Wall clock time and date at job start Tue Mar 31 2020 13:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99772 * 3 2 1 5 5 H 1.48500 * 109.47255 * 29.99677 * 3 2 1 6 6 H 1.48497 * 109.46750 * 149.99878 * 3 2 1 7 7 C 1.39902 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00114 * 191.35066 * 7 2 1 9 9 C 1.41153 * 120.00086 * 11.34822 * 7 2 1 10 10 C 1.40866 * 120.16702 * 208.29088 * 9 7 2 11 11 C 1.36371 * 119.83111 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16603 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83212 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99700 * 35.44676 * 13 12 11 15 15 O 1.21279 * 119.99912 * 4.89181 * 14 13 12 16 16 C 1.50696 * 119.99676 * 184.89487 * 14 13 12 17 17 N 1.46907 * 109.46802 * 181.80113 * 16 14 13 18 18 C 1.47897 * 111.00046 * 76.39312 * 17 16 14 19 19 C 1.54602 * 102.63101 * 94.65901 * 18 17 16 20 20 C 1.51574 * 102.81879 * 25.60607 * 19 18 17 21 21 C 1.37912 * 131.57460 * 163.76493 * 20 19 18 22 22 C 1.38305 * 120.08409 * 180.28614 * 21 20 19 23 23 C 1.38315 * 119.88072 * 0.03602 * 22 21 20 24 24 C 1.37907 * 120.26167 * 359.85104 * 23 22 21 25 25 C 1.38969 * 107.94193 * 343.81110 * 20 19 18 26 26 C 1.39476 * 120.33397 * 0.25371 * 12 11 10 27 27 C 1.36377 * 120.17020 * 359.48158 * 26 12 11 28 28 H 0.97002 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08298 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.91999 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00066 * 215.43592 * 13 12 11 32 32 H 1.09000 * 109.47068 * 61.80432 * 16 14 13 33 33 H 1.08999 * 109.47276 * 301.79641 * 16 14 13 34 34 H 1.09004 * 110.77770 * 212.94814 * 18 17 16 35 35 H 1.09007 * 110.77754 * 336.18299 * 18 17 16 36 36 H 1.09003 * 110.74499 * 143.93647 * 19 18 17 37 37 H 1.09000 * 110.74399 * 267.27686 * 19 18 17 38 38 H 1.07999 * 119.95972 * 0.29913 * 21 20 19 39 39 H 1.07995 * 120.06445 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.86433 * 179.87527 * 23 22 21 41 41 H 1.08005 * 119.89623 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.91354 * 179.74875 * 26 12 11 43 43 H 1.07995 * 120.08387 * 180.26206 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5401 1.4402 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0723 -1.2206 0.1846 9 6 1.3233 -2.4222 -0.2395 10 6 1.8010 -3.6272 0.3119 11 6 1.1341 -4.7929 0.0752 12 6 -0.0180 -4.7941 -0.7110 13 7 -0.6932 -5.9885 -0.9487 14 6 -0.7561 -6.9300 0.0137 15 8 -0.3023 -6.7025 1.1151 16 6 -1.3901 -8.2654 -0.2790 17 7 -1.3731 -9.0922 0.9352 18 6 -2.4187 -8.6580 1.8868 19 6 -3.5970 -9.5996 1.5472 20 6 -2.9009 -10.8099 0.9572 21 6 -3.3402 -12.0970 0.7283 22 6 -2.4865 -13.0323 0.1722 23 6 -1.1906 -12.6748 -0.1535 24 6 -0.7472 -11.3884 0.0712 25 6 -1.6026 -10.4391 0.6284 26 6 -0.4939 -3.6059 -1.2651 27 6 0.1592 -2.4315 -1.0328 28 1 -0.4851 0.8400 -0.0004 29 1 2.6933 -3.6278 0.9205 30 1 1.4994 -5.7176 0.4968 31 1 -1.1183 -6.1429 -1.8067 32 1 -0.8312 -8.7678 -1.0685 33 1 -2.4203 -8.1155 -0.6020 34 1 -2.0903 -8.8051 2.9157 35 1 -2.6901 -7.6164 1.7143 36 1 -4.1462 -9.8714 2.4486 37 1 -4.2596 -9.1398 0.8139 38 1 -4.3521 -12.3750 0.9834 39 1 -2.8306 -14.0402 -0.0065 40 1 -0.5236 -13.4059 -0.5859 41 1 0.2657 -11.1156 -0.1857 42 1 -1.3844 -3.6153 -1.8762 43 1 -0.2129 -1.5116 -1.4591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007905300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:46 Heat of formation + Delta-G solvation = 34.839848 kcal Electronic energy + Delta-G solvation = -25452.842283 eV Core-core repulsion = 21848.860289 eV Total energy + Delta-G solvation = -3603.981994 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.07734 -39.41748 -37.41834 -36.60142 -34.39398 -32.97942 -32.55474 -30.37684 -29.58125 -29.12085 -28.87991 -26.88220 -24.64759 -23.21818 -21.90172 -21.43977 -21.22049 -20.58014 -19.51162 -17.36159 -17.10929 -16.88631 -16.36858 -16.11920 -15.44827 -15.30542 -15.16589 -14.70759 -14.13222 -13.89940 -13.80029 -13.46144 -13.24226 -12.96128 -12.75686 -12.60942 -12.46935 -12.14130 -12.04368 -11.78124 -11.71463 -11.35153 -11.32323 -11.13702 -11.06902 -10.96951 -10.73267 -10.03561 -9.77215 -9.53785 -9.34179 -9.08270 -9.02147 -8.85947 -8.03626 -7.54683 -6.93861 -6.70056 -4.31457 1.08342 1.17188 2.55782 3.01481 3.07527 3.09847 3.11970 3.22976 3.38744 3.54168 3.87838 3.94908 4.39247 4.56169 4.65590 4.78186 4.81737 4.89873 4.98578 5.10913 5.20471 5.21710 5.29415 5.39991 5.55799 5.67756 5.69324 5.74339 5.93998 6.15230 6.18990 6.23118 6.29418 6.42381 6.53405 6.69405 6.77564 6.94609 7.05592 7.10377 7.20339 7.29040 7.60412 7.73808 7.89756 8.04208 8.28265 8.29627 8.60626 8.78833 8.89713 9.00442 10.22394 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.038032 B = 0.002201 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.043383 B =12720.379805 C =12932.144305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.212 4.212 11 C -0.077 4.077 12 C -0.001 4.001 13 N -0.654 5.654 14 C 0.496 3.504 15 O -0.509 6.509 16 C 0.042 3.958 17 N -0.472 5.472 18 C 0.059 3.941 19 C -0.114 4.114 20 C -0.139 4.139 21 C -0.090 4.090 22 C -0.135 4.135 23 C -0.105 4.105 24 C -0.112 4.112 25 C 0.095 3.905 26 C -0.116 4.116 27 C -0.148 4.148 28 H 0.279 0.721 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.393 0.607 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.090 0.910 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 -19.454 -2.821 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.102 3.898 10 C -0.232 4.232 11 C -0.097 4.097 12 C -0.093 4.093 13 N -0.299 5.299 14 C 0.281 3.719 15 O -0.383 6.383 16 C -0.087 4.087 17 N -0.189 5.189 18 C -0.068 4.068 19 C -0.152 4.152 20 C -0.142 4.142 21 C -0.109 4.109 22 C -0.154 4.154 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.002 4.002 26 C -0.136 4.136 27 C -0.168 4.168 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.227 0.773 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.108 0.892 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.494 -18.999 -1.766 20.500 hybrid contribution -0.680 0.600 -0.667 1.126 sum -8.175 -18.399 -2.433 20.280 Atomic orbital electron populations 1.69813 1.07428 1.29012 1.36423 1.25912 0.94849 1.01275 0.92469 0.86250 0.80373 0.80517 0.79190 1.19368 1.20341 1.18656 1.19555 0.96124 0.90568 1.42515 0.90441 1.17683 0.91658 0.92191 0.88316 1.20698 1.03074 0.93105 1.06298 1.20228 0.93443 0.97632 0.98386 1.17146 0.96815 0.84100 1.11236 1.42986 1.54592 1.16533 1.15745 1.20324 0.81087 0.85385 0.85111 1.90720 1.45997 1.79369 1.22232 1.22071 1.01092 0.93130 0.92419 1.59611 1.48273 0.99349 1.11643 1.23145 0.87303 0.98962 0.97353 1.21769 0.98752 0.93359 1.01291 1.21056 0.94723 0.95623 1.02768 1.20389 0.99703 0.91685 0.99108 1.21043 0.94175 0.99354 1.00812 1.20931 0.96070 0.95589 0.99733 1.20564 0.99311 0.92081 1.01208 1.19608 0.92740 0.90215 0.97607 1.20247 0.99024 0.91995 1.02347 1.20956 0.98681 0.96085 1.01100 0.90972 0.88662 0.88153 0.77340 0.87955 0.91323 0.88931 0.89362 0.89451 0.90102 0.86278 0.85868 0.85615 0.85685 0.89203 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.76 10.83 55.55 0.60 -20.16 16 2 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 3 Si 0.91 18.78 29.57 -169.99 -5.03 13.75 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 6 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.20 9.05 -37.85 -0.34 -12.55 16 8 H 0.08 1.99 7.87 -52.49 -0.41 1.57 16 9 C 0.10 2.80 5.55 -106.80 -0.59 2.21 16 10 C -0.21 -5.42 9.74 -39.26 -0.38 -5.80 16 11 C -0.08 -1.86 8.57 -39.79 -0.34 -2.20 16 12 C 0.00 -0.02 6.25 -83.57 -0.52 -0.54 16 13 N -0.65 -11.30 5.30 -9.74 -0.05 -11.35 16 14 C 0.50 8.55 7.09 -10.99 -0.08 8.47 16 15 O -0.51 -11.04 13.62 5.56 0.08 -10.97 16 16 C 0.04 0.53 5.23 -4.97 -0.03 0.51 16 17 N -0.47 -6.45 4.60 -170.38 -0.78 -7.24 16 18 C 0.06 0.73 6.31 -2.43 -0.02 0.72 16 19 C -0.11 -1.10 6.93 -26.61 -0.18 -1.29 16 20 C -0.14 -1.49 6.23 -104.04 -0.65 -2.14 16 21 C -0.09 -0.82 10.03 -39.68 -0.40 -1.22 16 22 C -0.14 -1.13 10.06 -39.53 -0.40 -1.53 16 23 C -0.10 -0.92 10.02 -39.67 -0.40 -1.32 16 24 C -0.11 -1.20 10.04 -39.27 -0.39 -1.60 16 25 C 0.09 1.15 5.49 -83.40 -0.46 0.69 16 26 C -0.12 -2.64 9.90 -39.79 -0.39 -3.03 16 27 C -0.15 -3.81 8.61 -39.26 -0.34 -4.14 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.10 2.40 6.54 -52.49 -0.34 2.06 16 31 H 0.39 5.23 8.82 -40.82 -0.36 4.87 16 32 H 0.10 1.13 7.94 -51.93 -0.41 0.72 16 33 H 0.07 0.73 7.94 -51.93 -0.41 0.32 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.09 1.16 7.27 -51.93 -0.38 0.79 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 40 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 41 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 43 H 0.12 3.24 6.20 -52.49 -0.33 2.91 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -31.39 359.23 -11.36 -42.75 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -5.58 Total: 10.85 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -6.00 Total: -23.04 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.23 Total: -38.75 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.75 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.39 -11.36 -42.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007905300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.586 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds