Wall clock time and date at job start Tue Mar 31 2020 14:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86799 * 120.00152 * 2 1 4 4 H 1.48499 * 109.47235 * 274.57824 * 3 2 1 5 5 H 1.48502 * 109.46933 * 34.57623 * 3 2 1 6 6 H 1.48505 * 109.47422 * 154.57389 * 3 2 1 7 7 C 1.39941 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99840 * 340.67978 * 7 2 1 9 9 C 1.41432 * 120.00110 * 160.94774 * 7 2 1 10 10 C 1.40793 * 120.17578 * 330.65304 * 9 7 2 11 11 C 1.37714 * 120.03632 * 179.76450 * 10 9 7 12 12 C 1.38372 * 120.41366 * 0.51123 * 11 10 9 13 13 C 1.39875 * 120.35990 * 359.74197 * 12 11 10 14 14 C 1.47879 * 120.02753 * 180.02562 * 13 12 11 15 15 O 1.21555 * 119.99909 * 28.07711 * 14 13 12 16 16 N 1.34778 * 120.00078 * 208.07002 * 14 13 12 17 17 C 1.47423 * 125.64878 * 355.32068 * 16 14 13 18 18 C 1.55137 * 104.72031 * 155.81319 * 17 16 14 19 19 C 1.55154 * 101.48606 * 37.29463 * 18 17 16 20 20 C 1.47023 * 125.64503 * 175.62243 * 16 14 13 21 21 H 1.09001 * 109.88348 * 300.44509 * 20 16 14 22 22 C 1.50697 * 109.88395 * 61.61293 * 20 16 14 23 23 C 1.38652 * 120.78874 * 39.71517 * 22 20 16 24 24 C 1.38208 * 119.16283 * 179.80181 * 23 22 20 25 25 N 1.31878 * 120.76031 * 0.48318 * 24 23 22 26 26 C 1.31867 * 121.72808 * 359.74535 * 25 24 23 27 27 C 1.38206 * 120.76270 * 0.02562 * 26 25 24 28 28 C 1.39043 * 119.94665 * 359.97438 * 13 12 11 29 29 H 0.96991 * 120.00225 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.98120 * 359.97438 * 10 9 7 31 31 H 1.07999 * 119.78824 * 180.22999 * 11 10 9 32 32 H 1.08000 * 119.82143 * 179.72183 * 12 11 10 33 33 H 1.08996 * 110.36477 * 274.74289 * 17 16 14 34 34 H 1.09003 * 110.36740 * 37.06966 * 17 16 14 35 35 H 1.08999 * 111.19124 * 279.19029 * 18 17 16 36 36 H 1.09000 * 110.93731 * 155.29109 * 18 17 16 37 37 H 1.08996 * 110.72325 * 205.96856 * 19 18 17 38 38 H 1.09005 * 110.86983 * 82.76736 * 19 18 17 39 39 H 1.08000 * 120.42023 * 0.02562 * 23 22 20 40 40 H 1.07992 * 119.62242 * 180.25162 * 24 23 22 41 41 H 1.07994 * 119.61852 * 179.97438 * 26 25 24 42 42 H 1.07995 * 120.41496 * 179.97438 * 27 26 25 43 43 H 1.07999 * 120.20015 * 180.02562 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3930 2.1023 -1.3956 5 1 1.4914 2.6228 0.7946 6 1 3.5849 1.4142 0.6011 7 6 2.0080 -1.2119 0.0005 8 1 1.5136 -2.1207 0.3104 9 6 3.3642 -1.2456 -0.3993 10 6 3.8490 -0.3138 -1.3367 11 6 5.1712 -0.3462 -1.7204 12 6 6.0291 -1.2978 -1.1978 13 6 5.5643 -2.2350 -0.2693 14 6 6.4876 -3.2485 0.2849 15 8 7.6755 -3.0056 0.3715 16 7 6.0121 -4.4413 0.6940 17 6 4.5909 -4.8307 0.7372 18 6 4.6040 -6.3799 0.6564 19 6 5.8558 -6.7231 1.5063 20 6 6.8244 -5.5675 1.1772 21 1 7.5239 -5.8796 0.4017 22 6 7.5776 -5.1612 2.4176 23 6 6.9777 -4.3693 3.3847 24 6 7.6983 -4.0200 4.5112 25 7 8.9443 -4.4230 4.6666 26 6 9.5481 -5.1730 3.7656 27 6 8.8890 -5.5654 2.6160 28 6 4.2335 -2.2123 0.1329 29 1 -0.4850 0.8400 0.0004 30 1 3.1844 0.4289 -1.7527 31 1 5.5398 0.3729 -2.4370 32 1 7.0632 -1.3173 -1.5087 33 1 4.1354 -4.5011 1.6709 34 1 4.0566 -4.4114 -0.1154 35 1 4.7249 -6.7198 -0.3722 36 1 3.7023 -6.8008 1.1013 37 1 6.2791 -7.6799 1.2007 38 1 5.6132 -6.7321 2.5690 39 1 5.9590 -4.0326 3.2611 40 1 7.2370 -3.4068 5.2711 41 1 10.5697 -5.4834 3.9275 42 1 9.3890 -6.1793 1.8816 43 1 3.8703 -2.9337 0.8499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045078612.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:12 Heat of formation + Delta-G solvation = 15.010075 kcal Electronic energy + Delta-G solvation = -26783.193502 eV Core-core repulsion = 23178.351625 eV Total energy + Delta-G solvation = -3604.841877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.89564 -40.69263 -39.26025 -38.36546 -35.54536 -34.24474 -32.96905 -32.39382 -32.14152 -31.42600 -29.38817 -27.12630 -25.88698 -24.50013 -24.18413 -23.02605 -22.83495 -21.74554 -20.71039 -19.21144 -18.14040 -17.99178 -17.68922 -17.16301 -16.71659 -16.57481 -16.48382 -16.06167 -15.55359 -15.31047 -15.01395 -14.70581 -14.56263 -14.49243 -14.28679 -14.21628 -13.91887 -13.82425 -13.40738 -13.32690 -12.86959 -12.70479 -12.66296 -12.47438 -12.32707 -12.01424 -11.79910 -11.70105 -11.42203 -11.26135 -10.86914 -10.57002 -10.42450 -10.09263 -9.83195 -9.63732 -9.53580 -8.92726 -6.51948 0.18790 0.19764 0.27654 0.71549 1.25707 1.38935 1.45814 1.83608 1.93456 2.10031 2.60854 2.84793 3.38414 3.41671 3.52329 3.56436 3.69761 3.84150 3.90967 4.12351 4.14844 4.22618 4.25451 4.33485 4.39823 4.50422 4.56652 4.67126 4.76311 4.78933 4.85080 4.87202 4.91139 4.93854 5.03854 5.08400 5.13882 5.20089 5.31490 5.37337 5.49988 5.63218 5.74781 5.76053 5.84911 6.07371 6.31425 6.38929 6.62947 6.78947 6.99739 7.10067 8.14560 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016015 B = 0.003745 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.961927 B = 7474.573873 C = 7717.406500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.057 3.943 3 Si 0.951 3.049 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.474 4.474 8 H 0.072 0.928 9 C 0.069 3.931 10 C -0.231 4.231 11 C -0.085 4.085 12 C -0.187 4.187 13 C -0.109 4.109 14 C 0.578 3.422 15 O -0.574 6.574 16 N -0.604 5.604 17 C 0.082 3.918 18 C -0.122 4.122 19 C -0.109 4.109 20 C 0.168 3.832 21 H 0.089 0.911 22 C -0.045 4.045 23 C -0.167 4.167 24 C 0.084 3.916 25 N -0.512 5.512 26 C 0.089 3.911 27 C -0.163 4.163 28 C -0.179 4.179 29 H 0.294 0.706 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.125 0.875 40 H 0.166 0.834 41 H 0.182 0.818 42 H 0.158 0.842 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.461 -13.252 3.188 16.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.159 4.159 3 Si 0.775 3.225 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.184 1.184 7 C -0.503 4.503 8 H 0.090 0.910 9 C 0.066 3.934 10 C -0.251 4.251 11 C -0.103 4.103 12 C -0.207 4.207 13 C -0.112 4.112 14 C 0.370 3.630 15 O -0.455 6.455 16 N -0.336 5.336 17 C -0.040 4.040 18 C -0.160 4.160 19 C -0.147 4.147 20 C 0.066 3.934 21 H 0.107 0.893 22 C -0.054 4.054 23 C -0.187 4.187 24 C -0.071 4.071 25 N -0.222 5.222 26 C -0.067 4.067 27 C -0.183 4.183 28 C -0.199 4.199 29 H 0.105 0.895 30 H 0.122 0.878 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.128 0.872 37 H 0.132 0.868 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.183 0.817 41 H 0.199 0.801 42 H 0.176 0.824 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.258 -12.731 3.974 16.826 hybrid contribution -0.617 0.994 -0.781 1.407 sum 9.641 -11.738 3.193 15.521 Atomic orbital electron populations 1.69699 1.08904 1.31488 1.36321 1.26633 0.95155 1.03652 0.90497 0.85703 0.79548 0.77608 0.79602 1.18171 1.20404 1.18442 1.19435 0.94208 0.96089 1.40595 0.91027 1.17811 0.92922 0.92002 0.90617 1.21401 0.96616 1.04197 1.02846 1.20882 0.92902 0.97637 0.98905 1.20687 0.99180 0.98387 1.02453 1.19638 0.93800 0.97357 1.00367 1.18298 0.87032 0.81191 0.76493 1.90689 1.17894 1.79286 1.57589 1.48431 1.09082 1.12618 1.63484 1.22990 0.81048 0.97328 1.02590 1.22885 0.99290 0.92032 1.01764 1.22718 0.94024 0.96537 1.01444 1.20758 0.93710 0.86822 0.92150 0.89276 1.20673 0.94814 0.94811 0.95114 1.21983 1.01799 0.99575 0.95382 1.22960 0.90290 0.97094 0.96802 1.67674 1.10848 1.11720 1.31966 1.23203 1.00870 0.93055 0.89612 1.22245 0.94172 1.02119 0.99805 1.21817 0.91318 1.03329 1.03421 0.89498 0.87835 0.85012 0.86996 0.90622 0.90145 0.89529 0.87229 0.86834 0.89834 0.85700 0.81700 0.80129 0.82435 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.16 13.93 21.83 0.30 -42.85 16 2 C 0.06 2.86 5.39 85.26 0.46 3.32 16 3 Si 0.95 40.99 24.54 68.60 1.68 42.67 16 4 H -0.26 -10.44 6.66 99.48 0.66 -9.78 16 5 H -0.28 -11.31 7.11 99.48 0.71 -10.61 16 6 H -0.26 -11.77 6.93 99.48 0.69 -11.08 16 7 C -0.47 -24.38 9.56 23.47 0.22 -24.15 16 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 9 C 0.07 3.29 5.11 -21.32 -0.11 3.18 16 10 C -0.23 -10.50 7.22 22.77 0.16 -10.34 16 11 C -0.09 -3.49 10.01 22.18 0.22 -3.27 16 12 C -0.19 -7.82 9.60 22.70 0.22 -7.60 16 13 C -0.11 -4.54 5.69 -20.14 -0.11 -4.66 16 14 C 0.58 22.28 7.35 86.80 0.64 22.92 16 15 O -0.57 -25.09 16.40 -3.89 -0.06 -25.16 16 16 N -0.60 -17.76 2.44 -795.06 -1.94 -19.70 16 17 C 0.08 2.03 5.04 86.94 0.44 2.47 16 18 C -0.12 -1.92 7.10 32.06 0.23 -1.69 16 19 C -0.11 -1.62 6.46 31.78 0.21 -1.41 16 20 C 0.17 3.86 3.11 44.59 0.14 4.00 16 21 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 22 C -0.05 -1.14 4.00 -19.67 -0.08 -1.22 16 23 C -0.17 -4.58 9.28 22.36 0.21 -4.38 16 24 C 0.08 2.29 11.18 84.68 0.95 3.23 16 25 N -0.51 -14.20 10.36 -195.85 -2.03 -16.23 16 26 C 0.09 2.05 11.18 84.68 0.95 3.00 16 27 C -0.16 -3.64 9.79 22.36 0.22 -3.42 16 28 C -0.18 -7.66 7.66 23.01 0.18 -7.48 16 29 H 0.29 13.69 8.30 -92.71 -0.77 12.92 16 30 H 0.10 4.66 4.70 -2.91 -0.01 4.65 16 31 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 32 H 0.11 4.48 7.88 -2.91 -0.02 4.45 16 33 H 0.08 1.85 7.32 -2.39 -0.02 1.83 16 34 H 0.08 2.33 6.13 -2.39 -0.01 2.31 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.08 1.22 7.79 -2.38 -0.02 1.20 16 39 H 0.13 3.45 7.81 -2.91 -0.02 3.43 16 40 H 0.17 3.78 8.06 -2.91 -0.02 3.76 16 41 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 43 H 0.13 5.15 4.61 -2.91 -0.01 5.13 16 Total: -1.00 -65.31 350.39 4.06 -61.25 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.97 Total: 27.53 kcal Atomic # 6 Polarization: -32.63 SS G_CDS: 5.13 Total: -27.50 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -3.66 Total: -78.79 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.06 Total: -25.16 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 1.68 Total: 42.67 kcal Total: -65.31 4.06 -61.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045078612.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.257 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds