Wall clock time and date at job start Tue Mar 31 2020 13:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47489 * 9.53426 * 3 2 1 5 5 N 1.46496 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00214 * 269.99844 * 5 4 3 7 7 C 1.50699 * 109.47231 * 270.00663 * 6 5 4 8 8 H 1.08002 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99884 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00208 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00079 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46915 * 90.00051 * 11 9 7 13 13 H 1.48499 * 109.47085 * 210.00129 * 11 9 7 14 14 H 1.48503 * 109.47192 * 330.00016 * 11 9 7 15 15 C 1.34777 * 120.00197 * 90.00449 * 5 4 3 16 16 O 1.21276 * 120.00179 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99596 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46618 * 180.02562 * 17 15 5 19 19 C 1.36133 * 120.17435 * 264.97492 * 18 17 15 20 20 C 1.39326 * 120.98585 * 180.02562 * 19 18 17 21 21 C 1.36126 * 120.99691 * 359.92630 * 20 19 18 22 22 C 1.40505 * 119.65059 * 0.05133 * 21 20 19 23 23 C 1.40550 * 121.29530 * 179.97438 * 22 21 20 24 24 C 1.36094 * 119.64902 * 180.02562 * 23 22 21 25 25 C 1.39379 * 120.99615 * 359.95635 * 24 23 22 26 26 C 1.36087 * 120.99503 * 0.04364 * 25 24 23 27 27 C 1.40506 * 120.17650 * 85.00517 * 18 17 15 28 28 H 1.08999 * 109.46959 * 249.53541 * 3 2 1 29 29 H 1.08999 * 109.46900 * 129.53518 * 3 2 1 30 30 H 1.08999 * 109.46927 * 60.00095 * 4 3 2 31 31 H 1.08999 * 109.47124 * 299.99954 * 4 3 2 32 32 H 1.09011 * 109.46323 * 29.99951 * 6 5 4 33 33 H 1.08995 * 109.47334 * 149.99898 * 6 5 4 34 34 H 0.96995 * 120.00115 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47393 * 60.00736 * 17 15 5 36 36 H 1.09000 * 109.47287 * 300.00187 * 17 15 5 37 37 H 1.08001 * 119.50260 * 0.04987 * 19 18 17 38 38 H 1.08006 * 119.50203 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.17198 * 180.32175 * 21 20 19 40 40 H 1.07996 * 120.17506 * 0.02601 * 23 22 21 41 41 H 1.07998 * 119.49685 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.49899 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.17239 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4216 -0.2389 5 7 4.5837 -1.4208 -0.2395 6 6 5.3156 -1.2104 -1.4911 7 6 5.5671 -2.5395 -2.1554 8 1 5.2172 -3.4499 -1.6915 9 6 6.2440 -2.5933 -3.3553 10 7 6.4640 -3.7532 -3.9349 11 14 6.8486 -1.0186 -4.1580 12 1 8.2220 -0.7158 -3.6812 13 1 6.8630 -1.1888 -5.6331 14 1 5.9415 0.1006 -3.7977 15 6 5.2582 -1.6137 0.9113 16 8 6.4709 -1.6125 0.9109 17 6 4.5052 -1.8296 2.1988 18 6 5.4852 -2.0182 3.3281 19 6 5.8524 -3.2712 3.7133 20 6 6.7565 -3.4651 4.7555 21 6 7.3002 -2.4074 5.4178 22 6 6.9456 -1.0990 5.0481 23 6 7.4855 0.0180 5.7087 24 6 7.1181 1.2705 5.3234 25 6 6.2135 1.4644 4.2809 26 6 5.6704 0.4069 3.6185 27 6 6.0242 -0.9017 3.9893 28 1 2.9711 0.3601 0.9628 29 1 2.9710 0.6550 -0.7926 30 1 2.7556 -1.7811 -1.2017 31 1 2.7557 -2.0759 0.5537 32 1 4.7257 -0.5783 -2.1550 33 1 6.2678 -0.7247 -1.2779 34 1 6.9405 -3.7910 -4.7789 35 1 3.8788 -2.7170 2.1089 36 1 3.8785 -0.9615 2.4032 37 1 5.4368 -4.1276 3.2032 38 1 7.0308 -4.4698 5.0416 39 1 8.0038 -2.5730 6.2203 40 1 8.1880 -0.1170 6.5177 41 1 7.5341 2.1270 5.8329 42 1 5.9392 2.4691 3.9948 43 1 4.9710 0.5726 2.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057027320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:57 Heat of formation + Delta-G solvation = 36.278170 kcal Electronic energy + Delta-G solvation = -26260.687297 eV Core-core repulsion = 22656.767673 eV Total energy + Delta-G solvation = -3603.919623 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.60523 -39.19772 -36.97344 -36.47311 -35.34293 -33.75136 -32.76233 -31.04708 -30.31388 -30.20978 -28.51391 -26.85129 -24.09333 -23.36950 -22.93638 -22.57081 -20.76724 -18.53122 -17.79782 -17.50668 -16.99726 -16.85991 -16.57131 -16.21482 -15.59196 -14.97965 -14.71233 -14.41589 -14.20795 -13.88515 -13.81582 -13.54376 -13.35925 -13.28848 -12.95757 -12.69266 -12.56681 -12.51975 -12.32719 -12.07810 -11.85904 -11.66339 -11.59258 -11.26955 -11.10295 -10.94751 -10.82320 -10.72859 -10.55824 -10.22893 -9.84255 -9.60586 -9.13069 -8.63435 -8.53661 -7.93056 -7.78211 -6.13068 -4.12609 0.57066 1.09114 2.08899 2.65114 2.73656 3.03197 3.21032 3.25409 3.30649 3.33705 3.54088 4.04887 4.25012 4.35117 4.52199 4.77809 4.84307 4.87852 4.91558 4.99414 5.03009 5.12041 5.16886 5.19221 5.24705 5.37181 5.41143 5.41594 5.55630 5.56914 5.70556 5.79172 5.98504 6.01030 6.14437 6.25664 6.28649 6.46013 6.56263 6.59306 6.70109 6.84479 6.87857 7.06743 7.17761 7.49786 7.54683 8.05829 8.40601 8.82393 8.91118 9.46601 11.00228 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.004185 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.014582 B = 6689.328779 C = 7871.434962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C 0.215 3.785 3 C -0.051 4.051 4 C 0.116 3.884 5 N -0.594 5.594 6 C 0.215 3.785 7 C -0.531 4.531 8 H 0.075 0.925 9 C 0.074 3.926 10 N -0.896 5.896 11 Si 0.874 3.126 12 H -0.274 1.274 13 H -0.285 1.285 14 H -0.265 1.265 15 C 0.511 3.489 16 O -0.518 6.518 17 C -0.110 4.110 18 C -0.043 4.043 19 C -0.106 4.106 20 C -0.108 4.108 21 C -0.115 4.115 22 C -0.051 4.051 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.098 4.098 27 C -0.034 4.034 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.841 7.861 18.326 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.326 5.326 6 C 0.095 3.905 7 C -0.569 4.569 8 H 0.093 0.907 9 C -0.129 4.129 10 N -0.534 5.534 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.211 1.211 14 H -0.190 1.190 15 C 0.298 3.702 16 O -0.393 6.393 17 C -0.150 4.150 18 C -0.043 4.043 19 C -0.124 4.124 20 C -0.126 4.126 21 C -0.133 4.133 22 C -0.051 4.051 23 C -0.126 4.126 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.116 4.116 27 C -0.034 4.034 28 H 0.124 0.876 29 H 0.134 0.866 30 H 0.115 0.885 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.776 7.776 18.132 20.087 hybrid contribution 0.855 0.640 -0.716 1.286 sum -2.920 8.416 17.417 19.563 Atomic orbital electron populations 1.81222 1.13001 1.08498 1.09142 1.29038 0.95039 0.93239 0.92961 1.19902 0.81541 1.01972 1.05862 1.21346 0.81825 0.93061 1.04806 1.47889 1.04867 1.70866 1.08950 1.19718 0.92516 0.97971 0.80298 1.21301 1.37269 0.92717 1.05654 0.90670 1.24851 0.95194 0.96031 0.96829 1.69888 1.41277 1.24201 1.18031 0.86884 0.80176 0.84028 0.78783 1.19924 1.21106 1.18978 1.20179 0.88143 0.77625 0.84298 1.90729 1.13647 1.49020 1.85937 1.20852 0.97738 1.04576 0.91859 1.19157 0.97286 0.92849 0.95053 1.20731 0.97906 0.96744 0.97001 1.20796 0.96923 0.99013 0.95900 1.20952 1.00261 0.91630 1.00412 1.18034 0.97105 0.93858 0.96063 1.20976 0.99792 0.92113 0.99756 1.20797 0.98234 0.97113 0.97657 1.20802 0.97756 0.98926 0.96460 1.21014 0.99886 0.91713 0.98984 1.17843 0.96763 0.93282 0.95488 0.87633 0.86626 0.88452 0.90202 0.95021 0.94305 0.92516 0.87889 0.88414 0.85877 0.86002 0.85858 0.85870 0.86295 0.86177 0.85907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.15 18.54 42.15 0.78 -5.37 16 2 C 0.22 2.39 15.43 -20.76 -0.32 2.07 16 3 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 4 C 0.12 1.42 5.17 -4.05 -0.02 1.40 16 5 N -0.59 -10.21 2.46 -175.06 -0.43 -10.64 16 6 C 0.22 4.69 4.23 -5.19 -0.02 4.67 16 7 C -0.53 -14.28 9.94 -34.44 -0.34 -14.62 16 8 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 9 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 10 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 11 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 14 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 15 C 0.51 9.00 7.67 -10.98 -0.08 8.91 16 16 O -0.52 -11.76 15.61 5.56 0.09 -11.68 16 17 C -0.11 -1.40 3.78 -29.03 -0.11 -1.51 16 18 C -0.04 -0.61 4.38 -104.52 -0.46 -1.06 16 19 C -0.11 -1.42 9.57 -39.93 -0.38 -1.81 16 20 C -0.11 -1.31 9.95 -39.94 -0.40 -1.70 16 21 C -0.11 -1.36 9.77 -39.49 -0.39 -1.75 16 22 C -0.05 -0.67 5.74 -106.83 -0.61 -1.28 16 23 C -0.11 -1.21 9.77 -39.48 -0.39 -1.59 16 24 C -0.12 -1.26 9.95 -39.93 -0.40 -1.65 16 25 C -0.12 -1.34 9.95 -39.93 -0.40 -1.74 16 26 C -0.10 -1.23 9.28 -39.49 -0.37 -1.60 16 27 C -0.03 -0.47 5.74 -106.83 -0.61 -1.09 16 28 H 0.11 0.73 7.22 -51.93 -0.37 0.36 16 29 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 31 H 0.08 0.81 6.44 -51.93 -0.33 0.47 16 32 H 0.03 0.64 7.13 -51.92 -0.37 0.27 16 33 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.11 7.30 -51.93 -0.38 0.73 16 36 H 0.10 0.93 5.75 -51.93 -0.30 0.63 16 37 H 0.12 1.50 8.05 -52.49 -0.42 1.08 16 38 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 43 H 0.12 1.34 6.49 -52.49 -0.34 1.00 16 LS Contribution 368.68 15.07 5.56 5.56 Total: -1.00 -35.50 368.68 -8.89 -44.39 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -5.42 Total: 0.84 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -5.57 Total: -13.03 kcal Atomic # 7 Polarization: -43.17 SS G_CDS: 1.13 Total: -42.04 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.09 Total: -11.68 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.50 -8.89 -44.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.673 kcal (2) G-P(sol) polarization free energy of solvation -35.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds