Wall clock time and date at job start Tue Mar 31 2020 13:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00028 * 2 1 4 4 H 1.48498 * 109.47049 * 239.99924 * 3 2 1 5 5 H 1.48502 * 109.47084 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47416 * 120.00082 * 3 2 1 7 7 C 1.37879 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99675 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00182 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47151 * 179.97438 * 9 7 2 11 11 C 1.46497 * 120.00141 * 270.00035 * 10 9 7 12 12 C 1.50704 * 109.46997 * 270.00198 * 11 10 9 13 13 C 1.38678 * 120.41534 * 269.72283 * 12 11 10 14 14 C 1.38630 * 118.41894 * 179.78515 * 13 12 11 15 15 C 1.38228 * 119.16109 * 0.50706 * 14 13 12 16 16 N 1.31862 * 120.76256 * 359.73134 * 15 14 13 17 17 C 1.31885 * 121.72622 * 359.97438 * 16 15 14 18 18 C 1.34776 * 120.00035 * 89.99879 * 10 9 7 19 19 O 1.21688 * 120.00432 * 180.02562 * 18 10 9 20 20 C 1.46429 * 119.99710 * 0.02562 * 18 10 9 21 21 C 1.34812 * 119.99637 * 179.97438 * 20 18 10 22 22 C 1.47217 * 119.99748 * 179.97438 * 21 20 18 23 23 C 1.39836 * 120.16650 * 179.97438 * 22 21 20 24 24 C 1.37887 * 119.82337 * 179.97438 * 23 22 21 25 25 C 1.38405 * 120.17263 * 0.02562 * 24 23 22 26 26 C 1.38405 * 120.34297 * 359.97438 * 25 24 23 27 27 C 1.37887 * 120.16890 * 0.02562 * 26 25 24 28 28 H 0.96997 * 119.99868 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.46910 * 59.99693 * 9 7 2 30 30 H 1.08998 * 109.47042 * 300.00088 * 9 7 2 31 31 H 1.09006 * 109.47112 * 29.99471 * 11 10 9 32 32 H 1.08995 * 109.47436 * 150.00180 * 11 10 9 33 33 H 1.07993 * 120.78988 * 0.02562 * 13 12 11 34 34 H 1.08000 * 120.41785 * 180.21759 * 14 13 12 35 35 H 1.07996 * 119.62104 * 179.74956 * 15 14 13 36 36 H 1.08002 * 119.61780 * 180.02562 * 17 16 15 37 37 H 1.07996 * 120.00185 * 359.97438 * 20 18 10 38 38 H 1.07996 * 120.00178 * 359.97438 * 21 20 18 39 39 H 1.08000 * 120.08716 * 359.96069 * 23 22 21 40 40 H 1.08003 * 119.91440 * 180.02562 * 24 23 22 41 41 H 1.07999 * 119.82948 * 179.72315 * 25 24 23 42 42 H 1.07995 * 119.91173 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.07988 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6790 -4.1695 -1.2681 12 6 1.7623 -5.2837 -1.7032 13 6 2.0114 -6.5908 -1.3126 14 6 1.1387 -7.5826 -1.7328 15 6 0.0629 -7.2397 -2.5302 16 7 -0.1402 -5.9865 -2.8864 17 6 0.6658 -5.0165 -2.5006 18 6 2.6409 -4.1249 1.1677 19 8 3.4321 -5.0495 1.1678 20 6 2.1647 -3.5687 2.4358 21 6 2.6024 -4.0814 3.6033 22 6 2.1241 -3.5219 4.8782 23 6 2.5753 -4.0513 6.0913 24 6 2.1231 -3.5214 7.2812 25 6 1.2245 -2.4687 7.2771 26 6 0.7733 -1.9394 6.0805 27 6 1.2162 -2.4583 4.8823 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5570 -0.8897 30 1 0.6240 -2.5567 0.8903 31 1 2.6867 -3.3878 -2.0279 32 1 3.6884 -4.5595 -1.1378 33 1 2.8627 -6.8298 -0.6926 34 1 1.3000 -8.6109 -1.4446 35 1 -0.6192 -8.0070 -2.8651 36 1 0.4670 -4.0017 -2.8121 37 1 1.4629 -2.7478 2.4358 38 1 3.3039 -4.9025 3.6033 39 1 3.2760 -4.8731 6.0961 40 1 2.4709 -3.9289 8.2190 41 1 0.8704 -2.0609 8.2124 42 1 0.0718 -1.1182 6.0854 43 1 0.8635 -2.0439 3.9494 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057682274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:07 Heat of formation + Delta-G solvation = 27.577202 kcal Electronic energy + Delta-G solvation = -25812.880512 eV Core-core repulsion = 22208.583587 eV Total energy + Delta-G solvation = -3604.296926 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.39404 -40.53853 -39.90060 -36.95425 -35.19837 -34.67934 -33.55771 -32.60166 -31.89754 -30.55141 -29.37651 -27.63404 -25.28965 -24.76428 -24.32380 -23.53366 -23.01057 -21.41152 -19.48988 -18.67060 -18.60789 -17.93261 -17.52190 -17.21040 -17.01996 -16.52103 -16.38891 -15.98430 -15.67091 -15.35806 -14.86702 -14.61663 -14.37691 -14.26739 -14.21029 -14.20169 -13.94613 -13.84452 -13.59055 -13.25050 -13.01893 -12.77329 -12.67982 -12.44181 -12.14049 -12.07511 -11.80907 -11.74270 -11.29264 -11.01638 -10.74019 -10.56183 -10.47169 -9.98520 -9.88191 -9.57896 -9.14564 -8.21116 -6.35896 -0.39376 0.11286 0.32205 0.49340 1.06882 1.41638 1.42490 1.50058 2.24766 2.37979 2.44506 2.94149 2.99353 3.09261 3.53057 3.59418 3.85004 3.87557 3.89038 4.07651 4.08803 4.09550 4.18495 4.26066 4.38373 4.47918 4.55333 4.59796 4.67188 4.71981 4.82106 4.86338 5.00114 5.07105 5.16144 5.18559 5.22630 5.30284 5.38160 5.54913 5.59308 5.64690 5.74741 5.76711 5.79733 6.03251 6.07014 6.49832 6.78045 6.99883 7.25147 7.37770 8.84176 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.007999 B = 0.004567 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3499.508002 B = 6129.159057 C = 8688.696727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.256 3.744 10 N -0.587 5.587 11 C 0.161 3.839 12 C -0.156 4.156 13 C -0.065 4.065 14 C -0.169 4.169 15 C 0.089 3.911 16 N -0.510 5.510 17 C 0.100 3.900 18 C 0.545 3.455 19 O -0.589 6.589 20 C -0.210 4.210 21 C -0.026 4.026 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.124 4.124 25 C -0.110 4.110 26 C -0.132 4.132 27 C -0.121 4.121 28 H 0.268 0.732 29 H 0.023 0.977 30 H 0.024 0.976 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.136 0.864 34 H 0.167 0.833 35 H 0.187 0.813 36 H 0.149 0.851 37 H 0.126 0.874 38 H 0.137 0.863 39 H 0.146 0.854 40 H 0.157 0.843 41 H 0.153 0.847 42 H 0.135 0.865 43 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -10.228 8.552 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.175 4.175 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.584 4.584 8 H 0.071 0.929 9 C 0.135 3.865 10 N -0.315 5.315 11 C 0.038 3.962 12 C -0.159 4.159 13 C -0.091 4.091 14 C -0.188 4.188 15 C -0.068 4.068 16 N -0.219 5.219 17 C -0.056 4.056 18 C 0.337 3.663 19 O -0.474 6.474 20 C -0.230 4.230 21 C -0.046 4.046 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.150 4.150 27 C -0.139 4.139 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.154 0.846 34 H 0.185 0.815 35 H 0.204 0.796 36 H 0.166 0.834 37 H 0.144 0.856 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.175 0.825 41 H 0.170 0.830 42 H 0.153 0.847 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 1.668 -10.331 7.966 13.151 hybrid contribution 0.832 1.214 0.031 1.472 sum 2.500 -9.117 7.996 12.382 Atomic orbital electron populations 1.70004 1.07142 1.28247 1.50242 1.25592 0.95503 1.02083 0.94313 0.85685 0.78494 0.79125 0.78872 1.19596 1.20599 1.19922 1.21608 0.93266 0.91441 1.52082 0.92891 1.19089 0.87425 0.82720 0.97260 1.48085 1.44858 1.33738 1.04816 1.20191 0.96292 0.93839 0.85870 1.21272 0.98751 0.96226 0.99689 1.21779 0.99244 0.92169 0.95947 1.22477 0.95595 1.01646 0.99113 1.23358 0.96277 0.93248 0.93883 1.67717 1.29181 1.01905 1.23112 1.22722 0.90141 0.98704 0.94081 1.18495 0.80536 0.82087 0.85190 1.90633 1.37132 1.31196 1.88417 1.23124 1.04535 1.03066 0.92297 1.22410 0.95160 0.96486 0.90552 1.19151 0.99041 0.97510 0.93232 1.21641 0.99334 0.99843 0.91154 1.21481 0.97420 0.96617 0.98624 1.21675 0.96552 0.96066 0.98457 1.21362 1.00686 1.00690 0.92288 1.21618 0.97025 0.96114 0.99125 0.92284 0.95852 0.95806 0.89103 0.89555 0.84628 0.81519 0.79607 0.83355 0.85632 0.84491 0.83655 0.82515 0.82969 0.84668 0.87213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.40 13.29 21.45 0.28 -50.12 16 2 C 0.03 1.35 5.46 84.66 0.46 1.82 16 3 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.55 -28.39 9.39 25.60 0.24 -28.15 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.26 12.37 4.87 85.63 0.42 12.79 16 10 N -0.59 -25.11 2.44 -835.54 -2.04 -27.15 16 11 C 0.16 5.99 5.56 85.64 0.48 6.46 16 12 C -0.16 -5.33 5.48 -19.77 -0.11 -5.44 16 13 C -0.06 -1.96 9.86 22.47 0.22 -1.74 16 14 C -0.17 -4.12 10.11 22.36 0.23 -3.90 16 15 C 0.09 2.30 11.18 84.69 0.95 3.24 16 16 N -0.51 -16.69 10.36 -195.84 -2.03 -18.71 16 17 C 0.10 3.47 10.86 84.67 0.92 4.39 16 18 C 0.54 23.27 7.60 86.38 0.66 23.93 16 19 O -0.59 -25.55 15.46 -4.31 -0.07 -25.62 16 20 C -0.21 -8.37 8.61 23.62 0.20 -8.16 16 21 C -0.03 -0.88 9.46 23.84 0.23 -0.66 16 22 C -0.09 -2.67 5.87 -20.15 -0.12 -2.79 16 23 C -0.10 -2.34 9.80 22.57 0.22 -2.12 16 24 C -0.12 -2.32 10.03 22.23 0.22 -2.10 16 25 C -0.11 -2.15 10.04 22.35 0.22 -1.93 16 26 C -0.13 -3.32 10.03 22.23 0.22 -3.10 16 27 C -0.12 -3.76 9.41 22.57 0.21 -3.55 16 28 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 29 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 30 H 0.02 1.23 6.09 -2.39 -0.01 1.21 16 31 H 0.09 3.30 8.02 -2.38 -0.02 3.28 16 32 H 0.09 3.12 7.37 -2.39 -0.02 3.11 16 33 H 0.14 4.14 7.71 -2.91 -0.02 4.12 16 34 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 35 H 0.19 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.15 5.21 8.06 -2.91 -0.02 5.18 16 37 H 0.13 5.40 4.22 -2.91 -0.01 5.39 16 38 H 0.14 4.33 7.52 -2.91 -0.02 4.30 16 39 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 42 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 43 H 0.11 3.88 6.17 -2.91 -0.02 3.87 16 Total: -1.00 -64.24 373.73 5.07 -59.18 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 1.02 Total: 29.53 kcal Atomic # 6 Polarization: -16.88 SS G_CDS: 5.87 Total: -11.00 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -3.78 Total: -95.98 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -64.24 5.07 -59.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057682274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.753 kcal (2) G-P(sol) polarization free energy of solvation -64.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds