Wall clock time and date at job start Tue Mar 31 2020 13:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47260 * 239.99663 * 3 2 1 5 5 H 1.48501 * 109.47323 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47218 * 119.99777 * 3 2 1 7 7 C 1.37885 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99829 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.47070 * 180.02562 * 9 7 2 11 11 C 1.34771 * 120.00018 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99924 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00028 * 179.97438 * 11 10 9 14 14 N 1.46898 * 109.47409 * 174.04238 * 13 11 10 15 15 C 1.46392 * 110.99823 * 296.98791 * 14 13 11 16 16 C 1.50464 * 110.69599 * 178.38559 * 15 14 13 17 17 C 1.37715 * 121.44068 * 145.89128 * 16 15 14 18 18 C 1.38440 * 119.87135 * 179.43201 * 17 16 15 19 19 C 1.38345 * 120.51352 * 0.04151 * 18 17 16 20 20 C 1.38226 * 120.14009 * 0.07749 * 19 18 17 21 21 C 1.38755 * 119.46198 * 359.97438 * 20 19 18 22 22 C 1.48156 * 122.12735 * 179.79545 * 21 20 19 23 23 C 1.38796 * 121.44457 * 17.61281 * 22 21 20 24 24 C 1.38183 * 119.68484 * 178.89880 * 23 22 21 25 25 C 1.38408 * 120.15015 * 359.97438 * 24 23 22 26 26 C 1.38125 * 120.58086 * 0.24918 * 25 24 23 27 27 C 1.38815 * 120.03546 * 359.97438 * 26 25 24 28 28 H 0.96994 * 120.00652 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.46895 * 60.00148 * 9 7 2 30 30 H 1.08999 * 109.47100 * 299.99996 * 9 7 2 31 31 H 0.97000 * 119.99701 * 359.97438 * 10 9 7 32 32 H 1.08998 * 109.47251 * 54.04143 * 13 11 10 33 33 H 1.09007 * 109.46989 * 294.04007 * 13 11 10 34 34 H 1.08998 * 109.23313 * 58.06956 * 15 14 13 35 35 H 1.08999 * 109.23034 * 298.70231 * 15 14 13 36 36 H 1.07999 * 120.06251 * 359.40907 * 17 16 15 37 37 H 1.08003 * 119.73860 * 180.02562 * 18 17 16 38 38 H 1.08008 * 119.92602 * 180.08930 * 19 18 17 39 39 H 1.07998 * 120.26603 * 179.97438 * 20 19 18 40 40 H 1.07995 * 120.15817 * 358.88927 * 23 22 21 41 41 H 1.08005 * 119.92114 * 180.02562 * 24 23 22 42 42 H 1.08005 * 119.71102 * 180.52446 * 25 24 23 43 43 H 1.08006 * 119.98279 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0018 11 6 1.7539 -4.8833 0.0025 12 8 0.5615 -5.1050 0.0017 13 6 2.7332 -6.0288 0.0032 14 7 2.0045 -7.2961 0.1477 15 6 1.3040 -7.3549 1.4318 16 6 0.5284 -8.6383 1.5561 17 6 0.3745 -9.2699 2.7701 18 6 -0.3558 -10.4434 2.8491 19 6 -0.9332 -10.9890 1.7165 20 6 -0.7836 -10.3654 0.4920 21 6 -0.0512 -9.1897 0.4099 22 6 0.1502 -8.4749 -0.8721 23 6 -0.6565 -8.7230 -1.9739 24 6 -0.4509 -8.0188 -3.1450 25 6 0.5543 -7.0703 -3.2185 26 6 1.3651 -6.8197 -2.1286 27 6 1.1757 -7.5212 -0.9458 28 1 -0.4851 0.8399 -0.0004 29 1 0.6248 -2.5571 -0.8896 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0021 32 1 3.4279 -5.9123 0.8349 33 1 3.2875 -6.0334 -0.9354 34 1 0.6172 -6.5117 1.5052 35 1 2.0319 -7.2955 2.2409 36 1 0.8230 -8.8509 3.6587 37 1 -0.4754 -10.9368 3.8024 38 1 -1.5022 -11.9042 1.7893 39 1 -1.2331 -10.7898 -0.3935 40 1 -1.4410 -9.4629 -1.9164 41 1 -1.0767 -8.2085 -4.0046 42 1 0.7033 -6.5180 -4.1346 43 1 2.1464 -6.0771 -2.1965 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053107800.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:59 Heat of formation + Delta-G solvation = 28.825101 kcal Electronic energy + Delta-G solvation = -26554.129676 eV Core-core repulsion = 22949.886863 eV Total energy + Delta-G solvation = -3604.242813 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.14612 -39.11381 -38.06663 -36.28143 -34.22586 -32.87252 -32.41089 -31.84975 -29.93003 -28.98741 -28.38217 -26.62556 -24.62231 -23.60322 -22.85379 -22.13955 -20.97916 -20.00034 -19.53134 -17.90424 -17.41910 -16.23882 -16.09861 -15.94225 -15.57097 -15.11412 -15.02753 -14.74261 -14.45134 -14.16166 -13.83365 -13.70262 -13.33805 -13.31642 -13.02738 -12.78613 -12.43694 -12.25154 -12.09441 -11.98499 -11.71028 -11.49474 -11.40580 -11.04989 -10.91794 -10.83054 -10.57778 -10.38877 -10.22319 -9.56764 -9.47702 -9.21230 -8.83691 -8.75609 -8.22957 -7.97559 -7.28412 -6.21389 -4.29182 0.80828 1.33180 1.61731 2.00709 3.16198 3.21612 3.26725 3.27986 3.46538 3.88335 3.93796 4.19237 4.31663 4.62880 4.67563 4.78604 4.84293 4.98555 5.14483 5.17658 5.18968 5.28800 5.33832 5.36420 5.41807 5.45029 5.52622 5.61062 5.75308 5.80853 5.92671 6.01299 6.06299 6.26749 6.33211 6.43684 6.47228 6.62975 6.70840 6.85054 6.92594 7.07725 7.22114 7.31726 7.36296 7.44291 7.58410 7.90782 8.49679 8.68966 8.96028 9.37460 10.88568 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.017507 B = 0.003191 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.967048 B = 8771.246046 C = 9569.873735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.063 0.937 9 C 0.251 3.749 10 N -0.707 5.707 11 C 0.465 3.535 12 O -0.541 6.541 13 C 0.026 3.974 14 N -0.472 5.472 15 C 0.088 3.912 16 C -0.074 4.074 17 C -0.109 4.109 18 C -0.124 4.124 19 C -0.121 4.121 20 C -0.111 4.111 21 C -0.023 4.023 22 C -0.091 4.091 23 C -0.078 4.078 24 C -0.156 4.156 25 C -0.082 4.082 26 C -0.155 4.155 27 C 0.164 3.836 28 H 0.267 0.733 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.391 0.609 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.014 -20.165 0.327 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.584 4.584 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.356 5.356 11 C 0.248 3.752 12 O -0.420 6.420 13 C -0.104 4.104 14 N -0.183 5.183 15 C -0.037 4.037 16 C -0.075 4.075 17 C -0.127 4.127 18 C -0.142 4.142 19 C -0.139 4.139 20 C -0.129 4.129 21 C -0.023 4.023 22 C -0.094 4.094 23 C -0.097 4.097 24 C -0.175 4.175 25 C -0.101 4.101 26 C -0.176 4.176 27 C 0.065 3.935 28 H 0.077 0.923 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.224 0.776 32 H 0.127 0.873 33 H 0.130 0.870 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.142 0.858 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 2.365 -20.498 0.432 20.639 hybrid contribution 0.402 1.698 0.001 1.746 sum 2.768 -18.800 0.433 19.007 Atomic orbital electron populations 1.69957 1.06133 1.27503 1.48590 1.24953 0.94908 0.99479 0.94614 0.86474 0.79429 0.82289 0.78720 1.20029 1.21038 1.20034 1.21176 0.93208 0.90435 1.53605 0.91929 1.19097 0.88244 0.81916 0.97701 1.46522 1.11220 1.06135 1.71682 1.21303 0.90251 0.85249 0.78398 1.90706 1.16507 1.84332 1.50425 1.22469 0.96639 0.85648 1.05667 1.58017 1.28136 1.30014 1.02150 1.21041 0.97176 0.96215 0.89255 1.19861 0.98125 0.96132 0.93332 1.20762 0.99731 0.95578 0.96668 1.21100 0.98446 0.96221 0.98452 1.21070 1.00228 1.00009 0.92577 1.20953 0.99042 0.94980 0.97950 1.18520 0.96985 0.94667 0.92127 1.18213 0.97775 0.99684 0.93684 1.20804 0.97925 0.98897 0.92064 1.20901 0.99825 0.98834 0.97973 1.20969 0.94563 0.96601 0.97925 1.20922 1.02645 1.00799 0.93232 1.18624 0.90355 0.93518 0.91046 0.92333 0.95523 0.95630 0.77611 0.87281 0.86958 0.89440 0.89184 0.85785 0.86107 0.86055 0.85808 0.86048 0.86219 0.86136 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.25 6.48 5.43 -5.19 -0.03 6.45 16 10 N -0.71 -14.00 5.55 -61.48 -0.34 -14.34 16 11 C 0.47 8.64 6.17 -10.99 -0.07 8.57 16 12 O -0.54 -12.27 12.58 5.56 0.07 -12.20 16 13 C 0.03 0.35 5.34 -4.98 -0.03 0.33 16 14 N -0.47 -7.12 4.73 -174.20 -0.82 -7.94 16 15 C 0.09 1.32 5.14 -5.37 -0.03 1.29 16 16 C -0.07 -1.07 5.79 -104.35 -0.60 -1.68 16 17 C -0.11 -1.31 9.75 -39.70 -0.39 -1.69 16 18 C -0.12 -1.31 10.03 -39.47 -0.40 -1.71 16 19 C -0.12 -1.28 10.04 -39.55 -0.40 -1.68 16 20 C -0.11 -1.36 9.49 -39.39 -0.37 -1.73 16 21 C -0.02 -0.34 5.81 -105.06 -0.61 -0.95 16 22 C -0.09 -1.45 5.78 -104.87 -0.61 -2.05 16 23 C -0.08 -1.10 9.48 -39.39 -0.37 -1.47 16 24 C -0.16 -2.11 10.04 -39.54 -0.40 -2.51 16 25 C -0.08 -1.19 10.02 -39.56 -0.40 -1.58 16 26 C -0.16 -2.46 7.85 -39.41 -0.31 -2.77 16 27 C 0.16 2.69 4.55 -83.63 -0.38 2.31 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.39 6.51 8.32 -40.82 -0.34 6.17 16 32 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.11 1.32 6.34 -51.93 -0.33 0.99 16 34 H 0.09 1.59 5.76 -51.93 -0.30 1.29 16 35 H 0.09 1.11 8.08 -51.93 -0.42 0.69 16 36 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 39 H 0.12 1.25 6.88 -52.49 -0.36 0.89 16 40 H 0.12 1.37 6.85 -52.49 -0.36 1.01 16 41 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 42 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 43 H 0.12 1.82 5.47 -52.48 -0.29 1.53 16 LS Contribution 350.79 15.07 5.29 5.29 Total: -1.00 -33.14 350.79 -11.20 -44.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -5.31 Total: 8.42 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -5.80 Total: -14.00 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.43 Total: -47.39 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.07 Total: -12.20 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.14 -11.20 -44.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053107800.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.167 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds