Wall clock time and date at job start Tue Mar 31 2020 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86801 * 120.00150 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99798 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99958 * 3 2 1 6 6 H 1.48502 * 109.46906 * 149.99865 * 3 2 1 7 7 C 1.38954 * 119.99692 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00345 * 359.72362 * 7 2 1 9 9 N 1.37105 * 119.99815 * 180.02562 * 7 2 1 10 10 C 1.34777 * 119.99904 * 179.72596 * 9 7 2 11 11 O 1.21288 * 119.99985 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99735 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47176 * 179.97438 * 12 10 9 14 14 C 1.46469 * 110.99748 * 295.97954 * 13 12 10 15 15 C 1.50350 * 111.29813 * 279.35623 * 14 13 12 16 16 C 1.37853 * 121.05518 * 104.10128 * 15 14 13 17 17 C 1.38393 * 119.93074 * 177.82853 * 16 15 14 18 18 C 1.38349 * 120.44478 * 0.04724 * 17 16 15 19 19 C 1.38183 * 120.11702 * 0.43989 * 18 17 16 20 20 C 1.38884 * 119.54828 * 359.89813 * 19 18 17 21 21 C 1.48320 * 121.52552 * 179.11637 * 20 19 18 22 22 C 1.38888 * 121.51906 * 49.09505 * 21 20 19 23 23 C 1.38179 * 119.54810 * 177.89308 * 22 21 20 24 24 C 1.38338 * 120.11676 * 0.04433 * 23 22 21 25 25 C 1.38380 * 120.45459 * 0.42964 * 24 23 22 26 26 C 1.37860 * 119.93181 * 359.88218 * 25 24 23 27 27 C 1.46480 * 111.00382 * 170.00225 * 13 12 10 28 28 H 0.96995 * 119.99830 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99906 * 359.71935 * 9 7 2 30 30 H 1.09000 * 109.47333 * 299.99429 * 12 10 9 31 31 H 1.09002 * 109.47152 * 59.99956 * 12 10 9 32 32 H 1.09002 * 109.11470 * 39.83212 * 14 13 12 33 33 H 1.09007 * 109.11167 * 158.89311 * 14 13 12 34 34 H 1.08005 * 120.03916 * 357.80887 * 16 15 14 35 35 H 1.07992 * 119.77721 * 180.02562 * 17 16 15 36 36 H 1.08000 * 119.93712 * 180.41131 * 18 17 16 37 37 H 1.07997 * 120.22200 * 179.97438 * 19 18 17 38 38 H 1.08002 * 120.22462 * 357.87325 * 22 21 20 39 39 H 1.08005 * 119.94020 * 180.02562 * 23 22 21 40 40 H 1.08009 * 119.77375 * 180.40702 * 24 23 22 41 41 H 1.07997 * 120.03689 * 179.90918 * 25 24 23 42 42 H 1.08999 * 109.10788 * 290.06096 * 27 13 12 43 43 H 1.08999 * 109.10973 * 49.17574 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4689 -2.1386 0.0055 9 7 3.3799 -1.2034 0.0011 10 6 4.0537 -2.3707 0.0072 11 8 3.4472 -3.4210 0.0127 12 6 5.5607 -2.3707 0.0072 13 7 6.0504 -3.7556 0.0150 14 6 5.6606 -4.4431 1.2482 15 6 6.5821 -4.0929 2.3834 16 6 6.1903 -3.2169 3.3731 17 6 7.0401 -2.9455 4.4311 18 6 8.2838 -3.5472 4.5035 19 6 8.6909 -4.4192 3.5119 20 6 7.8428 -4.6878 2.4454 21 6 8.2427 -5.6012 1.3474 22 6 8.7760 -6.8573 1.6058 23 6 9.0941 -7.6925 0.5520 24 6 8.8828 -7.2777 -0.7507 25 6 8.3607 -6.0230 -1.0113 26 6 8.0456 -5.1788 0.0321 27 6 7.4951 -3.8030 -0.2221 28 1 -0.4850 0.8400 -0.0004 29 1 3.8649 -0.3634 -0.0030 30 1 5.9241 -1.8616 -0.8855 31 1 5.9240 -1.8522 0.8945 32 1 4.6433 -4.1538 1.5119 33 1 5.6925 -5.5199 1.0819 34 1 5.2213 -2.7426 3.3227 35 1 6.7304 -2.2592 5.2053 36 1 8.9377 -3.3347 5.3363 37 1 9.6616 -4.8895 3.5664 38 1 8.9413 -7.1789 2.6235 39 1 9.5088 -8.6708 0.7457 40 1 9.1273 -7.9376 -1.5701 41 1 8.1998 -5.7055 -2.0309 42 1 7.6963 -3.5236 -1.2563 43 1 7.9891 -3.0935 0.4417 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066497834.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:01 Heat of formation + Delta-G solvation = 13.859998 kcal Electronic energy + Delta-G solvation = -26745.998284 eV Core-core repulsion = 23141.106536 eV Total energy + Delta-G solvation = -3604.891748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89912 -40.28614 -39.25783 -37.74435 -35.94578 -33.80849 -33.66198 -32.85393 -32.37803 -30.17755 -29.26736 -27.53650 -26.54024 -24.70795 -24.23944 -22.49223 -21.77155 -21.51285 -21.19300 -20.11710 -17.95162 -17.86744 -17.19189 -17.15671 -16.87604 -16.59785 -16.14537 -15.93125 -15.58883 -15.39545 -15.18977 -15.11927 -14.68065 -14.32766 -14.30422 -13.99391 -13.74815 -13.69737 -13.33959 -13.14470 -13.04390 -12.84645 -12.71638 -12.54029 -12.41675 -12.07566 -11.97943 -11.83934 -11.69863 -11.46723 -10.40602 -10.27944 -10.23434 -9.92424 -9.72889 -9.37299 -9.05311 -8.41489 -6.02110 -0.09288 0.32512 0.46325 0.75958 1.29393 1.34539 1.43240 1.93388 2.22221 2.52572 2.68958 2.94965 3.14261 3.31218 3.59230 3.74728 3.77547 3.93010 3.96262 4.08932 4.13762 4.21894 4.28840 4.32513 4.39865 4.44330 4.47308 4.52562 4.64201 4.69485 4.77643 4.84450 4.98029 5.06356 5.07187 5.15448 5.38902 5.47277 5.52335 5.54411 5.58044 5.61532 5.74891 5.87762 5.98440 6.00979 6.08251 6.10830 6.59039 6.87577 7.38562 7.95088 8.76148 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.016447 B = 0.003670 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.037477 B = 7628.324781 C = 8663.380761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.962 3.038 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.234 1.234 7 C -0.326 4.326 8 H 0.056 0.944 9 N -0.590 5.590 10 C 0.455 3.545 11 O -0.603 6.603 12 C 0.054 3.946 13 N -0.520 5.520 14 C 0.104 3.896 15 C -0.118 4.118 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.105 4.105 20 C -0.051 4.051 21 C -0.059 4.059 22 C -0.112 4.112 23 C -0.119 4.119 24 C -0.121 4.121 25 C -0.110 4.110 26 C -0.086 4.086 27 C 0.099 3.901 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.107 0.893 35 H 0.142 0.858 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.150 0.850 40 H 0.147 0.853 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.544 -6.987 5.347 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.212 4.212 3 Si 0.782 3.218 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.157 1.157 7 C -0.455 4.455 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.243 3.757 11 O -0.487 6.487 12 C -0.077 4.077 13 N -0.242 5.242 14 C -0.023 4.023 15 C -0.120 4.120 16 C -0.143 4.143 17 C -0.136 4.136 18 C -0.131 4.131 19 C -0.123 4.123 20 C -0.051 4.051 21 C -0.060 4.060 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.139 4.139 25 C -0.128 4.128 26 C -0.087 4.087 27 C -0.027 4.027 28 H 0.089 0.911 29 H 0.224 0.776 30 H 0.141 0.859 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.160 0.840 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.168 0.832 40 H 0.165 0.835 41 H 0.154 0.846 42 H 0.117 0.883 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 25.702 -7.821 4.933 27.314 hybrid contribution -0.453 1.364 0.549 1.538 sum 25.249 -6.457 5.481 26.631 Atomic orbital electron populations 1.69801 1.08089 1.29213 1.50349 1.26073 0.96424 1.02570 0.96105 0.85406 0.79441 0.76946 0.80010 1.18052 1.19939 1.15694 1.18986 0.81302 0.94938 1.50243 0.92583 1.42015 1.05866 1.07419 1.67886 1.20669 0.90389 0.83413 0.81247 1.90531 1.71099 1.32526 1.54543 1.21805 0.90855 0.90918 1.04110 1.61375 1.13426 1.14327 1.35075 1.20787 0.97328 0.98545 0.85688 1.20644 0.95717 0.98014 0.97628 1.21113 1.00018 0.98245 0.94955 1.21475 0.94373 1.00066 0.97726 1.21481 0.96158 0.96254 0.99221 1.21355 0.99731 0.98333 0.92862 1.18817 0.93670 0.97414 0.95222 1.18832 1.00181 0.95033 0.91904 1.21279 0.98753 0.92480 1.00500 1.21468 0.99531 1.00436 0.92229 1.21532 0.98591 0.95902 0.97887 1.21184 0.98444 0.94187 0.99004 1.19848 0.99593 0.96145 0.93096 1.20837 0.85632 0.93843 1.02381 0.91143 0.77606 0.85878 0.91247 0.91473 0.91864 0.87491 0.84047 0.82636 0.83517 0.84394 0.83180 0.83521 0.84641 0.88344 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.96 21.66 0.30 -56.35 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 39.13 27.73 68.60 1.90 41.03 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 6 H -0.23 -8.07 6.52 99.48 0.65 -7.42 16 7 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 8 H 0.06 3.94 7.39 -2.92 -0.02 3.92 16 9 N -0.59 -28.35 5.09 -306.99 -1.56 -29.91 16 10 C 0.46 21.19 7.29 87.66 0.64 21.83 16 11 O -0.60 -34.05 13.94 -3.05 -0.04 -34.09 16 12 C 0.05 1.82 5.35 85.56 0.46 2.28 16 13 N -0.52 -17.55 4.54 -913.63 -4.15 -21.69 16 14 C 0.10 3.77 4.59 85.53 0.39 4.16 16 15 C -0.12 -3.56 4.42 -19.75 -0.09 -3.65 16 16 C -0.12 -3.57 9.47 22.22 0.21 -3.36 16 17 C -0.12 -2.60 10.03 22.33 0.22 -2.37 16 18 C -0.11 -2.05 10.04 22.28 0.22 -1.83 16 19 C -0.11 -2.08 9.66 22.41 0.22 -1.86 16 20 C -0.05 -1.28 4.76 -20.13 -0.10 -1.38 16 21 C -0.06 -1.44 4.76 -20.12 -0.10 -1.54 16 22 C -0.11 -2.22 9.66 22.41 0.22 -2.00 16 23 C -0.12 -1.99 10.04 22.28 0.22 -1.77 16 24 C -0.12 -2.14 10.03 22.33 0.22 -1.91 16 25 C -0.11 -2.36 9.70 22.21 0.22 -2.15 16 26 C -0.09 -2.18 4.84 -19.75 -0.10 -2.27 16 27 C 0.10 2.62 4.85 85.53 0.42 3.03 16 28 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.39 15.56 5.76 -92.70 -0.53 15.03 16 30 H 0.12 3.37 8.08 -2.39 -0.02 3.35 16 31 H 0.07 2.12 7.60 -2.39 -0.02 2.10 16 32 H 0.07 2.95 5.47 -2.39 -0.01 2.94 16 33 H 0.06 2.41 7.25 -2.38 -0.02 2.39 16 34 H 0.11 3.39 8.05 -2.91 -0.02 3.36 16 35 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.14 2.54 8.05 -2.91 -0.02 2.52 16 42 H 0.10 2.22 8.01 -2.39 -0.02 2.21 16 43 H 0.04 1.14 7.15 -2.39 -0.02 1.12 16 Total: -1.00 -77.44 350.63 1.50 -75.94 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: 0.44 Total: 38.51 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.61 Total: -13.43 kcal Atomic # 7 Polarization: -102.55 SS G_CDS: -5.41 Total: -107.95 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -0.04 Total: -34.09 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 1.90 Total: 41.03 kcal Total: -77.44 1.50 -75.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066497834.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.800 kcal (2) G-P(sol) polarization free energy of solvation -77.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds