Wall clock time and date at job start Tue Mar 31 2020 13:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48501 * 109.46870 * 269.99772 * 3 2 1 5 5 H 1.48500 * 109.47255 * 29.99677 * 3 2 1 6 6 H 1.48497 * 109.46750 * 149.99878 * 3 2 1 7 7 C 1.39902 * 120.00196 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00114 * 191.35066 * 7 2 1 9 9 C 1.41153 * 120.00086 * 11.34822 * 7 2 1 10 10 C 1.40866 * 120.16702 * 208.29088 * 9 7 2 11 11 C 1.36371 * 119.83111 * 180.02562 * 10 9 7 12 12 C 1.39483 * 120.16603 * 0.02562 * 11 10 9 13 13 N 1.39245 * 119.83212 * 179.97438 * 12 11 10 14 14 C 1.34780 * 119.99700 * 35.44676 * 13 12 11 15 15 O 1.21279 * 119.99912 * 4.89181 * 14 13 12 16 16 C 1.50696 * 119.99676 * 184.89487 * 14 13 12 17 17 N 1.46907 * 109.46802 * 181.80113 * 16 14 13 18 18 C 1.47897 * 111.00046 * 76.39312 * 17 16 14 19 19 C 1.54602 * 102.63101 * 94.65901 * 18 17 16 20 20 C 1.51574 * 102.81879 * 25.60607 * 19 18 17 21 21 C 1.37912 * 131.57460 * 163.76493 * 20 19 18 22 22 C 1.38305 * 120.08409 * 180.28614 * 21 20 19 23 23 C 1.38315 * 119.88072 * 0.03602 * 22 21 20 24 24 C 1.37907 * 120.26167 * 359.85104 * 23 22 21 25 25 C 1.38969 * 107.94193 * 343.81110 * 20 19 18 26 26 C 1.39476 * 120.33397 * 0.25371 * 12 11 10 27 27 C 1.36377 * 120.17020 * 359.48158 * 26 12 11 28 28 H 0.97002 * 120.00295 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.08298 * 0.02562 * 10 9 7 30 30 H 1.07993 * 119.91999 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00066 * 215.43592 * 13 12 11 32 32 H 1.09000 * 109.47068 * 61.80432 * 16 14 13 33 33 H 1.08999 * 109.47276 * 301.79641 * 16 14 13 34 34 H 1.09004 * 110.77770 * 212.94814 * 18 17 16 35 35 H 1.09007 * 110.77754 * 336.18299 * 18 17 16 36 36 H 1.09003 * 110.74499 * 143.93647 * 19 18 17 37 37 H 1.09000 * 110.74399 * 267.27686 * 19 18 17 38 38 H 1.07999 * 119.95972 * 0.29913 * 21 20 19 39 39 H 1.07995 * 120.06445 * 179.97438 * 22 21 20 40 40 H 1.07997 * 119.86433 * 179.87527 * 23 22 21 41 41 H 1.08005 * 119.89623 * 180.02562 * 24 23 22 42 42 H 1.08006 * 119.91354 * 179.74875 * 26 12 11 43 43 H 1.07995 * 120.08387 * 180.26206 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 2.4901 2.0464 -1.4001 5 1 1.4400 2.6527 0.7000 6 1 3.5401 1.4402 0.7001 7 6 2.0083 -1.2116 0.0005 8 1 3.0723 -1.2206 0.1846 9 6 1.3233 -2.4222 -0.2395 10 6 1.8010 -3.6272 0.3119 11 6 1.1341 -4.7929 0.0752 12 6 -0.0180 -4.7941 -0.7110 13 7 -0.6932 -5.9885 -0.9487 14 6 -0.7561 -6.9300 0.0137 15 8 -0.3023 -6.7025 1.1151 16 6 -1.3901 -8.2654 -0.2790 17 7 -1.3731 -9.0922 0.9352 18 6 -2.4187 -8.6580 1.8868 19 6 -3.5970 -9.5996 1.5472 20 6 -2.9009 -10.8099 0.9572 21 6 -3.3402 -12.0970 0.7283 22 6 -2.4865 -13.0323 0.1722 23 6 -1.1906 -12.6748 -0.1535 24 6 -0.7472 -11.3884 0.0712 25 6 -1.6026 -10.4391 0.6284 26 6 -0.4939 -3.6059 -1.2651 27 6 0.1592 -2.4315 -1.0328 28 1 -0.4851 0.8400 -0.0004 29 1 2.6933 -3.6278 0.9205 30 1 1.4994 -5.7176 0.4968 31 1 -1.1183 -6.1429 -1.8067 32 1 -0.8312 -8.7678 -1.0685 33 1 -2.4203 -8.1155 -0.6020 34 1 -2.0903 -8.8051 2.9157 35 1 -2.6901 -7.6164 1.7143 36 1 -4.1462 -9.8714 2.4486 37 1 -4.2596 -9.1398 0.8139 38 1 -4.3521 -12.3750 0.9834 39 1 -2.8306 -14.0402 -0.0065 40 1 -0.5236 -13.4059 -0.5859 41 1 0.2657 -11.1156 -0.1857 42 1 -1.3844 -3.6153 -1.8762 43 1 -0.2129 -1.5116 -1.4591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007905300.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:45 Heat of formation + Delta-G solvation = 17.117675 kcal Electronic energy + Delta-G solvation = -25453.610774 eV Core-core repulsion = 21848.860289 eV Total energy + Delta-G solvation = -3604.750485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99660 -40.86983 -39.06789 -37.56924 -36.12749 -34.73486 -33.42253 -31.56783 -31.35021 -30.55047 -29.84716 -28.09321 -26.35109 -24.02444 -23.51810 -22.77661 -22.16254 -21.94980 -21.00260 -19.27966 -18.43603 -18.09997 -17.50247 -17.19334 -16.96872 -16.34279 -16.18425 -15.94314 -15.71113 -15.25848 -14.87524 -14.63529 -14.59588 -14.31762 -14.01789 -13.85932 -13.67184 -13.56451 -13.31020 -13.24116 -13.05928 -12.79255 -12.73885 -12.48383 -12.43616 -12.18594 -11.79044 -11.75742 -11.41351 -11.19888 -10.95574 -10.70079 -10.30031 -9.72416 -9.48489 -8.87375 -8.81257 -8.57604 -6.30403 0.35343 0.46394 0.78900 1.12330 1.39047 1.44736 1.52494 1.81397 2.12204 2.22578 2.72634 2.78535 2.83340 3.60499 3.69350 3.75000 3.82683 3.97479 4.11804 4.15522 4.22775 4.29391 4.38662 4.48267 4.53273 4.54266 4.68995 4.73765 4.90480 4.92386 4.97728 5.11007 5.14559 5.16073 5.31370 5.41197 5.43103 5.51144 5.61775 5.65406 5.80306 5.83902 5.91468 6.02918 6.10805 6.29694 6.36798 6.64882 6.75308 6.93215 6.98341 7.42876 8.36385 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.038032 B = 0.002201 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.043383 B =12720.379805 C =12932.144305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.031 3.969 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.262 1.262 7 C -0.495 4.495 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.230 4.230 11 C -0.088 4.088 12 C 0.017 3.983 13 N -0.646 5.646 14 C 0.497 3.503 15 O -0.557 6.557 16 C 0.056 3.944 17 N -0.498 5.498 18 C 0.055 3.945 19 C -0.102 4.102 20 C -0.148 4.148 21 C -0.094 4.094 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.126 4.126 25 C 0.068 3.932 26 C -0.114 4.114 27 C -0.166 4.166 28 H 0.288 0.712 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.417 0.583 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.093 0.907 38 H 0.141 0.859 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.122 0.878 42 H 0.125 0.875 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -21.373 -4.059 23.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.091 0.909 9 C 0.070 3.930 10 C -0.250 4.250 11 C -0.108 4.108 12 C -0.077 4.077 13 N -0.292 5.292 14 C 0.285 3.715 15 O -0.434 6.434 16 C -0.073 4.073 17 N -0.215 5.215 18 C -0.071 4.071 19 C -0.140 4.140 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.146 4.146 25 C -0.028 4.028 26 C -0.134 4.134 27 C -0.186 4.186 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.254 0.746 32 H 0.141 0.859 33 H 0.115 0.885 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.120 0.880 37 H 0.111 0.889 38 H 0.159 0.841 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.140 0.860 42 H 0.143 0.857 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -9.250 -20.966 -3.038 23.116 hybrid contribution -0.199 0.965 -0.270 1.021 sum -9.449 -20.001 -3.308 22.367 Atomic orbital electron populations 1.69860 1.08768 1.30406 1.36770 1.26760 0.95690 1.04437 0.91395 0.85129 0.78775 0.75727 0.79596 1.18315 1.19292 1.18602 1.19771 0.96223 0.91772 1.44769 0.90877 1.18002 0.92811 0.92785 0.89407 1.20818 1.03578 0.93674 1.06949 1.20313 0.94390 0.96974 0.99160 1.17195 0.95763 0.85833 1.08861 1.42903 1.54150 1.14989 1.17184 1.21187 0.79768 0.86489 0.84061 1.90707 1.47948 1.80385 1.24339 1.21996 1.02283 0.90185 0.92850 1.59552 1.49311 1.00488 1.12136 1.23080 0.88513 0.98857 0.96685 1.21693 0.97690 0.92440 1.02216 1.21218 0.94328 0.96534 1.03037 1.20716 1.00932 0.91040 0.98562 1.21440 0.93694 1.00485 0.99289 1.21245 0.96848 0.95147 0.99112 1.20738 0.99228 0.92894 1.01772 1.19722 0.93941 0.89562 0.99535 1.20518 0.99613 0.91079 1.02148 1.20971 0.99028 0.96875 1.01688 0.90163 0.88915 0.88397 0.74564 0.85939 0.88547 0.90307 0.90730 0.88028 0.88861 0.84095 0.83036 0.83299 0.86027 0.85686 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.96 10.83 21.82 0.24 -43.73 16 2 C 0.03 1.58 5.24 85.24 0.45 2.03 16 3 Si 0.99 38.92 29.57 68.60 2.03 40.95 16 4 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 7 C -0.50 -27.52 9.05 23.39 0.21 -27.31 16 8 H 0.07 3.94 7.87 -2.91 -0.02 3.92 16 9 C 0.07 4.06 5.55 -21.28 -0.12 3.94 16 10 C -0.23 -12.32 9.74 22.48 0.22 -12.11 16 11 C -0.09 -4.37 8.57 22.13 0.19 -4.18 16 12 C 0.02 0.75 6.25 38.56 0.24 0.99 16 13 N -0.65 -21.33 5.30 -303.11 -1.61 -22.94 16 14 C 0.50 16.77 7.09 87.66 0.62 17.39 16 15 O -0.56 -24.56 13.62 -3.03 -0.04 -24.61 16 16 C 0.06 1.32 5.23 85.55 0.45 1.77 16 17 N -0.50 -13.28 4.60 -692.95 -3.19 -16.47 16 18 C 0.06 1.36 6.31 86.66 0.55 1.91 16 19 C -0.10 -1.80 6.93 30.67 0.21 -1.59 16 20 C -0.15 -2.87 6.23 -19.49 -0.12 -2.99 16 21 C -0.09 -1.41 10.03 22.21 0.22 -1.19 16 22 C -0.13 -1.71 10.06 22.30 0.22 -1.49 16 23 C -0.11 -1.56 10.02 22.21 0.22 -1.34 16 24 C -0.13 -2.53 10.04 22.47 0.23 -2.30 16 25 C 0.07 1.56 5.49 38.29 0.21 1.77 16 26 C -0.11 -5.11 9.90 22.13 0.22 -4.89 16 27 C -0.17 -8.70 8.61 22.48 0.19 -8.51 16 28 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 29 H 0.09 4.82 8.06 -2.91 -0.02 4.79 16 30 H 0.10 4.85 6.54 -2.91 -0.02 4.83 16 31 H 0.42 9.93 8.82 -92.71 -0.82 9.11 16 32 H 0.12 2.42 7.94 -2.39 -0.02 2.40 16 33 H 0.10 1.77 7.94 -2.39 -0.02 1.75 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.07 1.98 7.27 -2.38 -0.02 1.97 16 36 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.14 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 41 H 0.12 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 43 H 0.11 6.09 6.20 -2.91 -0.02 6.07 16 Total: -1.00 -71.21 359.23 2.06 -69.15 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.22 Total: 35.73 kcal Atomic # 6 Polarization: -42.51 SS G_CDS: 4.41 Total: -38.09 kcal Atomic # 7 Polarization: -78.57 SS G_CDS: -4.56 Total: -83.13 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.04 Total: -24.61 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Total: -71.21 2.06 -69.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007905300.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.268 kcal (2) G-P(sol) polarization free energy of solvation -71.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds