Wall clock time and date at job start Tue Mar 31 2020 13:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48504 * 109.46882 * 240.00446 * 3 2 1 5 5 H 1.48499 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47361 * 120.00665 * 3 2 1 7 7 C 1.37878 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99937 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99845 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99857 * 359.97438 * 11 10 9 13 13 C 1.50693 * 119.99901 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47529 * 173.80378 * 13 11 10 15 15 C 1.47006 * 110.99651 * 293.64073 * 14 13 11 16 16 C 1.53099 * 109.25604 * 177.60421 * 15 14 13 17 17 O 1.43018 * 109.29580 * 56.82282 * 16 15 14 18 18 C 1.43018 * 113.73869 * 301.40287 * 17 16 15 19 19 H 1.09000 * 109.46659 * 298.66518 * 18 17 16 20 20 C 1.50697 * 109.50584 * 178.55449 * 18 17 16 21 21 C 1.38217 * 120.01589 * 334.89557 * 20 18 17 22 22 C 1.38222 * 120.02544 * 179.72049 * 21 20 18 23 23 C 1.38270 * 120.05190 * 0.56060 * 22 21 20 24 24 C 1.38175 * 120.02296 * 359.71671 * 23 22 21 25 25 C 1.38439 * 120.01009 * 155.17584 * 20 18 17 26 26 F 1.35102 * 120.02615 * 359.97438 * 25 20 18 27 27 C 1.47012 * 111.00338 * 169.99841 * 14 13 11 28 28 H 0.97006 * 119.99701 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47223 * 60.00247 * 9 7 2 30 30 H 1.09004 * 109.47490 * 300.00568 * 9 7 2 31 31 H 0.96998 * 120.00060 * 0.02562 * 10 9 7 32 32 H 1.09001 * 109.47443 * 53.80252 * 13 11 10 33 33 H 1.09005 * 109.47250 * 293.80088 * 13 11 10 34 34 H 1.09004 * 109.51156 * 57.67046 * 15 14 13 35 35 H 1.09000 * 109.50843 * 297.53381 * 15 14 13 36 36 H 1.09001 * 109.51027 * 176.78278 * 16 15 14 37 37 H 1.09001 * 109.50891 * 296.86732 * 16 15 14 38 38 H 1.08002 * 119.98484 * 0.02562 * 21 20 18 39 39 H 1.07999 * 119.97404 * 180.25321 * 22 21 20 40 40 H 1.07990 * 119.99004 * 179.74316 * 23 22 21 41 41 H 1.08001 * 120.01243 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.51051 * 302.33367 * 27 14 13 43 43 H 1.09008 * 109.50148 * 62.41466 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2123 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5611 -5.1049 -0.0011 13 6 2.7328 -6.0288 -0.0005 14 7 2.0044 -7.2958 0.1483 15 6 1.3695 -7.3863 1.4711 16 6 0.5740 -8.6913 1.5612 17 8 1.4458 -9.7950 1.3024 18 6 2.0815 -9.7388 0.0225 19 1 1.3237 -9.7585 -0.7607 20 6 3.0006 -10.9226 -0.1353 21 6 3.5263 -11.5436 0.9820 22 6 4.3646 -12.6330 0.8376 23 6 4.6877 -13.0957 -0.4247 24 6 4.1679 -12.4729 -1.5432 25 6 3.3233 -11.3849 -1.3997 26 9 2.8141 -10.7755 -2.4927 27 6 2.8923 -8.4444 -0.0832 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 3.1566 -3.4356 -0.0002 32 1 3.4296 -5.9108 0.8294 33 1 3.2849 -6.0354 -0.9403 34 1 0.6972 -6.5398 1.6109 35 1 2.1372 -7.3739 2.2449 36 1 0.1485 -8.7900 2.5599 37 1 -0.2281 -8.6803 0.8233 38 1 3.2779 -11.1805 1.9684 39 1 4.7717 -13.1202 1.7114 40 1 5.3461 -13.9444 -0.5364 41 1 4.4200 -12.8347 -2.5291 42 1 3.3316 -8.3703 -1.0780 43 1 3.6848 -8.4484 0.6653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066846547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:04 Heat of formation + Delta-G solvation = -91.490661 kcal Electronic energy + Delta-G solvation = -26638.851184 eV Core-core repulsion = 22598.621864 eV Total energy + Delta-G solvation = -4040.229320 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.16420 -40.28270 -39.13989 -38.33499 -35.53933 -34.12020 -33.12745 -32.34287 -30.89072 -29.84297 -29.18448 -27.13643 -25.09450 -24.32808 -23.09208 -22.49504 -21.76694 -20.44940 -19.67049 -17.99399 -17.22515 -17.00801 -16.71313 -16.10754 -15.96060 -15.74450 -15.47386 -15.35059 -15.13043 -14.83667 -14.47081 -14.39338 -14.18920 -14.03474 -13.49689 -13.42376 -13.05598 -12.70832 -12.56389 -12.29704 -12.14172 -11.93112 -11.81968 -11.56830 -11.31318 -11.13035 -11.00655 -10.86275 -10.67583 -10.32666 -9.97004 -9.42549 -9.30878 -9.08402 -8.91112 -8.74060 -8.34470 -7.88012 -6.17706 -4.24843 0.76701 0.87635 3.18151 3.24208 3.29038 3.30435 3.35105 3.43394 3.53820 3.96395 4.20014 4.37446 4.38959 4.52396 4.60491 4.74430 4.89029 4.94444 4.97243 5.06669 5.14608 5.18264 5.27911 5.40270 5.45204 5.48657 5.53778 5.56599 5.63107 5.70582 5.77592 5.88865 5.93893 6.05097 6.07046 6.53024 6.80767 6.87176 7.03719 7.30295 7.42882 7.50665 7.65835 7.95936 8.61556 8.77379 9.09988 9.41842 10.92380 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.002229 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.362664 B =12559.559360 C =12902.376306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.715 5.715 11 C 0.499 3.501 12 O -0.538 6.538 13 C 0.036 3.964 14 N -0.516 5.516 15 C 0.014 3.986 16 C 0.068 3.932 17 O -0.380 6.380 18 C 0.139 3.861 19 H 0.082 0.918 20 C -0.115 4.115 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.156 4.156 25 C 0.109 3.891 26 F -0.134 7.134 27 C 0.032 3.968 28 H 0.267 0.733 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.390 0.610 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.038 0.962 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.136 0.864 42 H 0.086 0.914 43 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.486 -26.026 1.577 28.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.364 5.364 11 C 0.282 3.718 12 O -0.416 6.416 13 C -0.095 4.095 14 N -0.241 5.241 15 C -0.114 4.114 16 C -0.008 4.008 17 O -0.299 6.299 18 C 0.081 3.919 19 H 0.100 0.900 20 C -0.116 4.116 21 C -0.083 4.083 22 C -0.152 4.152 23 C -0.109 4.109 24 C -0.175 4.175 25 C 0.090 3.910 26 F -0.113 7.113 27 C -0.096 4.096 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.222 0.778 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.056 0.944 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.105 0.895 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.064 -26.149 1.309 27.706 hybrid contribution 1.461 1.455 0.158 2.068 sum 10.525 -24.693 1.467 26.883 Atomic orbital electron populations 1.69966 1.06100 1.27426 1.48745 1.24956 0.94928 0.99455 0.94697 0.86469 0.79412 0.82308 0.78679 1.20054 1.21058 1.20092 1.21187 0.93212 0.90485 1.53389 0.91981 1.19082 0.88248 0.81852 0.97696 1.46467 1.11111 1.06083 1.72720 1.20238 0.89522 0.84024 0.77968 1.90643 1.16542 1.84578 1.49820 1.22042 0.95324 0.89239 1.02929 1.61796 1.31193 1.00468 1.30602 1.22946 0.99212 1.00553 0.88674 1.22693 0.91934 0.84132 1.02071 1.87902 1.61764 1.45916 1.34355 1.20660 0.93300 0.90635 0.87348 0.90040 1.19649 1.00833 0.98886 0.92273 1.20961 0.94299 0.94311 0.98682 1.21261 0.99000 0.97234 0.97692 1.21052 0.98747 0.99298 0.91823 1.21118 0.99410 0.96278 1.00687 1.17484 0.97330 0.94013 0.82221 1.91530 1.85366 1.82093 1.52264 1.22723 0.94402 0.90172 1.02305 0.92376 0.95521 0.95622 0.77816 0.92343 0.88080 0.87433 0.94415 0.88043 0.91686 0.84283 0.85224 0.85025 0.84564 0.89515 0.93734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 8 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 9 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 10 N -0.71 -14.86 5.55 -61.47 -0.34 -15.20 16 11 C 0.50 9.82 7.40 -10.99 -0.08 9.74 16 12 O -0.54 -12.71 14.67 5.55 0.08 -12.63 16 13 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 14 N -0.52 -7.52 4.42 -235.75 -1.04 -8.56 16 15 C 0.01 0.20 5.30 -3.72 -0.02 0.18 16 16 C 0.07 0.83 7.01 37.21 0.26 1.09 16 17 O -0.38 -4.67 9.31 -35.23 -0.33 -5.00 16 18 C 0.14 1.66 2.79 -27.84 -0.08 1.58 16 19 H 0.08 1.07 7.80 -51.93 -0.40 0.66 16 20 C -0.11 -1.21 5.08 -104.56 -0.53 -1.74 16 21 C -0.06 -0.58 9.35 -39.59 -0.37 -0.95 16 22 C -0.13 -0.94 10.04 -39.58 -0.40 -1.34 16 23 C -0.09 -0.60 10.04 -39.59 -0.40 -1.00 16 24 C -0.16 -1.24 10.03 -39.51 -0.40 -1.63 16 25 C 0.11 1.11 7.24 -39.42 -0.29 0.82 16 26 F -0.13 -1.55 16.57 2.25 0.04 -1.51 16 27 C 0.03 0.39 4.91 -3.71 -0.02 0.37 16 28 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.39 6.89 8.32 -40.82 -0.34 6.55 16 32 H 0.06 0.74 8.12 -51.93 -0.42 0.31 16 33 H 0.10 1.28 8.04 -51.93 -0.42 0.86 16 34 H 0.11 1.79 6.10 -51.93 -0.32 1.47 16 35 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.14 1.21 7.35 -52.49 -0.39 0.82 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.13 0.52 8.06 -52.49 -0.42 0.09 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 42 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 43 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 LS Contribution 362.23 15.07 5.46 5.46 Total: -1.00 -32.58 362.23 -9.25 -41.83 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.05 Total: 4.28 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -2.79 Total: 0.87 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: -0.65 Total: -49.06 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.25 Total: -17.63 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.58 -9.25 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066846547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.658 kcal (2) G-P(sol) polarization free energy of solvation -32.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds