Wall clock time and date at job start Tue Mar 31 2020 13:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.52994 * 109.47489 * 9.53426 * 3 2 1 5 5 N 1.46496 * 109.47258 * 179.97438 * 4 3 2 6 6 C 1.46503 * 120.00214 * 269.99844 * 5 4 3 7 7 C 1.50699 * 109.47231 * 270.00663 * 6 5 4 8 8 H 1.08002 * 119.99983 * 359.97438 * 7 6 5 9 9 C 1.37875 * 119.99884 * 179.97438 * 7 6 5 10 10 N 1.31516 * 120.00208 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 120.00079 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46915 * 90.00051 * 11 9 7 13 13 H 1.48499 * 109.47085 * 210.00129 * 11 9 7 14 14 H 1.48503 * 109.47192 * 330.00016 * 11 9 7 15 15 C 1.34777 * 120.00197 * 90.00449 * 5 4 3 16 16 O 1.21276 * 120.00179 * 180.02562 * 15 5 4 17 17 C 1.50704 * 119.99596 * 359.97438 * 15 5 4 18 18 C 1.50703 * 109.46618 * 180.02562 * 17 15 5 19 19 C 1.36133 * 120.17435 * 264.97492 * 18 17 15 20 20 C 1.39326 * 120.98585 * 180.02562 * 19 18 17 21 21 C 1.36126 * 120.99691 * 359.92630 * 20 19 18 22 22 C 1.40505 * 119.65059 * 0.05133 * 21 20 19 23 23 C 1.40550 * 121.29530 * 179.97438 * 22 21 20 24 24 C 1.36094 * 119.64902 * 180.02562 * 23 22 21 25 25 C 1.39379 * 120.99615 * 359.95635 * 24 23 22 26 26 C 1.36087 * 120.99503 * 0.04364 * 25 24 23 27 27 C 1.40506 * 120.17650 * 85.00517 * 18 17 15 28 28 H 1.08999 * 109.46959 * 249.53541 * 3 2 1 29 29 H 1.08999 * 109.46900 * 129.53518 * 3 2 1 30 30 H 1.08999 * 109.46927 * 60.00095 * 4 3 2 31 31 H 1.08999 * 109.47124 * 299.99954 * 4 3 2 32 32 H 1.09011 * 109.46323 * 29.99951 * 6 5 4 33 33 H 1.08995 * 109.47334 * 149.99898 * 6 5 4 34 34 H 0.96995 * 120.00115 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47393 * 60.00736 * 17 15 5 36 36 H 1.09000 * 109.47287 * 300.00187 * 17 15 5 37 37 H 1.08001 * 119.50260 * 0.04987 * 19 18 17 38 38 H 1.08006 * 119.50203 * 179.97438 * 20 19 18 39 39 H 1.07998 * 120.17198 * 180.32175 * 21 20 19 40 40 H 1.07996 * 120.17506 * 0.02601 * 23 22 21 41 41 H 1.07998 * 119.49685 * 179.97438 * 24 23 22 42 42 H 1.08005 * 119.49899 * 180.02562 * 25 24 23 43 43 H 1.07997 * 120.17239 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1187 -1.4216 -0.2389 5 7 4.5837 -1.4208 -0.2395 6 6 5.3156 -1.2104 -1.4911 7 6 5.5671 -2.5395 -2.1554 8 1 5.2172 -3.4499 -1.6915 9 6 6.2440 -2.5933 -3.3553 10 7 6.4640 -3.7532 -3.9349 11 14 6.8486 -1.0186 -4.1580 12 1 8.2220 -0.7158 -3.6812 13 1 6.8630 -1.1888 -5.6331 14 1 5.9415 0.1006 -3.7977 15 6 5.2582 -1.6137 0.9113 16 8 6.4709 -1.6125 0.9109 17 6 4.5052 -1.8296 2.1988 18 6 5.4852 -2.0182 3.3281 19 6 5.8524 -3.2712 3.7133 20 6 6.7565 -3.4651 4.7555 21 6 7.3002 -2.4074 5.4178 22 6 6.9456 -1.0990 5.0481 23 6 7.4855 0.0180 5.7087 24 6 7.1181 1.2705 5.3234 25 6 6.2135 1.4644 4.2809 26 6 5.6704 0.4069 3.6185 27 6 6.0242 -0.9017 3.9893 28 1 2.9711 0.3601 0.9628 29 1 2.9710 0.6550 -0.7926 30 1 2.7556 -1.7811 -1.2017 31 1 2.7557 -2.0759 0.5537 32 1 4.7257 -0.5783 -2.1550 33 1 6.2678 -0.7247 -1.2779 34 1 6.9405 -3.7910 -4.7789 35 1 3.8788 -2.7170 2.1089 36 1 3.8785 -0.9615 2.4032 37 1 5.4368 -4.1276 3.2032 38 1 7.0308 -4.4698 5.0416 39 1 8.0038 -2.5730 6.2203 40 1 8.1880 -0.1170 6.5177 41 1 7.5341 2.1270 5.8329 42 1 5.9392 2.4691 3.9948 43 1 4.9710 0.5726 2.8124 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057027320.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:57 Heat of formation + Delta-G solvation = 15.955513 kcal Electronic energy + Delta-G solvation = -26261.568553 eV Core-core repulsion = 22656.767673 eV Total energy + Delta-G solvation = -3604.800880 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58342 -40.44133 -37.99679 -37.35582 -36.66596 -34.95821 -34.49525 -32.32640 -31.26972 -31.09654 -29.92304 -28.12431 -25.21307 -24.52800 -23.96315 -23.81489 -21.83002 -19.82002 -19.16260 -18.48241 -18.36116 -18.01435 -17.69084 -17.20598 -16.87665 -16.22186 -15.84738 -15.71156 -15.19203 -15.06666 -14.89873 -14.63139 -14.43311 -14.31351 -14.19701 -13.99457 -13.74101 -13.53378 -13.51740 -13.32320 -13.07913 -12.74740 -12.70456 -12.64093 -12.38174 -12.13624 -11.96974 -11.86716 -11.70726 -11.67977 -11.56266 -10.85514 -10.76636 -10.48338 -9.44333 -9.42360 -8.67553 -8.27525 -6.31714 -0.31307 0.19418 1.17988 1.37909 1.42274 1.49270 1.70712 1.87349 1.88574 2.14162 2.36007 2.37398 3.07317 3.14295 3.31097 3.60360 3.89040 3.91324 3.98399 4.09989 4.12347 4.13685 4.21554 4.35016 4.39953 4.52427 4.56374 4.60182 4.70169 4.71848 4.83262 4.89206 4.93195 5.05454 5.12054 5.13885 5.30213 5.40232 5.42968 5.53906 5.59445 5.65671 5.70187 5.79271 6.00983 6.21168 6.30267 6.63295 6.70737 6.72722 7.28936 7.49085 8.89449 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.010005 B = 0.004185 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.014582 B = 6689.328779 C = 7871.434962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.245 3.755 3 C -0.038 4.038 4 C 0.109 3.891 5 N -0.595 5.595 6 C 0.223 3.777 7 C -0.531 4.531 8 H 0.029 0.971 9 C 0.009 3.991 10 N -0.950 5.950 11 Si 0.942 3.058 12 H -0.281 1.281 13 H -0.283 1.283 14 H -0.226 1.226 15 C 0.509 3.491 16 O -0.578 6.578 17 C -0.099 4.099 18 C -0.065 4.065 19 C -0.126 4.126 20 C -0.124 4.124 21 C -0.117 4.117 22 C -0.077 4.077 23 C -0.116 4.116 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.057 4.057 28 H 0.139 0.861 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.265 0.735 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.125 0.875 38 H 0.142 0.858 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.145 0.855 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.341 10.814 19.790 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.072 4.072 3 C -0.079 4.079 4 C -0.015 4.015 5 N -0.325 5.325 6 C 0.101 3.899 7 C -0.570 4.570 8 H 0.048 0.952 9 C -0.189 4.189 10 N -0.590 5.590 11 Si 0.765 3.235 12 H -0.207 1.207 13 H -0.209 1.209 14 H -0.148 1.148 15 C 0.298 3.702 16 O -0.457 6.457 17 C -0.138 4.138 18 C -0.065 4.065 19 C -0.144 4.144 20 C -0.142 4.142 21 C -0.134 4.134 22 C -0.077 4.077 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.057 4.057 28 H 0.156 0.844 29 H 0.147 0.853 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.165 0.835 42 H 0.163 0.837 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.348 10.743 19.623 22.790 hybrid contribution 1.052 -0.357 -1.081 1.550 sum -3.295 10.386 18.542 21.506 Atomic orbital electron populations 1.81270 1.14584 1.10001 1.11042 1.29174 0.94992 0.91742 0.91317 1.19875 0.79975 0.99851 1.08243 1.21568 0.78797 0.95860 1.05303 1.47841 1.06735 1.70517 1.07444 1.19389 0.93074 0.95095 0.82365 1.21634 1.36223 0.93635 1.05531 0.95219 1.25840 0.95547 0.99712 0.97768 1.70061 1.43072 1.27078 1.18833 0.85801 0.79686 0.80565 0.77434 1.20686 1.20901 1.14813 1.21001 0.87692 0.75904 0.85595 1.90698 1.16437 1.51595 1.86938 1.20853 0.97409 1.07000 0.88521 1.19367 0.98229 0.93201 0.95739 1.20992 0.98611 0.96974 0.97788 1.21076 0.96944 1.00297 0.95843 1.21310 1.00173 0.91244 1.00711 1.18434 0.97606 0.95094 0.96553 1.21314 1.00001 0.91886 1.00188 1.21202 0.97711 0.97871 0.97412 1.21195 0.97053 0.99778 0.95968 1.21254 1.00994 0.91559 0.99972 1.18149 0.97397 0.94018 0.96101 0.84352 0.85281 0.89732 0.87766 0.92162 0.95956 0.92581 0.86020 0.84726 0.85711 0.84049 0.83326 0.83533 0.83471 0.83687 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.76 18.54 20.01 0.37 -12.39 16 2 C 0.25 4.72 15.43 89.44 1.38 6.10 16 3 C -0.04 -0.56 6.03 28.79 0.17 -0.38 16 4 C 0.11 2.42 5.17 86.38 0.45 2.86 16 5 N -0.59 -19.65 2.46 -826.16 -2.03 -21.68 16 6 C 0.22 9.50 4.23 85.63 0.36 9.86 16 7 C -0.53 -29.27 9.94 25.60 0.25 -29.01 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 9 C 0.01 0.50 5.47 84.65 0.46 0.96 16 10 N -0.95 -58.95 13.96 21.45 0.30 -58.65 16 11 Si 0.94 42.34 27.47 68.60 1.88 44.22 16 12 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 15 C 0.51 17.56 7.67 87.66 0.67 18.24 16 16 O -0.58 -26.69 15.61 -3.02 -0.05 -26.73 16 17 C -0.10 -2.33 3.78 29.10 0.11 -2.22 16 18 C -0.06 -1.80 4.38 -19.80 -0.09 -1.88 16 19 C -0.13 -3.42 9.57 22.04 0.21 -3.21 16 20 C -0.12 -2.97 9.95 22.04 0.22 -2.75 16 21 C -0.12 -2.67 9.77 22.33 0.22 -2.45 16 22 C -0.08 -1.95 5.74 -21.30 -0.12 -2.08 16 23 C -0.12 -2.35 9.77 22.33 0.22 -2.13 16 24 C -0.12 -2.26 9.95 22.05 0.22 -2.04 16 25 C -0.12 -2.37 9.95 22.04 0.22 -2.15 16 26 C -0.12 -2.78 9.28 22.33 0.21 -2.58 16 27 C -0.06 -1.54 5.74 -21.30 -0.12 -1.67 16 28 H 0.14 1.20 7.22 -2.39 -0.02 1.18 16 29 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.08 2.13 8.07 -2.39 -0.02 2.11 16 31 H 0.10 1.81 6.44 -2.39 -0.02 1.79 16 32 H 0.06 2.24 7.13 -2.38 -0.02 2.23 16 33 H 0.02 1.04 6.85 -2.39 -0.02 1.03 16 34 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.12 2.39 7.30 -2.39 -0.02 2.37 16 36 H 0.13 2.09 5.75 -2.39 -0.01 2.08 16 37 H 0.12 3.14 8.05 -2.91 -0.02 3.12 16 38 H 0.14 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 2.58 6.49 -2.91 -0.02 2.56 16 Total: -1.00 -82.84 368.68 6.50 -76.34 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.98 Total: 15.42 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 5.04 Total: -16.53 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -1.36 Total: -92.72 kcal Atomic # 8 Polarization: -26.69 SS G_CDS: -0.05 Total: -26.73 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -82.84 6.50 -76.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057027320.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.297 kcal (2) G-P(sol) polarization free energy of solvation -82.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds