Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47066 * 299.99901 * 3 2 1 6 6 H 1.48493 * 109.47152 * 60.00182 * 3 2 1 7 7 C 1.38955 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99467 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99892 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47351 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00078 * 173.93131 * 13 12 10 15 15 C 1.50699 * 109.61643 * 296.64220 * 14 13 12 16 16 C 1.38251 * 119.97036 * 157.78297 * 15 14 13 17 17 C 1.38192 * 120.02059 * 179.76818 * 16 15 14 18 18 C 1.38461 * 119.97795 * 0.50368 * 17 16 15 19 19 F 1.35097 * 120.02854 * 179.77077 * 18 17 16 20 20 C 1.38456 * 119.94482 * 359.75044 * 18 17 16 21 21 C 1.38197 * 119.97612 * 359.97438 * 20 18 17 22 22 C 1.53184 * 109.53247 * 176.42126 * 14 13 12 23 23 C 1.53085 * 109.16367 * 297.09832 * 22 14 13 24 24 O 1.42904 * 109.42900 * 302.40970 * 23 22 14 25 25 C 1.42895 * 114.09641 * 61.15166 * 24 23 22 26 26 C 1.53100 * 109.41654 * 298.84514 * 25 24 23 27 27 H 0.97006 * 119.99679 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00746 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47499 * 59.99593 * 12 10 9 30 30 H 1.09004 * 109.47072 * 300.00119 * 12 10 9 31 31 H 1.00900 * 110.99617 * 297.88554 * 13 12 10 32 32 H 1.07998 * 119.98819 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.01568 * 180.25492 * 17 16 15 34 34 H 1.08007 * 120.01223 * 179.97438 * 20 18 17 35 35 H 1.08002 * 119.98737 * 180.02562 * 21 20 18 36 36 H 1.09004 * 109.50868 * 177.19909 * 22 14 13 37 37 H 1.09000 * 109.52705 * 57.01752 * 22 14 13 38 38 H 1.09005 * 109.48078 * 182.42151 * 23 22 14 39 39 H 1.08999 * 109.48297 * 62.39994 * 23 22 14 40 40 H 1.08997 * 109.48165 * 58.82759 * 25 24 23 41 41 H 1.08998 * 109.48272 * 178.85339 * 25 24 23 42 42 H 1.08999 * 109.52088 * 177.51964 * 26 25 24 43 43 H 1.09005 * 109.51887 * 297.70445 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.5036 -7.2659 0.1451 15 6 0.8067 -7.3174 1.4804 16 6 -0.2578 -8.1786 1.6710 17 6 -0.8945 -8.2302 2.8964 18 6 -0.4726 -7.4115 3.9303 19 9 -1.0973 -7.4578 5.1273 20 6 0.5902 -6.5456 3.7365 21 6 1.2291 -6.4998 2.5119 22 6 2.5187 -8.4093 0.0523 23 6 3.1642 -8.3967 -1.3357 24 8 2.1480 -8.5128 -2.3337 25 6 1.1976 -7.4458 -2.3255 26 6 0.4727 -7.4203 -0.9772 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6172 -4.9205 -0.8902 30 1 0.6166 -4.9209 0.8897 31 1 2.7686 -5.9681 -0.8315 32 1 -0.5893 -8.8143 0.8633 33 1 -1.7235 -8.9060 3.0465 34 1 0.9200 -5.9062 4.5421 35 1 2.0585 -5.8248 2.3607 36 1 2.0105 -9.3608 0.2091 37 1 3.2878 -8.2764 0.8131 38 1 3.8562 -9.2345 -1.4224 39 1 3.7063 -7.4615 -1.4761 40 1 1.7137 -6.4981 -2.4786 41 1 0.4728 -7.5984 -3.1252 42 1 -0.2213 -6.5802 -0.9526 43 1 -0.0768 -8.3519 -0.8415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066539873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = -94.203503 kcal Electronic energy + Delta-G solvation = -27841.846234 eV Core-core repulsion = 23801.499276 eV Total energy + Delta-G solvation = -4040.346958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.90628 -40.84818 -38.56114 -38.11157 -35.77840 -33.95064 -32.05890 -31.49299 -31.20013 -30.69356 -29.84302 -26.69255 -24.85240 -24.17722 -23.57162 -22.87490 -21.81620 -19.40250 -19.05039 -17.96872 -17.75312 -16.92569 -16.45103 -16.15698 -16.01983 -15.61224 -15.53214 -15.07878 -14.79703 -14.73570 -14.33872 -14.18035 -13.82072 -13.68478 -13.48323 -13.20960 -13.01741 -12.66773 -12.39048 -12.23668 -12.13666 -11.88075 -11.56571 -11.50760 -11.38960 -11.09867 -10.99144 -10.89588 -10.40404 -10.36334 -10.24718 -9.63446 -9.54506 -9.10799 -8.56558 -8.56402 -8.13137 -7.99159 -6.44383 -3.85290 1.08414 1.22335 3.14401 3.25395 3.32217 3.53069 3.73404 3.86497 3.95857 4.21226 4.24105 4.41834 4.59025 4.70215 4.79376 4.84214 4.86783 5.04215 5.09355 5.19857 5.21926 5.30233 5.35130 5.45254 5.45635 5.56121 5.66050 5.66225 5.82139 5.88582 5.91061 5.95089 5.99109 6.07002 6.09769 6.21220 6.31264 6.51292 6.87432 7.04372 7.10274 7.49631 7.52862 8.03374 8.57972 9.15240 9.51266 10.02301 10.73287 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.004108 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.088992 B = 6814.955125 C = 8722.314544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.023 3.977 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.299 4.299 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.582 6.582 12 C 0.042 3.958 13 N -0.653 5.653 14 C 0.157 3.843 15 C -0.081 4.081 16 C -0.089 4.089 17 C -0.159 4.159 18 C 0.093 3.907 19 F -0.144 7.144 20 C -0.156 4.156 21 C -0.062 4.062 22 C -0.136 4.136 23 C 0.055 3.945 24 O -0.383 6.383 25 C 0.058 3.942 26 C -0.188 4.188 27 H 0.271 0.729 28 H 0.392 0.608 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.351 0.649 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.052 0.948 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.292 -18.097 0.903 18.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.429 4.429 8 H 0.121 0.879 9 N -0.199 5.199 10 C 0.226 3.774 11 O -0.466 6.466 12 C -0.090 4.090 13 N -0.287 5.287 14 C 0.065 3.935 15 C -0.082 4.082 16 C -0.108 4.108 17 C -0.178 4.178 18 C 0.074 3.926 19 F -0.123 7.123 20 C -0.175 4.175 21 C -0.080 4.080 22 C -0.174 4.174 23 C -0.022 4.022 24 O -0.301 6.301 25 C -0.019 4.019 26 C -0.227 4.227 27 H 0.081 0.919 28 H 0.225 0.775 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.173 0.827 32 H 0.148 0.852 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.114 0.886 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.468 -18.008 1.479 18.128 hybrid contribution -0.954 1.099 -0.334 1.493 sum -2.422 -16.909 1.145 17.120 Atomic orbital electron populations 1.69621 1.05953 1.28082 1.50552 1.25261 0.95616 0.99728 0.97286 0.85811 0.79723 0.81163 0.77726 1.19206 1.20762 1.20736 1.19742 0.93374 0.82180 1.47557 0.87853 1.41869 1.09187 1.04618 1.64273 1.19761 0.88363 0.84587 0.84671 1.90529 1.13651 1.87061 1.55381 1.21824 0.94627 0.90916 1.01666 1.60205 1.22341 0.99506 1.46623 1.19736 0.92222 0.90697 0.90828 1.19720 0.96051 0.97105 0.95286 1.20870 0.95011 0.98473 0.96408 1.21021 1.02461 1.01275 0.93023 1.17785 0.94382 0.99086 0.81374 1.91482 1.81501 1.95635 1.43669 1.21271 0.96559 1.00119 0.99503 1.21229 0.99121 0.97140 0.90479 1.22226 0.99173 0.97447 0.98589 1.22677 0.90048 1.02550 0.86928 1.87922 1.40266 1.47051 1.54890 1.22588 0.91674 0.90583 0.97022 1.23021 0.99778 1.03855 0.96064 0.91904 0.77526 0.93568 0.89208 0.82685 0.85173 0.85064 0.84747 0.83057 0.90510 0.89515 0.88569 0.92291 0.92971 0.88596 0.89939 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.54 16 2 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.83 29.55 -169.99 -5.02 15.81 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 7 C -0.30 -8.19 9.68 -14.93 -0.14 -8.33 16 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 9 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 10 C 0.44 9.96 7.84 -10.99 -0.09 9.87 16 11 O -0.58 -15.14 15.91 5.54 0.09 -15.05 16 12 C 0.04 0.70 4.86 -4.98 -0.02 0.67 16 13 N -0.65 -9.50 4.50 -102.21 -0.46 -9.96 16 14 C 0.16 1.81 0.53 -132.57 -0.07 1.74 16 15 C -0.08 -0.96 4.07 -104.62 -0.43 -1.39 16 16 C -0.09 -0.93 9.15 -39.59 -0.36 -1.29 16 17 C -0.16 -1.72 10.03 -39.52 -0.40 -2.12 16 18 C 0.09 1.16 7.30 -39.42 -0.29 0.88 16 19 F -0.14 -1.89 17.27 2.25 0.04 -1.86 16 20 C -0.16 -2.00 10.03 -39.52 -0.40 -2.40 16 21 C -0.06 -0.82 7.71 -39.60 -0.31 -1.13 16 22 C -0.14 -1.39 5.10 -26.59 -0.14 -1.53 16 23 C 0.05 0.56 6.58 37.20 0.24 0.81 16 24 O -0.38 -4.45 10.77 -35.23 -0.38 -4.83 16 25 C 0.06 0.63 6.58 37.21 0.24 0.87 16 26 C -0.19 -1.95 4.12 -26.59 -0.11 -2.06 16 27 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 28 H 0.39 9.34 7.90 -40.82 -0.32 9.02 16 29 H 0.05 0.70 6.55 -51.93 -0.34 0.36 16 30 H 0.09 1.45 5.88 -51.93 -0.31 1.15 16 31 H 0.35 5.30 5.40 -39.29 -0.21 5.09 16 32 H 0.13 1.09 6.36 -52.49 -0.33 0.76 16 33 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.15 2.29 6.93 -52.49 -0.36 1.93 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.65 6.64 -51.93 -0.34 0.31 16 40 H 0.05 0.61 7.00 -51.93 -0.36 0.25 16 41 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 0.90 6.34 -51.93 -0.33 0.57 16 43 H 0.08 0.73 6.40 -51.93 -0.33 0.40 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -30.29 346.28 -7.50 -37.79 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -5.29 Total: 15.30 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -2.35 Total: -4.91 kcal Atomic # 7 Polarization: -47.67 SS G_CDS: 0.21 Total: -47.46 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: -0.29 Total: -19.88 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.29 -7.50 -37.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066539873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.417 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds