Wall clock time and date at job start Tue Mar 31 2020 13:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47049 * 239.99924 * 3 2 1 5 5 H 1.48502 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47416 * 120.00082 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00141 * 270.00035 * 10 9 7 12 12 C 1.50704 * 109.46997 * 270.00198 * 11 10 9 13 13 C 1.38678 * 120.41534 * 269.72283 * 12 11 10 14 14 C 1.38630 * 118.41894 * 179.78515 * 13 12 11 15 15 C 1.38228 * 119.16109 * 0.50706 * 14 13 12 16 16 N 1.31862 * 120.76256 * 359.73134 * 15 14 13 17 17 C 1.31885 * 121.72622 * 359.97438 * 16 15 14 18 18 C 1.34776 * 120.00035 * 89.99879 * 10 9 7 19 19 O 1.21688 * 120.00432 * 180.02562 * 18 10 9 20 20 C 1.46429 * 119.99710 * 0.02562 * 18 10 9 21 21 C 1.34812 * 119.99637 * 179.97438 * 20 18 10 22 22 C 1.47217 * 119.99748 * 179.97438 * 21 20 18 23 23 C 1.39836 * 120.16650 * 179.97438 * 22 21 20 24 24 C 1.37887 * 119.82337 * 179.97438 * 23 22 21 25 25 C 1.38405 * 120.17263 * 0.02562 * 24 23 22 26 26 C 1.38405 * 120.34297 * 359.97438 * 25 24 23 27 27 C 1.37887 * 120.16890 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46910 * 59.99693 * 9 7 2 30 30 H 1.08998 * 109.47042 * 300.00088 * 9 7 2 31 31 H 1.09006 * 109.47112 * 29.99471 * 11 10 9 32 32 H 1.08995 * 109.47436 * 150.00180 * 11 10 9 33 33 H 1.07993 * 120.78988 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.41785 * 180.21759 * 14 13 12 35 35 H 1.07996 * 119.62104 * 179.74956 * 15 14 13 36 36 H 1.08002 * 119.61780 * 180.02562 * 17 16 15 37 37 H 1.07996 * 120.00185 * 359.97438 * 20 18 10 38 38 H 1.07996 * 120.00178 * 359.97438 * 21 20 18 39 39 H 1.08000 * 120.08716 * 359.96069 * 23 22 21 40 40 H 1.08003 * 119.91440 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.82948 * 179.72315 * 25 24 23 42 42 H 1.07995 * 119.91173 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.07988 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2681 12 6 1.7623 -5.2837 -1.7032 13 6 2.0114 -6.5908 -1.3126 14 6 1.1387 -7.5826 -1.7328 15 6 0.0629 -7.2397 -2.5302 16 7 -0.1402 -5.9865 -2.8864 17 6 0.6658 -5.0165 -2.5006 18 6 2.6409 -4.1249 1.1677 19 8 3.4321 -5.0495 1.1678 20 6 2.1647 -3.5687 2.4358 21 6 2.6024 -4.0814 3.6033 22 6 2.1241 -3.5219 4.8782 23 6 2.5753 -4.0513 6.0913 24 6 2.1231 -3.5214 7.2812 25 6 1.2245 -2.4687 7.2771 26 6 0.7733 -1.9394 6.0805 27 6 1.2162 -2.4583 4.8823 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.6867 -3.3878 -2.0279 32 1 3.6884 -4.5595 -1.1378 33 1 2.8627 -6.8298 -0.6926 34 1 1.3000 -8.6109 -1.4446 35 1 -0.6192 -8.0070 -2.8651 36 1 0.4670 -4.0017 -2.8121 37 1 1.4629 -2.7478 2.4358 38 1 3.3039 -4.9025 3.6033 39 1 3.2760 -4.8731 6.0961 40 1 2.4709 -3.9289 8.2190 41 1 0.8704 -2.0609 8.2124 42 1 0.0718 -1.1182 6.0854 43 1 0.8635 -2.0439 3.9494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057682274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:08 Heat of formation + Delta-G solvation = 40.730955 kcal Electronic energy + Delta-G solvation = -25812.310123 eV Core-core repulsion = 22208.583587 eV Total energy + Delta-G solvation = -3603.726536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.07611 -39.23923 -38.69446 -35.34087 -33.83859 -33.00079 -32.13474 -31.34814 -30.88717 -29.36150 -27.58852 -26.20566 -23.82108 -23.40642 -22.84989 -22.45392 -21.82823 -20.14877 -17.96500 -17.30508 -16.92517 -16.56916 -16.28081 -15.78779 -15.68628 -15.12147 -14.99725 -14.60695 -14.38992 -14.00731 -13.57093 -13.38181 -13.24447 -13.05195 -12.83783 -12.81235 -12.69563 -12.40148 -11.91417 -11.81798 -11.53113 -11.18676 -11.11465 -11.02138 -10.84290 -10.64205 -10.23004 -10.07585 -9.88033 -9.60982 -9.29577 -9.23510 -8.87325 -8.76610 -8.59493 -8.08862 -7.77197 -6.23628 -4.31766 0.82824 1.30277 1.50115 1.52623 2.31071 3.21583 3.26920 3.29669 3.76004 3.79782 4.11735 4.22014 4.30216 4.67333 4.90736 4.92922 5.02734 5.03479 5.09418 5.16407 5.18287 5.24683 5.31051 5.46377 5.52837 5.60354 5.64985 5.77958 5.89563 6.03295 6.06686 6.12839 6.15812 6.35224 6.37567 6.47905 6.56528 6.59894 6.62258 6.76381 6.92656 6.93789 7.07080 7.12277 7.42511 7.70511 7.97863 8.18439 8.20688 8.72064 8.89848 9.36531 10.82756 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007999 B = 0.004567 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.508002 B = 6129.159057 C = 8688.696727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.896 3.104 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.583 5.583 11 C 0.160 3.840 12 C -0.145 4.145 13 C -0.056 4.056 14 C -0.182 4.182 15 C 0.089 3.911 16 N -0.489 5.489 17 C 0.115 3.885 18 C 0.547 3.453 19 O -0.576 6.576 20 C -0.168 4.168 21 C -0.062 4.062 22 C -0.058 4.058 23 C -0.106 4.106 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.120 4.120 27 C -0.102 4.102 28 H 0.267 0.733 29 H 0.038 0.962 30 H 0.039 0.961 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.143 0.857 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -8.952 6.303 11.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.117 3.883 10 N -0.311 5.311 11 C 0.036 3.964 12 C -0.148 4.148 13 C -0.082 4.082 14 C -0.202 4.202 15 C -0.068 4.068 16 N -0.198 5.198 17 C -0.042 4.042 18 C 0.338 3.662 19 O -0.460 6.460 20 C -0.188 4.188 21 C -0.082 4.082 22 C -0.058 4.058 23 C -0.125 4.125 24 C -0.145 4.145 25 C -0.140 4.140 26 C -0.138 4.138 27 C -0.120 4.120 28 H 0.076 0.924 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.155 0.845 34 H 0.147 0.853 35 H 0.167 0.833 36 H 0.175 0.825 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.142 0.858 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.137 -9.052 5.729 10.773 hybrid contribution 1.015 0.917 0.556 1.477 sum 2.152 -8.135 6.284 10.502 Atomic orbital electron populations 1.69909 1.05959 1.27536 1.49322 1.24920 0.94830 0.99226 0.94625 0.86588 0.79608 0.82598 0.78921 1.20073 1.21117 1.20043 1.21445 0.93631 0.90313 1.52481 0.92020 1.19513 0.87486 0.82435 0.98843 1.48141 1.45152 1.34151 1.03702 1.20144 0.95916 0.93353 0.86945 1.21431 0.98673 0.95963 0.98774 1.21669 0.98631 0.92182 0.95751 1.22105 0.96965 1.00420 1.00661 1.22697 0.95765 0.93560 0.94751 1.67707 1.28932 1.00805 1.22326 1.22813 0.89599 0.98579 0.93255 1.18267 0.80828 0.82292 0.84808 1.90669 1.36439 1.30638 1.88204 1.23359 1.02054 1.01432 0.91974 1.22204 0.97479 0.98089 0.90465 1.19104 0.97404 0.96311 0.92977 1.21320 0.99688 0.99753 0.91689 1.21024 0.98386 0.97287 0.97773 1.21231 0.97869 0.96905 0.97972 1.21131 1.00200 1.00097 0.92332 1.21642 0.96031 0.95268 0.99017 0.92365 0.94403 0.94307 0.88946 0.89720 0.84450 0.85269 0.83295 0.82484 0.83966 0.85293 0.85848 0.86186 0.86323 0.85833 0.84735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.54 -13.45 9.39 -34.44 -0.32 -13.77 16 8 H 0.06 1.57 7.81 -52.49 -0.41 1.16 16 9 C 0.24 5.37 4.87 -5.19 -0.03 5.35 16 10 N -0.58 -11.79 2.44 -178.08 -0.43 -12.22 16 11 C 0.16 2.82 5.56 -5.19 -0.03 2.79 16 12 C -0.15 -2.40 5.48 -104.48 -0.57 -2.97 16 13 C -0.06 -0.85 9.86 -39.27 -0.39 -1.24 16 14 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 15 C 0.09 1.23 11.18 -17.54 -0.20 1.04 16 16 N -0.49 -8.03 10.36 -13.25 -0.14 -8.17 16 17 C 0.11 1.91 10.86 -17.55 -0.19 1.72 16 18 C 0.55 11.16 7.60 -12.96 -0.10 11.06 16 19 O -0.58 -12.20 15.46 5.20 0.08 -12.12 16 20 C -0.17 -3.16 8.61 -37.50 -0.32 -3.48 16 21 C -0.06 -1.03 9.46 -37.15 -0.35 -1.38 16 22 C -0.06 -0.87 5.87 -105.06 -0.62 -1.49 16 23 C -0.11 -1.36 9.80 -39.11 -0.38 -1.74 16 24 C -0.13 -1.44 10.03 -39.65 -0.40 -1.84 16 25 C -0.12 -1.40 10.04 -39.46 -0.40 -1.80 16 26 C -0.12 -1.56 10.03 -39.65 -0.40 -1.96 16 27 C -0.10 -1.54 9.41 -39.12 -0.37 -1.91 16 28 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 29 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 30 H 0.04 0.92 6.09 -51.93 -0.32 0.60 16 31 H 0.09 1.57 8.02 -51.93 -0.42 1.15 16 32 H 0.08 1.46 7.37 -51.93 -0.38 1.08 16 33 H 0.14 2.11 7.71 -52.49 -0.40 1.71 16 34 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.16 2.54 8.06 -52.49 -0.42 2.12 16 37 H 0.14 2.78 4.22 -52.49 -0.22 2.56 16 38 H 0.13 2.06 7.52 -52.49 -0.39 1.66 16 39 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 40 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 43 H 0.13 2.16 6.17 -52.48 -0.32 1.84 16 LS Contribution 373.73 15.07 5.63 5.63 Total: -1.00 -28.93 373.73 -10.08 -39.01 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -5.38 Total: 8.53 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -5.55 Total: -12.80 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 0.16 Total: -43.28 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: 0.08 Total: -12.12 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -28.93 -10.08 -39.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.741 kcal (2) G-P(sol) polarization free energy of solvation -28.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds