Wall clock time and date at job start Tue Mar 31 2020 14:02:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86799 * 120.00547 * 2 1 4 4 H 1.48503 * 109.46920 * 269.63093 * 3 2 1 5 5 H 1.48503 * 109.46800 * 29.62864 * 3 2 1 6 6 H 1.48494 * 109.47253 * 149.63075 * 3 2 1 7 7 C 1.39942 * 119.99531 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00096 * 348.03934 * 7 2 1 9 9 C 1.41437 * 120.00003 * 168.03298 * 7 2 1 10 10 C 1.40791 * 120.17651 * 329.78964 * 9 7 2 11 11 C 1.37711 * 120.03783 * 179.97438 * 10 9 7 12 12 C 1.38375 * 120.41142 * 359.75766 * 11 10 9 13 13 C 1.39874 * 120.36025 * 0.51976 * 12 11 10 14 14 C 1.47886 * 120.02579 * 179.73736 * 13 12 11 15 15 O 1.21551 * 120.00001 * 164.20027 * 14 13 12 16 16 N 1.34769 * 120.00074 * 344.19833 * 14 13 12 17 17 C 1.47421 * 125.64941 * 186.91635 * 16 14 13 18 18 C 1.54913 * 104.83486 * 204.15239 * 17 16 14 19 19 C 1.55156 * 101.57870 * 322.99074 * 18 17 16 20 20 C 1.47027 * 125.64730 * 6.94284 * 16 14 13 21 21 H 1.08999 * 110.01050 * 59.43363 * 20 16 14 22 22 C 1.50698 * 109.88303 * 298.33441 * 20 16 14 23 23 C 1.38654 * 120.78783 * 147.01699 * 22 20 16 24 24 C 1.38201 * 119.16005 * 180.02562 * 23 22 20 25 25 N 1.31865 * 120.76544 * 0.25101 * 24 23 22 26 26 C 1.31872 * 121.72718 * 359.48017 * 25 24 23 27 27 C 1.38204 * 120.75986 * 0.52129 * 26 25 24 28 28 C 1.39035 * 119.94768 * 359.46438 * 13 12 11 29 29 H 0.96999 * 119.99476 * 359.97438 * 1 2 3 30 30 H 1.07998 * 119.98194 * 0.02562 * 10 9 7 31 31 H 1.08002 * 119.79277 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.81567 * 180.25612 * 12 11 10 33 33 H 1.08998 * 110.36780 * 85.31119 * 17 16 14 34 34 H 1.09002 * 110.45959 * 323.03396 * 17 16 14 35 35 H 1.08999 * 111.00793 * 204.91913 * 18 17 16 36 36 H 1.09003 * 111.00698 * 81.06224 * 18 17 16 37 37 H 1.09004 * 110.72057 * 277.13935 * 19 18 17 38 38 H 1.09005 * 110.72011 * 153.86621 * 19 18 17 39 39 H 1.07998 * 120.41860 * 0.04582 * 23 22 20 40 40 H 1.08002 * 119.61894 * 179.97438 * 24 23 22 41 41 H 1.07998 * 119.62061 * 180.26565 * 26 25 24 42 42 H 1.08001 * 120.41719 * 179.76425 * 27 26 25 43 43 H 1.07997 * 120.20580 * 180.25694 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4978 2.0418 -1.4001 5 1 1.4360 2.6549 0.6922 6 1 3.5360 1.4423 0.7078 7 6 2.0079 -1.2120 -0.0005 8 1 1.4854 -2.1372 0.1929 9 6 3.3992 -1.2253 -0.2545 10 6 3.9756 -0.2490 -1.0893 11 6 5.3307 -0.2644 -1.3343 12 6 6.1353 -1.2328 -0.7602 13 6 5.5797 -2.2142 0.0672 14 6 6.4457 -3.2491 0.6722 15 8 6.0361 -3.9171 1.6014 16 7 7.6891 -3.4515 0.1933 17 6 8.6008 -4.5360 0.6009 18 6 10.0197 -4.0014 0.2837 19 6 9.7707 -3.2189 -1.0328 20 6 8.3611 -2.6272 -0.8218 21 1 8.4398 -1.5973 -0.4736 22 6 7.5871 -2.6734 -2.1141 23 6 7.5477 -1.5735 -2.9575 24 6 6.8271 -1.6527 -4.1340 25 7 6.1785 -2.7551 -4.4549 26 6 6.1980 -3.8217 -3.6797 27 6 6.8972 -3.8165 -2.4876 28 6 4.2135 -2.2126 0.3250 29 1 -0.4849 0.8401 0.0004 30 1 3.3548 0.5128 -1.5372 31 1 5.7687 0.4867 -1.9749 32 1 7.1975 -1.2333 -0.9555 33 1 8.3979 -5.4387 0.0248 34 1 8.5009 -4.7370 1.6675 35 1 10.7197 -4.8216 0.1241 36 1 10.3723 -3.3368 1.0724 37 1 9.7818 -3.8925 -1.8898 38 1 10.5078 -2.4253 -1.1551 39 1 8.0738 -0.6666 -2.6983 40 1 6.7910 -0.8003 -4.7963 41 1 5.6579 -4.7082 -3.9779 42 1 6.9062 -4.6919 -1.8551 43 1 3.7807 -2.9659 0.9665 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045078613.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:15 Heat of formation + Delta-G solvation = 44.066825 kcal Electronic energy + Delta-G solvation = -27736.417780 eV Core-core repulsion = 24132.835898 eV Total energy + Delta-G solvation = -3603.581882 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.36864 -40.46355 -39.33006 -38.46395 -35.71101 -34.33454 -33.08388 -32.32047 -31.67385 -31.59256 -29.49256 -27.14811 -26.00954 -24.36880 -24.23976 -22.89680 -22.59556 -21.93192 -20.78035 -19.47528 -18.18394 -17.90363 -17.82105 -17.05341 -16.77776 -16.47048 -16.33429 -16.02888 -15.68758 -15.40917 -14.87398 -14.68067 -14.61740 -14.46657 -14.28360 -14.20569 -13.93125 -13.77801 -13.58468 -13.12923 -12.92139 -12.66566 -12.50629 -12.43729 -12.20199 -12.11901 -11.73540 -11.65850 -11.36850 -11.26496 -10.82119 -10.49646 -10.29803 -10.02332 -9.81998 -9.53921 -9.39837 -8.91323 -6.58111 0.11991 0.32928 0.38138 0.78178 1.20930 1.38388 1.44642 1.81387 1.92482 2.08803 2.62358 2.96319 3.36616 3.40208 3.51967 3.61268 3.71337 3.86427 3.96989 4.15239 4.17237 4.23496 4.26143 4.35773 4.45790 4.49371 4.55634 4.77221 4.80314 4.83620 4.87008 4.87968 4.96548 4.96903 5.09423 5.12118 5.12963 5.25134 5.37153 5.39325 5.42086 5.60366 5.67939 5.80884 5.88881 6.08441 6.26287 6.37387 6.62878 6.71363 7.06894 7.17474 8.18351 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.014981 B = 0.004992 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.554737 B = 5607.915972 C = 6450.394544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.040 3.960 3 Si 0.976 3.024 4 H -0.246 1.246 5 H -0.280 1.280 6 H -0.250 1.250 7 C -0.488 4.488 8 H 0.043 0.957 9 C 0.065 3.935 10 C -0.224 4.224 11 C -0.081 4.081 12 C -0.201 4.201 13 C -0.110 4.110 14 C 0.576 3.424 15 O -0.587 6.587 16 N -0.606 5.606 17 C 0.092 3.908 18 C -0.117 4.117 19 C -0.112 4.112 20 C 0.155 3.845 21 H 0.116 0.884 22 C -0.039 4.039 23 C -0.152 4.152 24 C 0.090 3.910 25 N -0.514 5.514 26 C 0.083 3.917 27 C -0.167 4.167 28 C -0.170 4.170 29 H 0.294 0.706 30 H 0.105 0.895 31 H 0.147 0.853 32 H 0.179 0.821 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.113 0.887 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.173 0.827 40 H 0.176 0.824 41 H 0.152 0.848 42 H 0.117 0.883 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.407 -0.333 -6.555 26.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.173 4.173 3 Si 0.799 3.201 4 H -0.171 1.171 5 H -0.207 1.207 6 H -0.174 1.174 7 C -0.518 4.518 8 H 0.062 0.938 9 C 0.063 3.937 10 C -0.243 4.243 11 C -0.099 4.099 12 C -0.219 4.219 13 C -0.113 4.113 14 C 0.368 3.632 15 O -0.468 6.468 16 N -0.338 5.338 17 C -0.030 4.030 18 C -0.155 4.155 19 C -0.150 4.150 20 C 0.052 3.948 21 H 0.133 0.867 22 C -0.048 4.048 23 C -0.172 4.172 24 C -0.066 4.066 25 N -0.224 5.224 26 C -0.073 4.073 27 C -0.187 4.187 28 C -0.190 4.190 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.165 0.835 32 H 0.195 0.805 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.190 0.810 40 H 0.193 0.807 41 H 0.169 0.831 42 H 0.135 0.865 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 24.366 -0.654 -6.793 25.304 hybrid contribution -1.104 -0.153 1.196 1.635 sum 23.262 -0.807 -5.597 23.939 Atomic orbital electron populations 1.69694 1.09273 1.31512 1.38051 1.26940 0.95596 1.04463 0.90322 0.85404 0.79058 0.75554 0.80125 1.17084 1.20682 1.17381 1.19451 0.92559 0.94863 1.44973 0.93822 1.17733 0.92685 0.92430 0.90864 1.21434 0.96911 1.02554 1.03393 1.20985 0.92222 0.98135 0.98533 1.22415 1.02318 0.96368 1.00795 1.19555 0.92854 0.97774 1.01102 1.18352 0.80831 0.82563 0.81443 1.90693 1.74420 1.51270 1.30426 1.48354 1.13438 1.31098 1.40877 1.22524 0.89935 0.89837 1.00678 1.22804 0.93749 1.01383 0.97571 1.22794 0.92015 1.01523 0.98622 1.21272 0.92855 0.96989 0.83636 0.86700 1.20488 0.95351 0.93534 0.95448 1.22256 1.00782 0.99222 0.94921 1.23093 0.92153 0.95689 0.95708 1.67606 1.19255 1.00985 1.34525 1.22767 0.96264 0.96876 0.91393 1.21764 0.99632 0.99522 0.97804 1.21106 0.92989 1.02055 1.02893 0.89541 0.87702 0.83494 0.80481 0.91127 0.91611 0.86906 0.89450 0.89663 0.86039 0.80953 0.80716 0.83084 0.86464 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -49.23 13.93 21.83 0.30 -48.92 16 2 C 0.04 2.21 5.47 85.26 0.47 2.68 16 3 Si 0.98 43.11 24.38 68.60 1.67 44.78 16 4 H -0.25 -9.83 6.52 99.48 0.65 -9.18 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.25 -11.11 6.77 99.48 0.67 -10.44 16 7 C -0.49 -29.24 9.61 23.47 0.23 -29.02 16 8 H 0.04 2.88 8.06 -2.91 -0.02 2.86 16 9 C 0.07 3.49 5.16 -21.32 -0.11 3.38 16 10 C -0.22 -10.23 7.05 22.77 0.16 -10.07 16 11 C -0.08 -2.90 9.29 22.18 0.21 -2.69 16 12 C -0.20 -6.79 6.16 22.70 0.14 -6.65 16 13 C -0.11 -4.65 5.38 -20.14 -0.11 -4.76 16 14 C 0.58 22.60 7.34 86.80 0.64 23.24 16 15 O -0.59 -27.82 16.67 -3.88 -0.06 -27.89 16 16 N -0.61 -16.21 2.26 -795.53 -1.80 -18.01 16 17 C 0.09 1.85 6.94 86.86 0.60 2.45 16 18 C -0.12 -1.18 7.09 31.99 0.23 -0.96 16 19 C -0.11 -1.07 6.47 31.78 0.21 -0.86 16 20 C 0.16 2.82 2.45 44.59 0.11 2.93 16 21 H 0.12 1.83 6.30 -2.39 -0.02 1.81 16 22 C -0.04 -0.84 2.30 -19.67 -0.05 -0.89 16 23 C -0.15 -2.83 6.80 22.36 0.15 -2.68 16 24 C 0.09 2.03 11.18 84.68 0.95 2.97 16 25 N -0.51 -14.99 10.36 -195.85 -2.03 -17.02 16 26 C 0.08 2.39 11.18 84.68 0.95 3.33 16 27 C -0.17 -4.43 8.87 22.36 0.20 -4.23 16 28 C -0.17 -8.81 9.33 23.01 0.21 -8.60 16 29 H 0.29 15.06 8.30 -92.71 -0.77 14.29 16 30 H 0.11 4.74 4.15 -2.91 -0.01 4.73 16 31 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 32 H 0.18 4.33 1.61 -2.92 0.00 4.33 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.54 7.98 -2.39 -0.02 1.52 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.82 7.84 -2.38 -0.02 0.80 16 38 H 0.12 0.46 8.14 -2.38 -0.02 0.45 16 39 H 0.17 1.81 7.87 -2.91 -0.02 1.78 16 40 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.12 3.20 7.61 -2.91 -0.02 3.18 16 43 H 0.08 4.52 7.72 -2.91 -0.02 4.50 16 Total: -1.00 -78.55 340.26 4.21 -74.34 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: 0.95 Total: 23.12 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 5.18 Total: -30.41 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -3.53 Total: -83.96 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.06 Total: -27.89 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.67 Total: 44.78 kcal Total: -78.55 4.21 -74.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045078613.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.410 kcal (2) G-P(sol) polarization free energy of solvation -78.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds