Wall clock time and date at job start Tue Mar 31 2020 13:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00105 * 2 1 4 4 H 1.48503 * 109.47250 * 270.00006 * 3 2 1 5 5 H 1.48493 * 109.47169 * 30.00369 * 3 2 1 6 6 H 1.48504 * 109.47281 * 150.00323 * 3 2 1 7 7 C 1.37883 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99842 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99551 * 179.97438 * 7 2 1 10 10 N 1.46510 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00051 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00045 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.47181 * 179.97438 * 13 11 10 15 15 C 1.39560 * 120.00089 * 179.97438 * 14 13 11 16 16 C 1.39041 * 120.03140 * 359.97438 * 15 14 13 17 17 C 1.37747 * 120.17833 * 179.97438 * 16 15 14 18 18 C 1.39712 * 120.06368 * 0.05055 * 17 16 15 19 19 C 1.39283 * 119.47638 * 359.95236 * 18 17 16 20 20 C 1.37746 * 120.36119 * 0.02562 * 19 18 17 21 21 C 1.50924 * 107.53702 * 180.02562 * 19 18 17 22 22 C 1.50900 * 106.03407 * 0.02562 * 21 19 18 23 23 C 1.37851 * 132.17253 * 180.27309 * 22 21 19 24 24 C 1.38398 * 120.03934 * 180.18939 * 23 22 21 25 25 C 1.38310 * 120.10048 * 359.48175 * 24 23 22 26 26 C 1.37967 * 120.25562 * 0.28172 * 25 24 23 27 27 C 1.39260 * 107.53929 * 359.97438 * 22 21 19 28 28 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47624 * 59.99736 * 9 7 2 30 30 H 1.08994 * 109.47397 * 299.99049 * 9 7 2 31 31 H 0.96997 * 119.99449 * 0.02562 * 10 9 7 32 32 H 1.08996 * 109.47301 * 59.99525 * 13 11 10 33 33 H 1.09000 * 109.46499 * 300.00113 * 13 11 10 34 34 H 0.97007 * 119.99722 * 0.02562 * 14 13 11 35 35 H 1.08000 * 119.91008 * 0.03035 * 16 15 14 36 36 H 1.08006 * 119.96662 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00213 * 179.97438 * 20 19 18 38 38 H 1.08994 * 110.13991 * 240.85978 * 21 19 18 39 39 H 1.08997 * 110.19117 * 119.17273 * 21 19 18 40 40 H 1.08000 * 119.98212 * 359.92371 * 23 22 21 41 41 H 1.08002 * 119.95392 * 179.76798 * 24 23 22 42 42 H 1.07993 * 119.87424 * 180.26027 * 25 24 23 43 43 H 1.07998 * 120.02055 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0020 12 8 6.1131 -1.8999 -0.0034 13 6 5.8273 -4.2425 -0.0024 14 7 7.2922 -4.2426 -0.0041 15 6 7.9900 -5.4512 -0.0043 16 6 7.2955 -6.6557 -0.0023 17 6 7.9811 -7.8504 -0.0030 18 6 9.3782 -7.8556 -0.0046 19 6 10.0681 -6.6456 -0.0065 20 6 9.3804 -5.4521 -0.0063 21 6 11.5435 -6.9632 -0.0086 22 6 11.6457 -8.4688 -0.0083 23 6 12.7277 -9.3229 -0.0048 24 6 12.5291 -10.6926 -0.0095 25 6 11.2454 -11.2074 -0.0069 26 6 10.1566 -10.3600 -0.0055 27 6 10.3493 -8.9774 -0.0057 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.3695 -3.3126 -0.0010 32 1 5.4632 -4.7563 -0.8921 33 1 5.4645 -4.7563 0.8878 34 1 7.7773 -3.4025 -0.0044 35 1 6.2155 -6.6546 -0.0011 36 1 7.4381 -8.7841 -0.0019 37 1 9.9211 -4.5172 -0.0074 38 1 12.0166 -6.5545 0.8842 39 1 12.0149 -6.5556 -0.9028 40 1 13.7309 -8.9231 -0.0027 41 1 13.3778 -11.3605 -0.0105 42 1 11.0947 -12.2768 -0.0064 43 1 9.1559 -10.7661 -0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000021982550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:37 Heat of formation + Delta-G solvation = 18.024178 kcal Electronic energy + Delta-G solvation = -24418.688522 eV Core-core repulsion = 20813.977346 eV Total energy + Delta-G solvation = -3604.711176 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91403 -39.48858 -38.51412 -36.02968 -34.50653 -33.57056 -32.49059 -31.77424 -30.77934 -29.28362 -27.91982 -27.18772 -25.95268 -23.61757 -22.32892 -21.60261 -21.16060 -20.67577 -20.02652 -18.02682 -17.17134 -16.80498 -16.39317 -15.83041 -15.53509 -15.48252 -15.30697 -14.93095 -14.67591 -14.54986 -14.07264 -13.77310 -13.68871 -13.57938 -13.34713 -13.06278 -12.70955 -12.59598 -12.46598 -12.40738 -12.20207 -11.99229 -11.55837 -11.12670 -11.03969 -10.89634 -10.85286 -10.47780 -10.05801 -9.60765 -9.51007 -9.16628 -9.00118 -8.87084 -8.81691 -8.34873 -7.27532 -6.28998 -4.32315 0.62643 1.13244 1.29653 1.85354 2.94475 3.09623 3.21023 3.28397 3.35010 3.40803 3.87867 3.94466 4.09572 4.26159 4.38957 4.56786 4.71768 4.75802 4.85682 5.04391 5.05999 5.08415 5.15459 5.22911 5.26841 5.28829 5.30493 5.34172 5.47734 5.59531 5.67908 5.75527 5.84777 6.04111 6.18562 6.23608 6.31877 6.37505 6.59469 6.63718 6.68063 6.74221 6.94541 7.01000 7.17829 7.26697 7.65273 7.98291 8.35646 8.59493 8.73019 9.30007 10.82762 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.043189 B = 0.001808 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.164559 B =15483.121947 C =16105.496027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.081 0.919 9 C 0.220 3.780 10 N -0.698 5.698 11 C 0.495 3.505 12 O -0.555 6.555 13 C 0.102 3.898 14 N -0.727 5.727 15 C 0.238 3.762 16 C -0.202 4.202 17 C -0.039 4.039 18 C -0.133 4.133 19 C -0.037 4.037 20 C -0.182 4.182 21 C -0.043 4.043 22 C -0.102 4.102 23 C -0.100 4.100 24 C -0.127 4.127 25 C -0.118 4.118 26 C -0.108 4.108 27 C -0.032 4.032 28 H 0.269 0.731 29 H 0.027 0.973 30 H 0.023 0.977 31 H 0.400 0.600 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.413 0.587 35 H 0.127 0.873 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.713 -20.934 0.016 30.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.186 1.186 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.098 3.902 10 N -0.346 5.346 11 C 0.279 3.721 12 O -0.435 6.435 13 C -0.026 4.026 14 N -0.357 5.357 15 C 0.133 3.867 16 C -0.225 4.225 17 C -0.058 4.058 18 C -0.135 4.135 19 C -0.038 4.038 20 C -0.205 4.205 21 C -0.079 4.079 22 C -0.103 4.103 23 C -0.118 4.118 24 C -0.145 4.145 25 C -0.136 4.136 26 C -0.127 4.127 27 C -0.032 4.032 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.040 0.960 31 H 0.234 0.766 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.251 0.749 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.139 0.861 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 22.827 -20.091 0.018 30.409 hybrid contribution -0.018 0.803 -0.022 0.803 sum 22.809 -19.288 -0.004 29.871 Atomic orbital electron populations 1.69874 1.06208 1.27540 1.49036 1.24794 0.94803 0.99185 0.93765 0.86813 0.80527 0.83237 0.79077 1.19811 1.20795 1.18574 1.21066 0.88355 0.95337 1.53774 0.90125 1.19548 0.95435 0.78210 0.96970 1.46130 1.05318 1.11513 1.71655 1.20372 0.83686 0.90380 0.77619 1.90651 1.55438 1.45945 1.51481 1.21131 0.82089 0.95908 1.03484 1.44441 1.04489 1.06196 1.80604 1.17708 0.90705 0.86116 0.92185 1.20530 0.99832 0.90694 1.11439 1.20558 0.92220 0.97465 0.95567 1.18928 0.92550 0.92167 1.09865 1.19888 0.94886 0.92636 0.96404 1.19683 0.91606 0.97301 1.11905 1.19506 0.93202 0.91790 1.03370 1.20283 0.93539 0.95276 1.01152 1.20364 0.97726 0.92784 1.00888 1.21065 0.97130 0.94788 1.01496 1.20982 0.92472 0.99536 1.00646 1.20853 0.99096 0.91800 1.00911 1.19253 0.93000 0.92245 0.98750 0.92154 0.95510 0.95961 0.76639 0.89215 0.89215 0.74870 0.85500 0.86131 0.85815 0.88378 0.88374 0.86065 0.85913 0.85960 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.96 55.43 0.77 -25.09 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 7 C -0.55 -14.54 9.83 -34.44 -0.34 -14.88 16 8 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 9 C 0.22 5.18 4.50 -5.19 -0.02 5.16 16 10 N -0.70 -13.04 5.55 -61.47 -0.34 -13.38 16 11 C 0.50 8.55 7.90 -10.99 -0.09 8.47 16 12 O -0.56 -11.59 15.67 5.55 0.09 -11.50 16 13 C 0.10 1.26 5.39 -5.19 -0.03 1.23 16 14 N -0.73 -9.22 5.70 -59.77 -0.34 -9.56 16 15 C 0.24 2.85 6.66 -83.75 -0.56 2.29 16 16 C -0.20 -2.21 9.29 -39.46 -0.37 -2.58 16 17 C -0.04 -0.42 10.08 -39.21 -0.40 -0.81 16 18 C -0.13 -1.52 6.20 -104.78 -0.65 -2.17 16 19 C -0.04 -0.41 6.30 -104.30 -0.66 -1.07 16 20 C -0.18 -2.06 9.88 -39.47 -0.39 -2.45 16 21 C -0.04 -0.38 6.71 -28.83 -0.19 -0.57 16 22 C -0.10 -1.00 6.30 -104.29 -0.66 -1.66 16 23 C -0.10 -0.82 10.04 -39.66 -0.40 -1.22 16 24 C -0.13 -0.96 10.05 -39.50 -0.40 -1.36 16 25 C -0.12 -0.94 10.02 -39.65 -0.40 -1.33 16 26 C -0.11 -1.00 10.09 -39.17 -0.40 -1.40 16 27 C -0.03 -0.35 6.20 -104.84 -0.65 -1.00 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.67 7.20 -51.93 -0.37 0.29 16 30 H 0.02 0.55 7.57 -51.93 -0.39 0.16 16 31 H 0.40 6.40 8.32 -40.82 -0.34 6.06 16 32 H 0.09 0.94 7.95 -51.93 -0.41 0.53 16 33 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 34 H 0.41 5.62 7.45 -40.82 -0.30 5.31 16 35 H 0.13 1.18 6.72 -52.49 -0.35 0.83 16 36 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.12 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.12 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -32.08 363.93 -11.23 -43.31 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: -5.55 Total: 7.74 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -6.68 Total: -13.28 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: 0.09 Total: -48.03 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.08 -11.23 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021982550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.333 kcal (2) G-P(sol) polarization free energy of solvation -32.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds