Wall clock time and date at job start Tue Mar 31 2020 13:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99958 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99865 * 3 2 1 7 7 C 1.38954 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 359.72362 * 7 2 1 9 9 N 1.37105 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.46469 * 110.99748 * 295.97954 * 13 12 10 15 15 C 1.50350 * 111.29813 * 279.35623 * 14 13 12 16 16 C 1.37853 * 121.05518 * 104.10128 * 15 14 13 17 17 C 1.38393 * 119.93074 * 177.82853 * 16 15 14 18 18 C 1.38349 * 120.44478 * 0.04724 * 17 16 15 19 19 C 1.38183 * 120.11702 * 0.43989 * 18 17 16 20 20 C 1.38884 * 119.54828 * 359.89813 * 19 18 17 21 21 C 1.48320 * 121.52552 * 179.11637 * 20 19 18 22 22 C 1.38888 * 121.51906 * 49.09505 * 21 20 19 23 23 C 1.38179 * 119.54810 * 177.89308 * 22 21 20 24 24 C 1.38338 * 120.11676 * 0.04433 * 23 22 21 25 25 C 1.38380 * 120.45459 * 0.42964 * 24 23 22 26 26 C 1.37860 * 119.93181 * 359.88218 * 25 24 23 27 27 C 1.46480 * 111.00382 * 170.00225 * 13 12 10 28 28 H 0.96995 * 119.99830 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 30 30 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 31 31 H 1.09002 * 109.47152 * 59.99956 * 12 10 9 32 32 H 1.09002 * 109.11470 * 39.83212 * 14 13 12 33 33 H 1.09007 * 109.11167 * 158.89311 * 14 13 12 34 34 H 1.08005 * 120.03916 * 357.80887 * 16 15 14 35 35 H 1.07992 * 119.77721 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.93712 * 180.41131 * 18 17 16 37 37 H 1.07997 * 120.22200 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.22462 * 357.87325 * 22 21 20 39 39 H 1.08005 * 119.94020 * 180.02562 * 23 22 21 40 40 H 1.08009 * 119.77375 * 180.40702 * 24 23 22 41 41 H 1.07997 * 120.03689 * 179.90918 * 25 24 23 42 42 H 1.08999 * 109.10788 * 290.06096 * 27 13 12 43 43 H 1.08999 * 109.10973 * 49.17574 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0055 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0072 11 8 3.4472 -3.4210 0.0127 12 6 5.5607 -2.3707 0.0072 13 7 6.0504 -3.7556 0.0150 14 6 5.6606 -4.4431 1.2482 15 6 6.5821 -4.0929 2.3834 16 6 6.1903 -3.2169 3.3731 17 6 7.0401 -2.9455 4.4311 18 6 8.2838 -3.5472 4.5035 19 6 8.6909 -4.4192 3.5119 20 6 7.8428 -4.6878 2.4454 21 6 8.2427 -5.6012 1.3474 22 6 8.7760 -6.8573 1.6058 23 6 9.0941 -7.6925 0.5520 24 6 8.8828 -7.2777 -0.7507 25 6 8.3607 -6.0230 -1.0113 26 6 8.0456 -5.1788 0.0321 27 6 7.4951 -3.8030 -0.2221 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3634 -0.0030 30 1 5.9241 -1.8616 -0.8855 31 1 5.9240 -1.8522 0.8945 32 1 4.6433 -4.1538 1.5119 33 1 5.6925 -5.5199 1.0819 34 1 5.2213 -2.7426 3.3227 35 1 6.7304 -2.2592 5.2053 36 1 8.9377 -3.3347 5.3363 37 1 9.6616 -4.8895 3.5664 38 1 8.9413 -7.1789 2.6235 39 1 9.5088 -8.6708 0.7457 40 1 9.1273 -7.9376 -1.5701 41 1 8.1998 -5.7055 -2.0309 42 1 7.6963 -3.5236 -1.2563 43 1 7.9891 -3.0935 0.4417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066497834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:02 Heat of formation + Delta-G solvation = 34.423147 kcal Electronic energy + Delta-G solvation = -26745.106599 eV Core-core repulsion = 23141.106536 eV Total energy + Delta-G solvation = -3604.000063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86488 -38.62951 -38.32599 -36.44514 -33.94791 -32.77669 -31.90238 -31.71556 -31.28303 -29.28829 -27.81341 -26.46564 -24.80295 -23.71319 -23.05622 -21.56673 -20.66700 -20.52994 -19.31199 -18.22248 -17.00376 -16.51710 -16.05463 -15.92940 -15.52978 -15.24702 -14.95545 -14.65556 -14.42060 -14.28661 -13.82237 -13.57326 -13.44812 -13.19199 -12.91739 -12.69203 -12.59410 -12.44785 -12.09069 -11.98841 -11.80929 -11.62087 -11.43501 -11.14309 -11.02578 -10.88189 -10.74623 -10.59808 -9.97687 -9.53472 -9.39271 -9.01801 -8.80277 -8.53377 -8.35391 -8.17228 -7.89459 -6.31143 -3.82467 0.80270 1.24146 1.35566 1.64561 3.02307 3.06846 3.15006 3.55389 3.67262 3.74771 4.09830 4.19080 4.50347 4.66127 4.77934 4.81132 4.84522 4.90910 4.94015 5.00122 5.19538 5.22718 5.33302 5.34772 5.45245 5.51500 5.59629 5.63429 5.75244 5.79869 5.83106 5.92278 5.93457 5.97410 6.04802 6.25578 6.37146 6.39486 6.42488 6.45335 6.51233 6.67906 6.88004 6.95132 7.19140 7.31116 7.58561 8.14549 8.60126 8.95212 9.42479 9.83040 10.81962 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003670 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.037477 B = 7628.324781 C = 8663.380761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.042 3.958 3 Si 0.878 3.122 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.590 5.590 10 C 0.454 3.546 11 O -0.558 6.558 12 C 0.040 3.960 13 N -0.501 5.501 14 C 0.089 3.911 15 C -0.100 4.100 16 C -0.105 4.105 17 C -0.117 4.117 18 C -0.123 4.123 19 C -0.108 4.108 20 C -0.046 4.046 21 C -0.041 4.041 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.099 4.099 26 C -0.064 4.064 27 C 0.094 3.906 28 H 0.273 0.727 29 H 0.370 0.630 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.080 0.920 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.127 0.873 42 H 0.083 0.917 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.955 -7.896 4.693 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.432 4.432 8 H 0.138 0.862 9 N -0.230 5.230 10 C 0.239 3.761 11 O -0.439 6.439 12 C -0.091 4.091 13 N -0.223 5.223 14 C -0.038 4.038 15 C -0.102 4.102 16 C -0.124 4.124 17 C -0.135 4.135 18 C -0.142 4.142 19 C -0.126 4.126 20 C -0.046 4.046 21 C -0.042 4.042 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.138 4.138 25 C -0.117 4.117 26 C -0.064 4.064 27 C -0.033 4.033 28 H 0.084 0.916 29 H 0.203 0.797 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.145 0.855 42 H 0.101 0.899 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 21.080 -8.717 4.277 23.209 hybrid contribution 0.994 1.865 0.736 2.238 sum 22.074 -6.852 5.013 23.650 Atomic orbital electron populations 1.69620 1.05633 1.27472 1.49401 1.25029 0.95466 0.97924 0.97675 0.86696 0.79781 0.84139 0.78936 1.19589 1.20206 1.19512 1.19426 0.79175 0.96617 1.48026 0.86230 1.42214 1.07527 1.06116 1.67140 1.19585 0.87963 0.84556 0.83975 1.90545 1.69301 1.30740 1.53359 1.21918 0.95622 0.89772 1.01803 1.61408 1.11038 1.14834 1.35049 1.21198 0.98800 0.99623 0.84158 1.20892 0.95057 0.96316 0.97944 1.21159 1.00083 0.97451 0.93667 1.21241 0.94204 0.99798 0.98268 1.21082 0.96557 0.97750 0.98776 1.21022 0.99161 0.98676 0.93725 1.18695 0.94205 0.97448 0.94293 1.18681 0.99231 0.94149 0.92096 1.21019 0.99165 0.93058 0.99201 1.21088 1.00626 0.99541 0.92675 1.21183 0.99605 0.96219 0.96778 1.20954 0.98315 0.93615 0.98843 1.19772 0.98304 0.96016 0.92311 1.20818 0.87941 0.92902 1.01591 0.91626 0.79735 0.89116 0.93112 0.87294 0.90173 0.85453 0.86022 0.86086 0.86064 0.85970 0.86026 0.86026 0.85531 0.89867 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.62 13.96 55.50 0.77 -24.84 16 2 C 0.04 1.14 5.50 -17.47 -0.10 1.05 16 3 Si 0.88 19.25 27.73 -169.99 -4.71 14.53 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 6 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 7 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 8 H 0.12 3.83 7.39 -52.49 -0.39 3.44 16 9 N -0.59 -13.89 5.09 -10.96 -0.06 -13.94 16 10 C 0.45 10.16 7.29 -10.99 -0.08 10.08 16 11 O -0.56 -14.64 13.94 5.55 0.08 -14.57 16 12 C 0.04 0.69 5.35 -4.98 -0.03 0.66 16 13 N -0.50 -8.35 4.54 -240.13 -1.09 -9.44 16 14 C 0.09 1.52 4.59 -5.38 -0.02 1.50 16 15 C -0.10 -1.48 4.42 -104.45 -0.46 -1.95 16 16 C -0.10 -1.48 9.47 -39.67 -0.38 -1.86 16 17 C -0.12 -1.39 10.03 -39.48 -0.40 -1.78 16 18 C -0.12 -1.33 10.04 -39.56 -0.40 -1.72 16 19 C -0.11 -1.23 9.66 -39.36 -0.38 -1.61 16 20 C -0.05 -0.61 4.76 -105.03 -0.50 -1.11 16 21 C -0.04 -0.53 4.76 -105.02 -0.50 -1.03 16 22 C -0.11 -1.17 9.66 -39.36 -0.38 -1.55 16 23 C -0.12 -1.19 10.04 -39.57 -0.40 -1.59 16 24 C -0.12 -1.20 10.03 -39.49 -0.40 -1.60 16 25 C -0.10 -1.13 9.70 -39.67 -0.38 -1.52 16 26 C -0.06 -0.83 4.84 -104.44 -0.51 -1.34 16 27 C 0.09 1.29 4.85 -5.38 -0.03 1.26 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 30 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 31 H 0.05 0.80 7.60 -51.93 -0.39 0.41 16 32 H 0.11 2.18 5.47 -51.93 -0.28 1.89 16 33 H 0.08 1.41 7.25 -51.92 -0.38 1.04 16 34 H 0.13 1.87 8.05 -52.48 -0.42 1.45 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 38 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.13 1.28 8.05 -52.49 -0.42 0.85 16 42 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 43 H 0.04 0.58 7.15 -51.93 -0.37 0.21 16 LS Contribution 350.63 15.07 5.28 5.28 Total: -1.00 -32.20 350.63 -10.64 -42.84 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -5.43 Total: 12.86 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -5.48 Total: -12.73 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: -0.37 Total: -48.22 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.57 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.20 -10.64 -42.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.261 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds