Wall clock time and date at job start Tue Mar 31 2020 13:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 120.00105 * 2 1 4 4 H 1.48503 * 109.47250 * 270.00006 * 3 2 1 5 5 H 1.48493 * 109.47169 * 30.00369 * 3 2 1 6 6 H 1.48504 * 109.47281 * 150.00323 * 3 2 1 7 7 C 1.37883 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99842 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99551 * 179.97438 * 7 2 1 10 10 N 1.46510 * 109.46854 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00051 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00045 * 359.97438 * 11 10 9 13 13 C 1.50701 * 120.00012 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.47181 * 179.97438 * 13 11 10 15 15 C 1.39560 * 120.00089 * 179.97438 * 14 13 11 16 16 C 1.39041 * 120.03140 * 359.97438 * 15 14 13 17 17 C 1.37747 * 120.17833 * 179.97438 * 16 15 14 18 18 C 1.39712 * 120.06368 * 0.05055 * 17 16 15 19 19 C 1.39283 * 119.47638 * 359.95236 * 18 17 16 20 20 C 1.37746 * 120.36119 * 0.02562 * 19 18 17 21 21 C 1.50924 * 107.53702 * 180.02562 * 19 18 17 22 22 C 1.50900 * 106.03407 * 0.02562 * 21 19 18 23 23 C 1.37851 * 132.17253 * 180.27309 * 22 21 19 24 24 C 1.38398 * 120.03934 * 180.18939 * 23 22 21 25 25 C 1.38310 * 120.10048 * 359.48175 * 24 23 22 26 26 C 1.37967 * 120.25562 * 0.28172 * 25 24 23 27 27 C 1.39260 * 107.53929 * 359.97438 * 22 21 19 28 28 H 0.96997 * 119.99875 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47624 * 59.99736 * 9 7 2 30 30 H 1.08994 * 109.47397 * 299.99049 * 9 7 2 31 31 H 0.96997 * 119.99449 * 0.02562 * 10 9 7 32 32 H 1.08996 * 109.47301 * 59.99525 * 13 11 10 33 33 H 1.09000 * 109.46499 * 300.00113 * 13 11 10 34 34 H 0.97007 * 119.99722 * 0.02562 * 14 13 11 35 35 H 1.08000 * 119.91008 * 0.03035 * 16 15 14 36 36 H 1.08006 * 119.96662 * 180.02562 * 17 16 15 37 37 H 1.07998 * 120.00213 * 179.97438 * 20 19 18 38 38 H 1.08994 * 110.13991 * 240.85978 * 21 19 18 39 39 H 1.08997 * 110.19117 * 119.17273 * 21 19 18 40 40 H 1.08000 * 119.98212 * 359.92371 * 23 22 21 41 41 H 1.08002 * 119.95392 * 179.76798 * 24 23 22 42 42 H 1.07993 * 119.87424 * 180.26027 * 25 24 23 43 43 H 1.07998 * 120.02055 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 3.9999 -2.5754 -0.0010 11 6 5.3249 -2.8217 -0.0020 12 8 6.1131 -1.8999 -0.0034 13 6 5.8273 -4.2425 -0.0024 14 7 7.2922 -4.2426 -0.0041 15 6 7.9900 -5.4512 -0.0043 16 6 7.2955 -6.6557 -0.0023 17 6 7.9811 -7.8504 -0.0030 18 6 9.3782 -7.8556 -0.0046 19 6 10.0681 -6.6456 -0.0065 20 6 9.3804 -5.4521 -0.0063 21 6 11.5435 -6.9632 -0.0086 22 6 11.6457 -8.4688 -0.0083 23 6 12.7277 -9.3229 -0.0048 24 6 12.5291 -10.6926 -0.0095 25 6 11.2454 -11.2074 -0.0069 26 6 10.1566 -10.3600 -0.0055 27 6 10.3493 -8.9774 -0.0057 28 1 -0.4850 0.8400 0.0004 29 1 3.8753 -0.6804 0.8888 30 1 3.8745 -0.6802 -0.8911 31 1 3.3695 -3.3126 -0.0010 32 1 5.4632 -4.7563 -0.8921 33 1 5.4645 -4.7563 0.8878 34 1 7.7773 -3.4025 -0.0044 35 1 6.2155 -6.6546 -0.0011 36 1 7.4381 -8.7841 -0.0019 37 1 9.9211 -4.5172 -0.0074 38 1 12.0166 -6.5545 0.8842 39 1 12.0149 -6.5556 -0.9028 40 1 13.7309 -8.9231 -0.0027 41 1 13.3778 -11.3605 -0.0105 42 1 11.0947 -12.2768 -0.0064 43 1 9.1559 -10.7661 -0.0039 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000021982550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:36 Heat of formation + Delta-G solvation = -1.040536 kcal Electronic energy + Delta-G solvation = -24419.515230 eV Core-core repulsion = 20813.977346 eV Total energy + Delta-G solvation = -3605.537884 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64499 -40.80498 -39.37250 -36.91610 -36.17939 -34.47641 -34.35267 -32.55192 -31.49712 -30.64499 -29.17907 -27.90518 -27.04412 -24.36477 -24.07884 -22.40498 -21.91632 -21.68406 -21.23721 -19.43960 -18.39301 -17.86381 -17.51460 -16.94733 -16.79324 -16.66736 -16.35383 -15.82579 -15.66205 -15.46710 -15.22998 -14.99424 -14.76619 -14.52762 -14.40357 -14.12200 -14.01027 -13.98611 -13.55622 -13.16867 -13.11914 -13.05392 -12.89162 -12.71802 -12.18991 -11.95686 -11.67773 -11.67034 -11.64693 -11.29935 -11.02010 -10.93599 -10.03157 -9.87662 -9.72701 -9.51864 -8.41296 -8.11625 -6.48600 -0.09577 0.48742 0.50979 1.10124 1.31622 1.34561 1.45738 1.56720 1.99922 2.26542 2.65755 2.70187 2.94246 3.19305 3.39711 3.67715 3.74786 3.87714 4.04548 4.14690 4.24671 4.30877 4.37324 4.40397 4.44348 4.55945 4.64428 4.71133 4.74559 4.78355 4.88695 4.98960 4.99898 5.11514 5.13795 5.23441 5.29382 5.41534 5.44823 5.59151 5.64442 5.67314 5.80102 5.89636 6.04712 6.13756 6.30027 6.52367 6.64822 6.77665 7.11657 7.28935 8.73235 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.043189 B = 0.001808 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.164559 B =15483.121947 C =16105.496027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.549 4.549 8 H 0.062 0.938 9 C 0.231 3.769 10 N -0.698 5.698 11 C 0.497 3.503 12 O -0.592 6.592 13 C 0.116 3.884 14 N -0.735 5.735 15 C 0.224 3.776 16 C -0.206 4.206 17 C -0.048 4.048 18 C -0.145 4.145 19 C -0.051 4.051 20 C -0.191 4.191 21 C -0.041 4.041 22 C -0.116 4.116 23 C -0.107 4.107 24 C -0.126 4.126 25 C -0.124 4.124 26 C -0.120 4.120 27 C -0.063 4.063 28 H 0.272 0.728 29 H 0.015 0.985 30 H 0.013 0.987 31 H 0.413 0.587 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.406 0.594 35 H 0.144 0.856 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.142 0.858 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.539 -22.513 -0.014 33.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.761 3.239 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.586 4.586 8 H 0.080 0.920 9 C 0.107 3.893 10 N -0.348 5.348 11 C 0.284 3.716 12 O -0.474 6.474 13 C -0.012 4.012 14 N -0.366 5.366 15 C 0.119 3.881 16 C -0.228 4.228 17 C -0.067 4.067 18 C -0.147 4.147 19 C -0.051 4.051 20 C -0.214 4.214 21 C -0.077 4.077 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.144 4.144 25 C -0.142 4.142 26 C -0.138 4.138 27 C -0.063 4.063 28 H 0.081 0.919 29 H 0.032 0.968 30 H 0.031 0.969 31 H 0.249 0.751 32 H 0.133 0.867 33 H 0.133 0.867 34 H 0.244 0.756 35 H 0.162 0.838 36 H 0.157 0.843 37 H 0.148 0.852 38 H 0.128 0.872 39 H 0.128 0.872 40 H 0.160 0.840 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 24.661 -21.725 -0.013 32.865 hybrid contribution -0.512 1.124 -0.012 1.235 sum 24.149 -20.601 -0.025 31.742 Atomic orbital electron populations 1.69979 1.07687 1.28616 1.50572 1.25592 0.95520 1.02646 0.93612 0.85868 0.79258 0.79429 0.79388 1.19078 1.19946 1.18426 1.21302 0.89942 0.94684 1.52710 0.91976 1.19128 0.93401 0.80859 0.95868 1.45927 1.06488 1.10053 1.72315 1.21141 0.82519 0.92180 0.75785 1.90635 1.56172 1.47784 1.52763 1.21123 0.82075 0.92195 1.05799 1.44422 1.04405 1.06190 1.81574 1.17836 0.90996 0.86073 0.93171 1.20751 1.00722 0.90354 1.10963 1.20818 0.92246 0.98240 0.95351 1.19263 0.93204 0.92788 1.09460 1.20171 0.96168 0.92475 0.96314 1.19844 0.91761 0.97804 1.11980 1.19552 0.92085 0.91694 1.04394 1.20531 0.93801 0.95768 1.01529 1.20692 0.98340 0.93090 1.00380 1.21466 0.97955 0.95008 1.00001 1.21326 0.92304 1.00664 0.99886 1.21104 1.00236 0.91539 1.00926 1.19452 0.93343 0.92866 1.00598 0.91850 0.96760 0.96862 0.75061 0.86725 0.86738 0.75645 0.83839 0.84336 0.85223 0.87235 0.87230 0.83985 0.83310 0.83668 0.85220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.96 21.45 0.30 -54.29 16 2 C 0.03 1.49 5.47 84.66 0.46 1.95 16 3 Si 0.94 43.16 27.47 68.60 1.88 45.05 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 6 H -0.26 -11.83 6.54 99.48 0.65 -11.18 16 7 C -0.55 -29.32 9.83 25.60 0.25 -29.07 16 8 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 9 C 0.23 10.83 4.50 85.63 0.38 11.22 16 10 N -0.70 -25.53 5.55 -466.78 -2.59 -28.12 16 11 C 0.50 16.65 7.90 87.66 0.69 17.34 16 12 O -0.59 -24.52 15.67 -3.04 -0.05 -24.56 16 13 C 0.12 2.62 5.39 85.63 0.46 3.08 16 14 N -0.73 -17.86 5.70 -343.02 -1.96 -19.81 16 15 C 0.22 5.13 6.66 38.29 0.25 5.38 16 16 C -0.21 -4.19 9.29 22.35 0.21 -3.99 16 17 C -0.05 -0.97 10.08 22.51 0.23 -0.74 16 18 C -0.15 -3.24 6.20 -19.97 -0.12 -3.36 16 19 C -0.05 -1.09 6.30 -19.66 -0.12 -1.22 16 20 C -0.19 -4.27 9.88 22.34 0.22 -4.05 16 21 C -0.04 -0.70 6.71 29.24 0.20 -0.51 16 22 C -0.12 -2.15 6.30 -19.65 -0.12 -2.27 16 23 C -0.11 -1.55 10.04 22.22 0.22 -1.33 16 24 C -0.13 -1.60 10.05 22.33 0.22 -1.38 16 25 C -0.12 -1.70 10.02 22.22 0.22 -1.47 16 26 C -0.12 -2.07 10.09 22.53 0.23 -1.85 16 27 C -0.06 -1.30 6.20 -20.00 -0.12 -1.43 16 28 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 29 H 0.01 0.72 7.20 -2.39 -0.02 0.70 16 30 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 31 H 0.41 12.79 8.32 -92.71 -0.77 12.02 16 32 H 0.12 2.08 7.95 -2.39 -0.02 2.07 16 33 H 0.11 2.08 7.94 -2.39 -0.02 2.07 16 34 H 0.41 10.94 7.45 -92.70 -0.69 10.25 16 35 H 0.14 2.32 6.72 -2.91 -0.02 2.30 16 36 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 37 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.53 16 39 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 41 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 42 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 43 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -69.42 363.93 0.89 -68.53 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: -0.46 Total: 26.89 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 3.76 Total: -13.68 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -4.25 Total: -102.22 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.05 kcal Total: -69.42 0.89 -68.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000021982550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.490 kcal (2) G-P(sol) polarization free energy of solvation -69.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds