Wall clock time and date at job start Tue Mar 31 2020 13:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86797 * 120.00057 * 2 1 4 4 H 1.48503 * 109.47086 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47066 * 299.99901 * 3 2 1 6 6 H 1.48493 * 109.47152 * 60.00182 * 3 2 1 7 7 C 1.38955 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07989 * 120.00089 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99467 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99892 * 179.97438 * 9 7 2 11 11 O 1.21298 * 120.00024 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00410 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47351 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00078 * 173.93131 * 13 12 10 15 15 C 1.50699 * 109.61643 * 296.64220 * 14 13 12 16 16 C 1.38251 * 119.97036 * 157.78297 * 15 14 13 17 17 C 1.38192 * 120.02059 * 179.76818 * 16 15 14 18 18 C 1.38461 * 119.97795 * 0.50368 * 17 16 15 19 19 F 1.35097 * 120.02854 * 179.77077 * 18 17 16 20 20 C 1.38456 * 119.94482 * 359.75044 * 18 17 16 21 21 C 1.38197 * 119.97612 * 359.97438 * 20 18 17 22 22 C 1.53184 * 109.53247 * 176.42126 * 14 13 12 23 23 C 1.53085 * 109.16367 * 297.09832 * 22 14 13 24 24 O 1.42904 * 109.42900 * 302.40970 * 23 22 14 25 25 C 1.42895 * 114.09641 * 61.15166 * 24 23 22 26 26 C 1.53100 * 109.41654 * 298.84514 * 25 24 23 27 27 H 0.97006 * 119.99679 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00746 * 359.97438 * 9 7 2 29 29 H 1.09000 * 109.47499 * 59.99593 * 12 10 9 30 30 H 1.09004 * 109.47072 * 300.00119 * 12 10 9 31 31 H 1.00900 * 110.99617 * 297.88554 * 13 12 10 32 32 H 1.07998 * 119.98819 * 0.02562 * 16 15 14 33 33 H 1.08002 * 120.01568 * 180.25492 * 17 16 15 34 34 H 1.08007 * 120.01223 * 179.97438 * 20 18 17 35 35 H 1.08002 * 119.98737 * 180.02562 * 21 20 18 36 36 H 1.09004 * 109.50868 * 177.19909 * 22 14 13 37 37 H 1.09000 * 109.52705 * 57.01752 * 22 14 13 38 38 H 1.09005 * 109.48078 * 182.42151 * 23 22 14 39 39 H 1.08999 * 109.48297 * 62.39994 * 23 22 14 40 40 H 1.08997 * 109.48165 * 58.82759 * 25 24 23 41 41 H 1.08998 * 109.48272 * 178.85339 * 25 24 23 42 42 H 1.08999 * 109.52088 * 177.51964 * 26 25 24 43 43 H 1.09005 * 109.51887 * 297.70445 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9971 -3.5579 0.0005 11 8 3.2101 -3.5580 0.0010 12 6 1.2436 -4.8629 0.0000 13 7 2.1982 -5.9795 0.0007 14 6 1.5036 -7.2659 0.1451 15 6 0.8067 -7.3174 1.4804 16 6 -0.2578 -8.1786 1.6710 17 6 -0.8945 -8.2302 2.8964 18 6 -0.4726 -7.4115 3.9303 19 9 -1.0973 -7.4578 5.1273 20 6 0.5902 -6.5456 3.7365 21 6 1.2291 -6.4998 2.5119 22 6 2.5187 -8.4093 0.0523 23 6 3.1642 -8.3967 -1.3357 24 8 2.1480 -8.5128 -2.3337 25 6 1.1976 -7.4458 -2.3255 26 6 0.4727 -7.4203 -0.9772 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0005 29 1 0.6172 -4.9205 -0.8902 30 1 0.6166 -4.9209 0.8897 31 1 2.7686 -5.9681 -0.8315 32 1 -0.5893 -8.8143 0.8633 33 1 -1.7235 -8.9060 3.0465 34 1 0.9200 -5.9062 4.5421 35 1 2.0585 -5.8248 2.3607 36 1 2.0105 -9.3608 0.2091 37 1 3.2878 -8.2764 0.8131 38 1 3.8562 -9.2345 -1.4224 39 1 3.7063 -7.4615 -1.4761 40 1 1.7137 -6.4981 -2.4786 41 1 0.4728 -7.5984 -3.1252 42 1 -0.2213 -6.5802 -0.9526 43 1 -0.0768 -8.3519 -0.8415 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066539873.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:38 Heat of formation + Delta-G solvation = -114.195444 kcal Electronic energy + Delta-G solvation = -27842.713150 eV Core-core repulsion = 23801.499276 eV Total energy + Delta-G solvation = -4041.213874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.88924 -41.81798 -39.92112 -39.45066 -36.86516 -35.90746 -33.39721 -32.99851 -32.33374 -31.65086 -30.76203 -28.23563 -26.22546 -25.34619 -24.63596 -23.78611 -22.71470 -21.13445 -20.09598 -19.87244 -18.73903 -18.11327 -17.59903 -17.24973 -17.01817 -16.69541 -16.56439 -16.53808 -16.16188 -15.83993 -15.75691 -15.33205 -15.26231 -14.97290 -14.46058 -14.27334 -14.06554 -13.93420 -13.63609 -13.53386 -13.30760 -13.07928 -12.99276 -12.83724 -12.58815 -12.40690 -12.25834 -12.12388 -11.88383 -11.82592 -11.51576 -11.25402 -10.52317 -10.34224 -10.02328 -10.01078 -9.52479 -9.36452 -8.47138 -5.95605 0.14392 0.30485 1.35827 1.41421 1.55228 2.04630 2.27793 2.60155 2.80122 2.93471 3.20153 3.29792 3.41247 3.54676 3.73933 3.87094 3.91889 3.99136 4.02872 4.21272 4.26238 4.33321 4.37235 4.43949 4.46568 4.54064 4.56757 4.68440 4.78617 4.86003 4.99999 5.02011 5.08345 5.10340 5.19536 5.21745 5.32714 5.40892 5.52014 5.88609 5.93825 6.07796 6.21954 6.33309 6.59348 7.12580 7.55932 8.11001 8.70457 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.010551 B = 0.004108 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.088992 B = 6814.955125 C = 8722.314544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.079 0.921 9 N -0.574 5.574 10 C 0.441 3.559 11 O -0.619 6.619 12 C 0.063 3.937 13 N -0.663 5.663 14 C 0.158 3.842 15 C -0.082 4.082 16 C -0.080 4.080 17 C -0.149 4.149 18 C 0.078 3.922 19 F -0.151 7.151 20 C -0.167 4.167 21 C -0.078 4.078 22 C -0.131 4.131 23 C 0.054 3.946 24 O -0.391 6.391 25 C 0.056 3.944 26 C -0.182 4.182 27 H 0.277 0.723 28 H 0.395 0.605 29 H 0.067 0.933 30 H 0.097 0.903 31 H 0.347 0.653 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.132 0.868 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.035 0.965 41 H 0.113 0.887 42 H 0.080 0.920 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.649 -19.747 0.310 20.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.815 3.185 4 H -0.198 1.198 5 H -0.196 1.196 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.097 0.903 9 N -0.211 5.211 10 C 0.228 3.772 11 O -0.505 6.505 12 C -0.070 4.070 13 N -0.296 5.296 14 C 0.067 3.933 15 C -0.083 4.083 16 C -0.098 4.098 17 C -0.168 4.168 18 C 0.059 3.941 19 F -0.129 7.129 20 C -0.186 4.186 21 C -0.096 4.096 22 C -0.169 4.169 23 C -0.023 4.023 24 O -0.309 6.309 25 C -0.020 4.020 26 C -0.221 4.221 27 H 0.086 0.914 28 H 0.228 0.772 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.176 0.824 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.113 0.887 37 H 0.099 0.901 38 H 0.133 0.867 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.847 -19.677 0.889 19.902 hybrid contribution -0.500 1.536 -0.136 1.621 sum -3.347 -18.141 0.753 18.462 Atomic orbital electron populations 1.69680 1.06835 1.29174 1.50486 1.26010 0.96492 1.02345 0.96337 0.84895 0.78085 0.77245 0.78280 1.19761 1.19581 1.19771 1.19685 0.92665 0.83971 1.49728 0.90280 1.41935 1.09249 1.04765 1.65143 1.20800 0.88231 0.85963 0.82211 1.90498 1.15668 1.87932 1.56430 1.21570 0.94209 0.88342 1.02843 1.60147 1.22509 1.00368 1.46604 1.19834 0.92857 0.89351 0.91245 1.19807 0.96542 0.97138 0.94804 1.21139 0.93758 0.97849 0.97026 1.21340 1.02602 1.00543 0.92314 1.17962 0.94575 0.99783 0.81794 1.91465 1.81567 1.95729 1.44168 1.21297 0.97141 1.00667 0.99454 1.21028 0.99153 0.97965 0.91461 1.22203 0.98810 0.97522 0.98325 1.22744 0.90065 1.02703 0.86745 1.87916 1.40547 1.47172 1.55310 1.22656 0.91769 0.89766 0.97854 1.22988 0.99218 1.04900 0.95033 0.91357 0.77171 0.91539 0.88460 0.83114 0.82144 0.82422 0.85002 0.85612 0.88658 0.90130 0.86669 0.93726 0.94631 0.86917 0.90175 0.87942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 3 Si 0.99 42.87 29.55 68.60 2.03 44.89 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 8 H 0.08 4.77 7.16 -2.92 -0.02 4.75 16 9 N -0.57 -29.14 5.29 -306.98 -1.62 -30.77 16 10 C 0.44 20.47 7.84 87.66 0.69 21.15 16 11 O -0.62 -33.45 15.91 -3.09 -0.05 -33.50 16 12 C 0.06 2.07 4.86 85.56 0.42 2.49 16 13 N -0.66 -19.18 4.50 -477.27 -2.15 -21.32 16 14 C 0.16 3.36 0.53 2.90 0.00 3.36 16 15 C -0.08 -1.80 4.07 -19.86 -0.08 -1.88 16 16 C -0.08 -1.38 9.15 22.26 0.20 -1.18 16 17 C -0.15 -2.78 10.03 22.31 0.22 -2.55 16 18 C 0.08 1.86 7.30 22.38 0.16 2.02 16 19 F -0.15 -3.82 17.27 44.97 0.78 -3.04 16 20 C -0.17 -4.31 10.03 22.31 0.22 -4.09 16 21 C -0.08 -2.07 7.71 22.26 0.17 -1.90 16 22 C -0.13 -2.40 5.10 30.68 0.16 -2.25 16 23 C 0.05 1.02 6.58 72.01 0.47 1.49 16 24 O -0.39 -8.20 10.77 -148.98 -1.60 -9.81 16 25 C 0.06 1.09 6.58 72.02 0.47 1.56 16 26 C -0.18 -3.25 4.12 30.69 0.13 -3.13 16 27 H 0.28 13.95 8.31 -92.70 -0.77 13.18 16 28 H 0.39 19.21 7.90 -92.71 -0.73 18.48 16 29 H 0.07 1.95 6.55 -2.39 -0.02 1.93 16 30 H 0.10 3.12 5.88 -2.38 -0.01 3.11 16 31 H 0.35 10.58 5.40 -89.69 -0.48 10.09 16 32 H 0.16 1.83 6.36 -2.91 -0.02 1.81 16 33 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 34 H 0.13 3.31 8.06 -2.91 -0.02 3.28 16 35 H 0.13 4.00 6.93 -2.91 -0.02 3.98 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.12 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.04 0.97 6.64 -2.39 -0.02 0.96 16 40 H 0.04 0.81 7.00 -2.39 -0.02 0.79 16 41 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.08 1.50 6.34 -2.39 -0.02 1.49 16 43 H 0.10 1.40 6.40 -2.38 -0.02 1.39 16 Total: -1.00 -66.36 346.28 2.04 -64.32 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.14 Total: 41.45 kcal Atomic # 6 Polarization: -7.45 SS G_CDS: 4.52 Total: -2.93 kcal Atomic # 7 Polarization: -97.90 SS G_CDS: -3.49 Total: -101.39 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -1.65 Total: -43.30 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.78 Total: -3.04 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -66.36 2.04 -64.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066539873.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.874 kcal (2) G-P(sol) polarization free energy of solvation -66.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds