Wall clock time and date at job start Tue Mar 31 2020 13:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48504 * 109.46882 * 240.00446 * 3 2 1 5 5 H 1.48499 * 109.47109 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47361 * 120.00665 * 3 2 1 7 7 C 1.37878 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99937 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99845 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99857 * 359.97438 * 11 10 9 13 13 C 1.50693 * 119.99901 * 180.02562 * 11 10 9 14 14 N 1.46905 * 109.47529 * 173.80378 * 13 11 10 15 15 C 1.47006 * 110.99651 * 293.64073 * 14 13 11 16 16 C 1.53099 * 109.25604 * 177.60421 * 15 14 13 17 17 O 1.43018 * 109.29580 * 56.82282 * 16 15 14 18 18 C 1.43018 * 113.73869 * 301.40287 * 17 16 15 19 19 H 1.09000 * 109.46659 * 298.66518 * 18 17 16 20 20 C 1.50697 * 109.50584 * 178.55449 * 18 17 16 21 21 C 1.38217 * 120.01589 * 334.89557 * 20 18 17 22 22 C 1.38222 * 120.02544 * 179.72049 * 21 20 18 23 23 C 1.38270 * 120.05190 * 0.56060 * 22 21 20 24 24 C 1.38175 * 120.02296 * 359.71671 * 23 22 21 25 25 C 1.38439 * 120.01009 * 155.17584 * 20 18 17 26 26 F 1.35102 * 120.02615 * 359.97438 * 25 20 18 27 27 C 1.47012 * 111.00338 * 169.99841 * 14 13 11 28 28 H 0.97006 * 119.99701 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47223 * 60.00247 * 9 7 2 30 30 H 1.09004 * 109.47490 * 300.00568 * 9 7 2 31 31 H 0.96998 * 120.00060 * 0.02562 * 10 9 7 32 32 H 1.09001 * 109.47443 * 53.80252 * 13 11 10 33 33 H 1.09005 * 109.47250 * 293.80088 * 13 11 10 34 34 H 1.09004 * 109.51156 * 57.67046 * 15 14 13 35 35 H 1.09000 * 109.50843 * 297.53381 * 15 14 13 36 36 H 1.09001 * 109.51027 * 176.78278 * 16 15 14 37 37 H 1.09001 * 109.50891 * 296.86732 * 16 15 14 38 38 H 1.08002 * 119.98484 * 0.02562 * 21 20 18 39 39 H 1.07999 * 119.97404 * 180.25321 * 22 21 20 40 40 H 1.07990 * 119.99004 * 179.74316 * 23 22 21 41 41 H 1.08001 * 120.01243 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.51051 * 302.33367 * 27 14 13 43 43 H 1.09008 * 109.50148 * 62.41466 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1028 1.6963 -1.2126 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2123 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6128 -0.0005 11 6 1.7536 -4.8834 -0.0011 12 8 0.5611 -5.1049 -0.0011 13 6 2.7328 -6.0288 -0.0005 14 7 2.0044 -7.2958 0.1483 15 6 1.3695 -7.3863 1.4711 16 6 0.5740 -8.6913 1.5612 17 8 1.4458 -9.7950 1.3024 18 6 2.0815 -9.7388 0.0225 19 1 1.3237 -9.7585 -0.7607 20 6 3.0006 -10.9226 -0.1353 21 6 3.5263 -11.5436 0.9820 22 6 4.3646 -12.6330 0.8376 23 6 4.6877 -13.0957 -0.4247 24 6 4.1679 -12.4729 -1.5432 25 6 3.3233 -11.3849 -1.3997 26 9 2.8141 -10.7755 -2.4927 27 6 2.8923 -8.4444 -0.0832 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6245 -2.5571 0.8896 31 1 3.1566 -3.4356 -0.0002 32 1 3.4296 -5.9108 0.8294 33 1 3.2849 -6.0354 -0.9403 34 1 0.6972 -6.5398 1.6109 35 1 2.1372 -7.3739 2.2449 36 1 0.1485 -8.7900 2.5599 37 1 -0.2281 -8.6803 0.8233 38 1 3.2779 -11.1805 1.9684 39 1 4.7717 -13.1202 1.7114 40 1 5.3461 -13.9444 -0.5364 41 1 4.4200 -12.8347 -2.5291 42 1 3.3316 -8.3703 -1.0780 43 1 3.6848 -8.4484 0.6653 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066846547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:03 Heat of formation + Delta-G solvation = -114.674481 kcal Electronic energy + Delta-G solvation = -26639.856510 eV Core-core repulsion = 22598.621864 eV Total energy + Delta-G solvation = -4041.234646 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.94421 -41.32068 -40.35344 -39.37006 -36.74598 -36.00463 -34.35758 -33.92548 -31.50154 -30.95407 -30.34930 -28.87116 -26.30757 -25.33522 -24.40536 -23.65404 -22.67928 -21.46521 -21.33273 -19.01873 -18.65381 -17.89465 -17.64875 -17.56367 -17.04539 -16.92820 -16.69478 -16.61640 -16.24102 -16.09447 -15.66607 -15.60413 -15.36315 -14.98598 -14.75777 -14.33694 -14.17965 -14.11895 -13.93669 -13.68509 -13.34795 -13.05808 -12.93546 -12.88540 -12.69658 -12.45273 -12.39861 -12.23925 -11.90972 -11.67484 -11.51892 -11.02753 -10.79680 -10.63852 -9.91721 -9.82874 -9.64204 -9.44343 -8.29693 -6.46500 0.12842 0.26904 1.42437 1.46537 1.54738 1.75773 2.18134 2.39798 2.48644 2.67528 2.90543 3.04967 3.29593 3.59221 3.75625 3.80823 3.92234 3.93744 4.05328 4.10950 4.16486 4.24490 4.32404 4.40565 4.41546 4.49603 4.52176 4.68870 4.79722 4.84412 4.94929 5.09937 5.11825 5.21051 5.23657 5.38803 5.47557 5.48819 5.64725 5.75921 5.83738 5.84698 5.94035 6.05337 6.64309 6.92496 7.22904 7.50282 8.82172 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027381 B = 0.002229 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.362664 B =12559.559360 C =12902.376306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.557 4.557 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.709 5.709 11 C 0.496 3.504 12 O -0.583 6.583 13 C 0.050 3.950 14 N -0.540 5.540 15 C 0.017 3.983 16 C 0.072 3.928 17 O -0.379 6.379 18 C 0.140 3.860 19 H 0.060 0.940 20 C -0.131 4.131 21 C -0.074 4.074 22 C -0.127 4.127 23 C -0.083 4.083 24 C -0.157 4.157 25 C 0.084 3.916 26 F -0.150 7.150 27 C 0.040 3.960 28 H 0.269 0.731 29 H -0.015 1.015 30 H -0.013 1.013 31 H 0.408 0.592 32 H 0.089 0.911 33 H 0.127 0.873 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.125 0.875 37 H 0.049 0.951 38 H 0.139 0.861 39 H 0.158 0.842 40 H 0.166 0.834 41 H 0.153 0.847 42 H 0.092 0.908 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.059 -27.421 2.136 30.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.595 4.595 8 H 0.102 0.898 9 C 0.147 3.853 10 N -0.360 5.360 11 C 0.282 3.718 12 O -0.463 6.463 13 C -0.081 4.081 14 N -0.265 5.265 15 C -0.111 4.111 16 C -0.005 4.005 17 O -0.298 6.298 18 C 0.081 3.919 19 H 0.078 0.922 20 C -0.133 4.133 21 C -0.092 4.092 22 C -0.145 4.145 23 C -0.101 4.101 24 C -0.175 4.175 25 C 0.065 3.935 26 F -0.129 7.129 27 C -0.088 4.088 28 H 0.077 0.923 29 H 0.003 0.997 30 H 0.005 0.995 31 H 0.244 0.756 32 H 0.107 0.893 33 H 0.145 0.855 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.143 0.857 37 H 0.068 0.932 38 H 0.157 0.843 39 H 0.176 0.824 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.110 0.890 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.689 -27.582 1.868 30.418 hybrid contribution 0.321 1.752 -0.014 1.782 sum 13.010 -25.829 1.854 28.980 Atomic orbital electron populations 1.70136 1.08276 1.28616 1.49893 1.26084 0.95793 1.03955 0.93877 0.85202 0.77900 0.76576 0.79510 1.18673 1.21150 1.18593 1.21593 0.94311 0.90585 1.52971 0.89789 1.18498 0.88631 0.84257 0.93962 1.46189 1.11210 1.05462 1.73143 1.21220 0.89909 0.84660 0.75975 1.90628 1.19079 1.85229 1.51379 1.21961 0.93814 0.86862 1.05463 1.61730 1.32438 1.01219 1.31125 1.22846 0.99138 1.00071 0.89001 1.22690 0.91320 0.83550 1.02917 1.87906 1.61684 1.45675 1.34543 1.20610 0.93132 0.91660 0.86461 0.92246 1.19587 1.01553 0.99011 0.93103 1.21071 0.94935 0.95117 0.98078 1.21613 0.97699 0.96142 0.99056 1.21473 0.98103 0.99521 0.91003 1.21417 0.98531 0.95339 1.02248 1.17788 0.98706 0.95261 0.81740 1.91485 1.85838 1.82591 1.52957 1.22706 0.94143 0.88970 1.02935 0.92262 0.99694 0.99489 0.75629 0.89327 0.85520 0.90675 0.92999 0.85734 0.93249 0.84302 0.82450 0.81695 0.82895 0.89007 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.44 13.29 21.45 0.28 -56.16 16 2 C 0.00 0.14 5.46 84.66 0.46 0.60 16 3 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 5 H -0.29 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.56 -30.31 9.28 25.60 0.24 -30.07 16 8 H 0.08 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.27 14.86 5.43 85.63 0.46 15.32 16 10 N -0.71 -29.88 5.55 -466.78 -2.59 -32.47 16 11 C 0.50 19.89 7.40 87.66 0.65 20.54 16 12 O -0.58 -29.02 14.67 -3.05 -0.04 -29.06 16 13 C 0.05 1.37 5.45 85.55 0.47 1.84 16 14 N -0.54 -15.57 4.42 -899.79 -3.98 -19.55 16 15 C 0.02 0.49 5.30 86.32 0.46 0.95 16 16 C 0.07 1.77 7.01 72.02 0.50 2.28 16 17 O -0.38 -9.20 9.31 -148.98 -1.39 -10.59 16 18 C 0.14 3.33 2.79 29.88 0.08 3.42 16 19 H 0.06 1.65 7.80 -2.39 -0.02 1.63 16 20 C -0.13 -2.65 5.08 -19.82 -0.10 -2.75 16 21 C -0.07 -1.19 9.35 22.26 0.21 -0.98 16 22 C -0.13 -1.36 10.04 22.27 0.22 -1.14 16 23 C -0.08 -0.79 10.04 22.26 0.22 -0.57 16 24 C -0.16 -2.14 10.03 22.31 0.22 -1.91 16 25 C 0.08 1.66 7.24 22.38 0.16 1.82 16 26 F -0.15 -3.52 16.57 44.97 0.75 -2.77 16 27 C 0.04 0.93 4.91 86.31 0.42 1.35 16 28 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 29 H -0.01 -0.93 8.14 -2.39 -0.02 -0.95 16 30 H -0.01 -0.80 8.14 -2.38 -0.02 -0.81 16 31 H 0.41 14.00 8.32 -92.71 -0.77 13.23 16 32 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 33 H 0.13 2.90 8.04 -2.38 -0.02 2.88 16 34 H 0.07 2.63 6.10 -2.38 -0.01 2.62 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.14 2.17 7.35 -2.91 -0.02 2.15 16 39 H 0.16 0.80 8.06 -2.91 -0.02 0.77 16 40 H 0.17 0.48 8.06 -2.92 -0.02 0.46 16 41 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 42 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 43 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -74.79 362.23 0.00 -74.78 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.26 Total: 20.79 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 4.69 Total: 10.69 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -6.28 Total: -108.17 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -1.43 Total: -39.65 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.75 Total: -2.77 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -74.79 0.00 -74.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066846547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.892 kcal (2) G-P(sol) polarization free energy of solvation -74.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds