -3.4577 12 6 2.7300 0.0757 -4.7211 13 6 3.2407 -0.8578 -5.7883 14 6 4.6018 -0.9924 -5.9948 15 6 5.0745 -1.8516 -6.9698 16 6 4.1878 -2.5702 -7.7478 17 6 2.8208 -2.4334 -7.5464 18 8 1.9470 -3.1379 -8.3098 19 6 2.4649 -3.8651 -9.3201 20 1 3.5358 -3.9342 -9.4421 21 6 1.6228 -4.5242 -10.2027 22 7 2.1282 -5.2333 -11.1888 23 14 -0.2294 -4.4053 -9.9916 24 1 -0.7416 -3.2424 -10.7601 25 1 -0.8658 -5.6495 -10.4936 26 1 -0.5534 -4.2293 -8.5531 27 6 2.3493 -1.5735 -6.5627 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2055 33 1 5.1746 -1.0840 2.3274 34 1 2.2490 -1.6317 -1.1526 35 1 2.8264 -1.5948 -3.4142 36 1 1.7582 0.4700 -5.0181 37 1 3.4323 0.8993 -4.5924 38 1 5.2968 -0.4279 -5.3911 39 1 6.1378 -1.9576 -7.1259 40 1 4.5575 -3.2383 -8.5117 41 1 1.5391 -5.6947 -11.8060 42 1 1.2866 -1.4651 -6.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609885971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:06 Heat of formation + Delta-G solvation = -126.672058 kcal Electronic energy + Delta-G solvation = -26110.712283 eV Core-core repulsion = 22056.584593 eV Total energy + Delta-G solvation = -4054.127690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82533 -39.90050 -39.21463 -37.19656 -36.68470 -35.89198 -34.39441 -32.44747 -32.06337 -30.43858 -29.35006 -28.77458 -25.89485 -25.06257 -23.19737 -21.84656 -21.33110 -20.73617 -20.65620 -18.66028 -18.42269 -17.74700 -17.22760 -16.89173 -16.76964 -15.97029 -15.49461 -15.26651 -14.86976 -14.72319 -14.43551 -14.06468 -13.89740 -13.80004 -13.43796 -13.24404 -12.92533 -12.88561 -12.61423 -12.53305 -12.27690 -12.16156 -11.98308 -11.87155 -11.44985 -11.39878 -10.92257 -10.91790 -10.87336 -10.75016 -10.21642 -10.14825 -9.45906 -9.31181 -8.92876 -8.79135 -8.32645 -7.47179 -6.46248 -4.13570 1.79527 1.83258 2.16326 2.58905 2.79764 3.18971 3.23258 3.30697 3.36921 4.10084 4.19312 4.19700 4.49689 4.57818 4.68444 4.71420 4.97942 5.03972 5.05587 5.13688 5.16222 5.37775 5.45450 5.65921 5.70067 5.78333 5.89887 5.93666 6.02327 6.11913 6.16365 6.37900 6.43960 6.56714 6.69234 6.89937 7.02383 7.13941 7.21613 7.50408 7.50739 7.73561 7.97807 8.04352 8.66386 8.88779 9.50090 10.61256 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.002408 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.631290 B =11624.136765 C =12229.997515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.172 3.828 3 H 0.098 0.902 4 C -0.123 4.123 5 C 0.470 3.530 6 O -0.496 6.496 7 O -0.522 6.522 8 N -0.740 5.740 9 C 0.711 3.289 10 O -0.594 6.594 11 N -0.737 5.737 12 C 0.187 3.813 13 C -0.074 4.074 14 C -0.184 4.184 15 C -0.078 4.078 16 C -0.212 4.212 17 C 0.156 3.844 18 O -0.216 6.216 19 C -0.391 4.391 20 H 0.107 0.893 21 C 0.064 3.936 22 N -0.878 5.878 23 Si 0.906 3.094 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.260 1.260 27 C -0.170 4.170 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.112 0.888 33 H 0.411 0.589 34 H 0.392 0.608 35 H 0.397 0.603 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.280 0.720 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.565 6.428 25.518 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.066 3.934 3 H 0.116 0.884 4 C -0.162 4.162 5 C 0.311 3.689 6 O -0.383 6.383 7 O -0.334 6.334 8 N -0.395 5.395 9 C 0.411 3.589 10 O -0.472 6.472 11 N -0.392 5.392 12 C 0.064 3.936 13 C -0.075 4.075 14 C -0.204 4.204 15 C -0.096 4.096 16 C -0.232 4.232 17 C 0.104 3.896 18 O -0.121 6.121 19 C -0.466 4.466 20 H 0.124 0.876 21 C -0.140 4.140 22 N -0.516 5.516 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.190 4.190 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.130 0.870 33 H 0.270 0.730 34 H 0.226 0.774 35 H 0.231 0.769 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.151 0.849 41 H 0.090 0.910 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.264 7.506 25.008 26.112 hybrid contribution 0.345 -1.062 -0.142 1.125 sum 0.081 6.444 24.866 25.688 Atomic orbital electron populations 1.22215 0.94243 1.02561 1.03274 1.20560 0.93861 0.97696 0.81251 0.88393 1.21782 0.87966 1.05087 1.01316 1.23451 0.91729 0.75252 0.78467 1.90829 1.70220 1.38975 1.38228 1.84519 1.27278 1.72881 1.48767 1.45020 1.72338 1.13235 1.08956 1.15813 0.78001 0.84928 0.80124 1.90899 1.57385 1.14302 1.84651 1.45214 1.70961 1.14083 1.08936 1.19977 1.01155 0.92602 0.79860 1.19296 0.93375 0.98018 0.96800 1.20576 0.94197 1.03590 1.02026 1.20809 0.98640 0.95404 0.94790 1.21363 0.92882 1.04945 1.03998 1.19058 0.89053 0.90428 0.91097 1.83573 1.34193 1.54379 1.39993 1.20760 0.95127 1.26722 1.04026 0.87612 1.24468 1.00302 0.95136 0.94051 1.69643 1.36622 1.30474 1.14867 0.86179 0.83169 0.77738 0.79799 1.19827 1.20769 1.18378 1.20087 0.99316 1.00492 0.99103 0.91420 0.91040 0.92152 0.86024 0.87024 0.73006 0.77424 0.76883 0.91067 0.91075 0.87262 0.87002 0.84858 0.90991 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 37.16 0.35 -0.80 16 2 C 0.17 1.41 2.14 -67.92 -0.15 1.27 16 3 H 0.10 1.08 7.39 -51.93 -0.38 0.70 16 4 C -0.12 -0.60 5.35 -27.88 -0.15 -0.75 16 5 C 0.47 3.53 8.19 36.00 0.29 3.82 16 6 O -0.50 -5.88 16.11 -18.75 -0.30 -6.18 16 7 O -0.52 -2.83 13.42 -39.25 -0.53 -3.36 16 8 N -0.74 -7.37 4.22 -58.67 -0.25 -7.62 16 9 C 0.71 9.97 8.53 -86.92 -0.74 9.23 16 10 O -0.59 -10.56 16.01 5.29 0.08 -10.48 16 11 N -0.74 -9.75 5.55 -66.41 -0.37 -10.12 16 12 C 0.19 2.75 5.80 -5.19 -0.03 2.72 16 13 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 14 C -0.18 -2.97 9.70 -39.53 -0.38 -3.36 16 15 C -0.08 -1.36 10.04 -39.60 -0.40 -1.75 16 16 C -0.21 -4.41 9.17 -39.39 -0.36 -4.77 16 17 C 0.16 3.47 6.65 -39.11 -0.26 3.21 16 18 O -0.22 -5.57 8.59 0.06 0.00 -5.57 16 19 C -0.39 -10.80 9.95 30.89 0.31 -10.49 16 20 H 0.11 2.98 5.44 -52.48 -0.29 2.69 16 21 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 22 N -0.88 -25.04 13.96 55.48 0.77 -24.27 16 23 Si 0.91 21.39 28.62 -169.99 -4.86 16.52 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.26 -6.14 7.11 56.52 0.40 -5.73 16 27 C -0.17 -3.23 9.65 -39.39 -0.38 -3.61 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.41 0.88 9.10 45.56 0.41 1.29 16 34 H 0.39 2.99 8.62 -40.82 -0.35 2.64 16 35 H 0.40 4.61 8.48 -40.82 -0.35 4.27 16 36 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.07 1.05 8.08 -51.93 -0.42 0.63 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.13 2.92 5.64 -52.49 -0.30 2.62 16 41 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.12 2.15 8.06 -52.49 -0.42 1.72 16 LS Contribution 367.20 15.07 5.53 5.53 Total: -1.00 -35.05 367.20 -7.06 -42.11 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.60 Total: 8.80 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -2.54 Total: -5.37 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.16 Total: -42.01 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.74 Total: -25.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.86 Total: 16.52 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.05 -7.06 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609885971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.565 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds