Wall clock time and date at job start Tue Mar 31 2020 12:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47284 * 2 1 4 4 C 1.53003 * 109.46966 * 120.00252 * 2 1 3 5 5 C 1.50697 * 109.46950 * 184.99775 * 4 2 1 6 6 O 1.20828 * 119.99869 * 359.97438 * 5 4 2 7 7 O 1.34228 * 119.99975 * 180.02562 * 5 4 2 8 8 N 1.46504 * 109.46847 * 240.00054 * 2 1 3 9 9 C 1.34774 * 119.99862 * 85.00426 * 8 2 1 10 10 O 1.21586 * 120.00017 * 359.97438 * 9 8 2 11 11 N 1.34774 * 119.99877 * 180.02562 * 9 8 2 12 12 C 1.46499 * 119.99922 * 179.72216 * 11 9 8 13 13 C 1.50702 * 109.47074 * 180.27298 * 12 11 9 14 14 C 1.38325 * 119.96491 * 269.72403 * 13 12 11 15 15 C 1.38283 * 120.13698 * 179.76955 * 14 13 12 16 16 C 1.38129 * 120.06595 * 0.50920 * 15 14 13 17 17 C 1.38851 * 119.93121 * 359.74214 * 16 15 14 18 18 O 1.35749 * 120.06741 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00296 * 354.50117 * 18 17 16 20 20 H 1.08003 * 120.00182 * 5.04631 * 19 18 17 21 21 C 1.38655 * 120.00529 * 185.05233 * 19 18 17 22 22 N 1.31555 * 120.00301 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99735 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47457 * 89.99992 * 23 21 19 25 25 H 1.48498 * 109.47387 * 210.00156 * 23 21 19 26 26 H 1.48501 * 109.47379 * 330.00236 * 23 21 19 27 27 C 1.38076 * 119.96443 * 90.00280 * 13 12 11 28 28 H 1.09003 * 109.46982 * 300.00162 * 1 2 3 29 29 H 1.09003 * 109.46686 * 59.99753 * 1 2 3 30 30 H 1.08997 * 109.47284 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46944 * 304.99762 * 4 2 1 32 32 H 1.08999 * 109.46817 * 64.99848 * 4 2 1 33 33 H 0.96696 * 116.99825 * 179.97438 * 7 5 4 34 34 H 0.96995 * 119.99736 * 264.99886 * 8 2 1 35 35 H 0.96995 * 120.00312 * 359.97438 * 11 9 8 36 36 H 1.09000 * 109.47639 * 300.27251 * 12 11 9 37 37 H 1.09005 * 109.47077 * 60.27569 * 12 11 9 38 38 H 1.07993 * 119.93149 * 359.97438 * 14 13 12 39 39 H 1.07992 * 119.96593 * 180.25688 * 15 14 13 40 40 H 1.08001 * 120.03047 * 179.76826 * 16 15 14 41 41 H 0.96998 * 119.99808 * 179.97438 * 22 21 19 42 42 H 1.08000 * 120.03761 * 359.95513 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6150 1.3127 6 8 4.1428 -0.0235 0.4473 7 8 4.2122 -1.1784 2.3301 8 7 2.0183 -0.6906 -1.1962 9 6 2.1471 -0.0182 -2.3571 10 8 1.8576 1.1614 -2.4118 11 7 2.5958 -0.6537 -3.4577 12 6 2.7300 0.0757 -4.7211 13 6 3.2407 -0.8578 -5.7883 14 6 4.6018 -0.9924 -5.9948 15 6 5.0745 -1.8516 -6.9698 16 6 4.1878 -2.5702 -7.7478 17 6 2.8208 -2.4334 -7.5464 18 8 1.9470 -3.1379 -8.3098 19 6 2.4649 -3.8651 -9.3201 20 1 3.5358 -3.9342 -9.4421 21 6 1.6228 -4.5242 -10.2027 22 7 2.1282 -5.2333 -11.1888 23 14 -0.2294 -4.4053 -9.9916 24 1 -0.7416 -3.2424 -10.7601 25 1 -0.8658 -5.6495 -10.4936 26 1 -0.5534 -4.2293 -8.5531 27 6 2.3493 -1.5735 -6.5627 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6054 -0.2618 2.1370 32 1 1.7516 -1.7716 1.2055 33 1 5.1746 -1.0840 2.3274 34 1 2.2490 -1.6317 -1.1526 35 1 2.8264 -1.5948 -3.4142 36 1 1.7582 0.4700 -5.0181 37 1 3.4323 0.8993 -4.5924 38 1 5.2968 -0.4279 -5.3911 39 1 6.1378 -1.9576 -7.1259 40 1 4.5575 -3.2383 -8.5117 41 1 1.5391 -5.6947 -11.8060 42 1 1.2866 -1.4651 -6.4036 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609885971.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:05 Heat of formation + Delta-G solvation = -153.167180 kcal Electronic energy + Delta-G solvation = -26111.861197 eV Core-core repulsion = 22056.584593 eV Total energy + Delta-G solvation = -4055.276604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53398 -41.05273 -40.62946 -38.67439 -37.43623 -36.64487 -35.65109 -34.45935 -33.04689 -31.68650 -30.88949 -29.31717 -27.46406 -26.73749 -23.88170 -23.33167 -22.40374 -22.03500 -21.48896 -19.90520 -19.50947 -18.97277 -18.72800 -17.66189 -17.44421 -16.91571 -16.80733 -16.70053 -16.25303 -15.88522 -15.67680 -15.55677 -15.45668 -14.85854 -14.59729 -14.46739 -14.22607 -13.87426 -13.83315 -13.54962 -13.29661 -13.18390 -13.10287 -12.84912 -12.59135 -12.47714 -12.45577 -12.38019 -12.00454 -11.94331 -11.55052 -11.37686 -11.30453 -10.92149 -10.35269 -9.82062 -9.76284 -9.13904 -8.50530 -6.23412 0.32430 0.63128 1.29268 1.31639 1.35242 1.51523 1.82255 2.16986 2.23470 2.27384 2.74702 2.97077 3.10456 3.42113 3.58470 3.75983 4.05107 4.12402 4.24253 4.27064 4.40938 4.48638 4.52629 4.62313 4.63686 4.69543 4.70712 4.86447 4.91814 5.05952 5.17815 5.35326 5.36346 5.46381 5.60723 5.62129 5.67848 5.69822 5.73749 5.87859 6.00201 6.18072 6.83902 7.04675 7.09995 7.57431 7.62414 8.60899 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017522 B = 0.002408 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.631290 B =11624.136765 C =12229.997515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.168 3.832 3 H 0.065 0.935 4 C -0.114 4.114 5 C 0.474 3.526 6 O -0.548 6.548 7 O -0.516 6.516 8 N -0.727 5.727 9 C 0.706 3.294 10 O -0.636 6.636 11 N -0.732 5.732 12 C 0.195 3.805 13 C -0.059 4.059 14 C -0.160 4.160 15 C -0.073 4.073 16 C -0.227 4.227 17 C 0.121 3.879 18 O -0.244 6.244 19 C -0.399 4.399 20 H 0.083 0.917 21 C 0.011 3.989 22 N -0.922 5.922 23 Si 0.969 3.031 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.262 1.262 27 C -0.167 4.167 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.154 0.846 32 H 0.142 0.858 33 H 0.425 0.575 34 H 0.406 0.594 35 H 0.407 0.593 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.144 0.856 40 H 0.111 0.889 41 H 0.285 0.715 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.286 6.904 28.902 29.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.062 3.938 3 H 0.083 0.917 4 C -0.151 4.151 5 C 0.317 3.683 6 O -0.439 6.439 7 O -0.329 6.329 8 N -0.382 5.382 9 C 0.406 3.594 10 O -0.517 6.517 11 N -0.388 5.388 12 C 0.071 3.929 13 C -0.060 4.060 14 C -0.179 4.179 15 C -0.091 4.091 16 C -0.247 4.247 17 C 0.072 3.928 18 O -0.151 6.151 19 C -0.475 4.475 20 H 0.101 0.899 21 C -0.188 4.188 22 N -0.563 5.563 23 Si 0.791 3.209 24 H -0.193 1.193 25 H -0.192 1.192 26 H -0.186 1.186 27 C -0.186 4.186 28 H 0.110 0.890 29 H 0.056 0.944 30 H 0.096 0.904 31 H 0.171 0.829 32 H 0.160 0.840 33 H 0.286 0.714 34 H 0.242 0.758 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.162 0.838 39 H 0.161 0.839 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.509 7.951 28.473 29.567 hybrid contribution 0.661 -1.029 -0.899 1.518 sum 0.153 6.922 27.574 28.430 Atomic orbital electron populations 1.22150 0.93063 1.03540 1.02831 1.20674 0.94709 0.96461 0.81921 0.91713 1.21826 0.86164 1.06658 1.00478 1.23926 0.92692 0.73911 0.77739 1.90821 1.71406 1.41390 1.40235 1.84494 1.28614 1.72077 1.47736 1.44989 1.71165 1.13797 1.08258 1.16011 0.77797 0.84560 0.81027 1.90871 1.59201 1.16268 1.85406 1.45040 1.70969 1.14409 1.08368 1.19831 1.01036 0.92203 0.79875 1.19449 0.93298 0.96976 0.96277 1.21011 0.94544 1.01750 1.00582 1.21125 0.99758 0.94349 0.93895 1.21398 0.93111 1.05628 1.04527 1.19547 0.89600 0.91692 0.91995 1.83519 1.34915 1.56077 1.40636 1.20707 0.94407 1.27334 1.05036 0.89908 1.25254 1.04695 0.94988 0.93821 1.69724 1.38186 1.32220 1.16174 0.85242 0.77898 0.78301 0.79434 1.19305 1.19225 1.18630 1.20256 1.00261 0.99802 0.98326 0.88979 0.94403 0.90373 0.82864 0.84037 0.71417 0.75848 0.75784 0.91518 0.90548 0.83827 0.83866 0.87070 0.90570 0.85800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 9.48 71.98 0.68 -1.18 16 2 C 0.17 2.44 2.14 44.99 0.10 2.54 16 3 H 0.06 1.41 7.39 -2.39 -0.02 1.40 16 4 C -0.11 -0.71 5.35 29.85 0.16 -0.55 16 5 C 0.47 6.00 8.19 71.23 0.58 6.58 16 6 O -0.55 -12.40 16.11 21.96 0.35 -12.05 16 7 O -0.52 -4.15 13.42 -51.40 -0.69 -4.84 16 8 N -0.73 -13.22 4.22 -457.80 -1.93 -15.16 16 9 C 0.71 19.00 8.53 179.06 1.53 20.53 16 10 O -0.64 -22.51 16.01 -3.99 -0.06 -22.57 16 11 N -0.73 -17.96 5.55 -482.30 -2.68 -20.63 16 12 C 0.19 5.29 5.80 85.63 0.50 5.79 16 13 C -0.06 -1.80 5.25 -19.88 -0.10 -1.90 16 14 C -0.16 -4.59 9.70 22.30 0.22 -4.38 16 15 C -0.07 -2.38 10.04 22.25 0.22 -2.16 16 16 C -0.23 -9.55 9.17 22.39 0.21 -9.34 16 17 C 0.12 5.45 6.65 22.58 0.15 5.61 16 18 O -0.24 -12.97 8.59 -22.69 -0.19 -13.16 16 19 C -0.40 -23.08 9.95 67.92 0.68 -22.41 16 20 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 21 C 0.01 0.63 5.49 84.83 0.47 1.09 16 22 N -0.92 -54.57 13.96 21.61 0.30 -54.27 16 23 Si 0.97 45.03 28.62 68.60 1.96 46.99 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 27 C -0.17 -6.19 9.65 22.39 0.22 -5.98 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.71 8.14 -2.39 -0.02 0.70 16 30 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.14 0.13 8.14 -2.39 -0.02 0.11 16 33 H 0.42 0.86 9.10 -74.06 -0.67 0.19 16 34 H 0.41 5.14 8.62 -92.71 -0.80 4.34 16 35 H 0.41 8.44 8.48 -92.71 -0.79 7.65 16 36 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 37 H 0.08 2.06 8.08 -2.38 -0.02 2.04 16 38 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 39 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 40 H 0.11 5.15 5.64 -2.91 -0.02 5.14 16 41 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -80.78 367.20 1.49 -79.29 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: -1.16 Total: 22.16 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: 5.59 Total: -5.75 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -4.31 Total: -90.06 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.59 Total: -52.62 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.96 Total: 46.99 kcal Total: -80.78 1.49 -79.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609885971.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.873 kcal (2) G-P(sol) polarization free energy of solvation -80.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds