Wall clock time and date at job start Tue Mar 31 2020 13:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48506 * 109.46786 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47298 * 29.99751 * 3 2 1 6 6 H 1.48490 * 109.47372 * 150.00511 * 3 2 1 7 7 C 1.37871 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99799 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00101 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99714 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00150 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99783 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47053 * 180.02562 * 13 11 10 15 15 C 1.47009 * 110.99824 * 66.37017 * 14 13 11 16 16 C 1.53104 * 109.25749 * 182.39279 * 15 14 13 17 17 O 1.43009 * 109.25680 * 303.15031 * 16 15 14 18 18 C 1.43016 * 113.73966 * 58.66667 * 17 16 15 19 19 H 1.09001 * 109.53593 * 61.29123 * 18 17 16 20 20 C 1.50697 * 109.50495 * 181.39341 * 18 17 16 21 21 C 1.38225 * 120.01590 * 24.78963 * 20 18 17 22 22 C 1.38217 * 120.02811 * 179.97438 * 21 20 18 23 23 C 1.38275 * 120.05337 * 359.95316 * 22 21 20 24 24 C 1.38176 * 120.02246 * 0.02562 * 23 22 21 25 25 C 1.38443 * 120.01481 * 204.76062 * 20 18 17 26 26 F 1.35099 * 120.02154 * 0.02562 * 25 20 18 27 27 C 1.47016 * 110.99779 * 190.00244 * 14 13 11 28 28 H 0.97003 * 120.00435 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46878 * 59.99782 * 9 7 2 30 30 H 1.08999 * 109.47212 * 299.99987 * 9 7 2 31 31 H 0.96994 * 120.00374 * 0.02562 * 10 9 7 32 32 H 1.09002 * 109.47065 * 60.00615 * 13 11 10 33 33 H 1.08999 * 109.47486 * 300.00537 * 13 11 10 34 34 H 1.09009 * 109.50812 * 302.32296 * 15 14 13 35 35 H 1.08994 * 109.51173 * 62.45374 * 15 14 13 36 36 H 1.08999 * 109.50246 * 63.08743 * 16 15 14 37 37 H 1.09001 * 109.50317 * 183.16814 * 16 15 14 38 38 H 1.08000 * 119.98148 * 359.97189 * 21 20 18 39 39 H 1.07997 * 119.97688 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.98945 * 179.74973 * 23 22 21 41 41 H 1.08002 * 120.01117 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.50501 * 57.67658 * 27 14 13 43 43 H 1.08994 * 109.50614 * 297.54278 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1131 -1.8995 -0.0025 13 6 5.8274 -4.2421 -0.0024 14 7 7.2965 -4.2420 -0.0029 15 6 7.8236 -3.6922 1.2545 16 6 9.3528 -3.6553 1.1876 17 8 9.8453 -4.9717 0.9239 18 6 9.3523 -5.5376 -0.2936 19 1 9.6657 -4.9204 -1.1356 20 6 9.9016 -6.9311 -0.4593 21 6 10.2953 -7.6556 0.6501 22 6 10.7986 -8.9339 0.4985 23 6 10.9080 -9.4900 -0.7628 24 6 10.5147 -8.7678 -1.8732 25 6 10.0115 -7.4865 -1.7226 26 9 9.6270 -6.7794 -2.8077 27 6 7.8233 -5.5936 -0.2417 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8888 30 1 3.8745 -0.6799 -0.8911 31 1 3.3697 -3.3124 -0.0010 32 1 5.4635 -4.7558 -0.8923 33 1 5.4647 -4.7561 0.8877 34 1 7.4412 -2.6816 1.3985 35 1 7.5108 -4.3224 2.0869 36 1 9.6660 -2.9826 0.3892 37 1 9.7502 -3.3010 2.1388 38 1 10.2096 -7.2226 1.6358 39 1 11.1063 -9.4991 1.3658 40 1 11.3052 -10.4873 -0.8804 41 1 10.6006 -9.2022 -2.8583 42 1 7.4405 -5.9711 -1.1900 43 1 7.5104 -6.2543 0.5667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066846548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:07 Heat of formation + Delta-G solvation = -87.466024 kcal Electronic energy + Delta-G solvation = -26705.723742 eV Core-core repulsion = 22665.668943 eV Total energy + Delta-G solvation = -4040.054799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.19150 -40.33793 -39.23308 -38.43600 -35.61714 -34.25054 -33.15910 -32.38556 -30.91448 -29.92634 -29.37158 -27.63190 -25.16930 -24.36724 -23.09375 -22.26953 -21.64630 -20.49468 -19.88907 -18.02221 -17.37436 -17.04401 -16.76734 -16.23928 -16.06951 -15.83634 -15.61017 -15.41835 -15.18714 -14.84887 -14.57773 -14.43623 -14.24936 -13.91761 -13.61789 -13.45108 -13.12574 -12.79430 -12.68085 -12.49873 -12.34018 -12.13859 -11.93750 -11.62881 -11.41482 -11.19498 -11.02279 -10.79436 -10.69759 -10.03102 -9.98730 -9.51900 -9.35802 -9.18077 -8.96532 -8.79567 -8.42450 -8.15116 -6.23237 -4.25706 0.74269 0.85400 3.14871 3.18957 3.26036 3.32018 3.38609 3.40360 3.47129 3.93843 4.13832 4.31890 4.34734 4.49233 4.58076 4.70389 4.84861 4.91276 4.93191 5.03255 5.09510 5.12247 5.22891 5.34345 5.38742 5.42875 5.45256 5.51596 5.58362 5.67820 5.74811 5.84906 5.90196 6.02099 6.04632 6.50688 6.69507 6.81501 6.84699 6.99309 7.05125 7.20800 7.37115 8.11837 8.49099 8.73403 8.91621 9.36783 10.88655 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.002341 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.550755 B =11959.545361 C =12313.568614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.077 3.923 3 Si 0.878 3.122 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.222 3.778 10 N -0.707 5.707 11 C 0.502 3.498 12 O -0.542 6.542 13 C 0.036 3.964 14 N -0.517 5.517 15 C 0.011 3.989 16 C 0.068 3.932 17 O -0.380 6.380 18 C 0.139 3.861 19 H 0.081 0.919 20 C -0.116 4.116 21 C -0.064 4.064 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.156 4.156 25 C 0.109 3.891 26 F -0.134 7.134 27 C 0.032 3.968 28 H 0.268 0.732 29 H 0.024 0.976 30 H 0.021 0.979 31 H 0.396 0.604 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.111 0.889 35 H 0.038 0.962 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.087 0.913 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.130 -19.704 0.909 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.100 3.900 10 N -0.356 5.356 11 C 0.286 3.714 12 O -0.420 6.420 13 C -0.095 4.095 14 N -0.242 5.242 15 C -0.116 4.116 16 C -0.008 4.008 17 O -0.299 6.299 18 C 0.081 3.919 19 H 0.099 0.901 20 C -0.117 4.117 21 C -0.082 4.082 22 C -0.152 4.152 23 C -0.109 4.109 24 C -0.175 4.175 25 C 0.090 3.910 26 F -0.113 7.113 27 C -0.096 4.096 28 H 0.078 0.922 29 H 0.042 0.958 30 H 0.039 0.961 31 H 0.229 0.771 32 H 0.121 0.879 33 H 0.080 0.920 34 H 0.129 0.871 35 H 0.056 0.944 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.157 0.843 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.105 0.895 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 22.765 -18.647 0.608 29.433 hybrid contribution -0.672 0.238 0.206 0.742 sum 22.093 -18.408 0.814 28.769 Atomic orbital electron populations 1.69879 1.06217 1.27450 1.49397 1.24804 0.94802 0.99207 0.93859 0.86804 0.80520 0.83196 0.79079 1.19824 1.20912 1.18536 1.21090 0.88534 0.95217 1.53357 0.90271 1.19476 0.95200 0.78571 0.96748 1.46175 1.05592 1.11095 1.72734 1.20289 0.83115 0.90457 0.77522 1.90612 1.55266 1.45993 1.50119 1.22013 0.88279 0.96147 1.03072 1.61811 1.06450 1.20472 1.35422 1.23008 0.96048 1.03079 0.89502 1.22689 0.92574 0.83521 1.02036 1.87902 1.70033 1.31628 1.40353 1.20655 0.91912 0.90537 0.88802 0.90073 1.19646 1.03497 0.96257 0.92308 1.20959 0.95316 0.93247 0.98726 1.21264 1.00588 0.95634 0.97690 1.21059 0.98111 0.99835 0.91877 1.21121 1.02340 0.93265 1.00751 1.17482 1.00166 0.91030 0.82370 1.91528 1.88701 1.78120 1.52917 1.22730 0.94653 0.90038 1.02225 0.92245 0.95782 0.96121 0.77066 0.87925 0.91982 0.87078 0.94427 0.91770 0.88069 0.84283 0.85209 0.85003 0.84546 0.89459 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.42 13.96 55.43 0.77 -25.64 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.08 16 3 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.54 -14.84 9.83 -34.44 -0.34 -15.18 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.22 5.42 4.50 -5.19 -0.02 5.39 16 10 N -0.71 -14.03 5.55 -61.47 -0.34 -14.38 16 11 C 0.50 9.33 7.54 -10.99 -0.08 9.25 16 12 O -0.54 -11.94 14.35 5.56 0.08 -11.86 16 13 C 0.04 0.50 5.45 -4.97 -0.03 0.47 16 14 N -0.52 -7.18 4.46 -235.75 -1.05 -8.23 16 15 C 0.01 0.15 5.29 -3.71 -0.02 0.13 16 16 C 0.07 0.79 7.01 37.21 0.26 1.05 16 17 O -0.38 -4.51 9.30 -35.23 -0.33 -4.83 16 18 C 0.14 1.60 2.79 -27.84 -0.08 1.52 16 19 H 0.08 1.02 7.80 -51.93 -0.40 0.62 16 20 C -0.12 -1.18 5.08 -104.55 -0.53 -1.71 16 21 C -0.06 -0.56 9.35 -39.59 -0.37 -0.93 16 22 C -0.13 -0.91 10.04 -39.58 -0.40 -1.31 16 23 C -0.09 -0.58 10.04 -39.59 -0.40 -0.98 16 24 C -0.16 -1.21 10.03 -39.51 -0.40 -1.60 16 25 C 0.11 1.08 7.24 -39.42 -0.29 0.80 16 26 F -0.13 -1.51 16.57 2.25 0.04 -1.47 16 27 C 0.03 0.37 4.91 -3.71 -0.02 0.35 16 28 H 0.27 7.41 8.31 -40.82 -0.34 7.08 16 29 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 30 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 31 H 0.40 6.87 8.32 -40.82 -0.34 6.54 16 32 H 0.10 1.23 8.04 -51.93 -0.42 0.81 16 33 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 34 H 0.11 1.76 5.88 -51.92 -0.31 1.45 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.14 1.17 7.35 -52.49 -0.39 0.79 16 39 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 40 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.09 0.97 8.09 -51.93 -0.42 0.55 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -32.52 358.24 -8.90 -41.42 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: -6.00 Total: 3.51 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -2.80 Total: -0.66 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: -0.62 Total: -48.25 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.25 Total: -16.69 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.52 -8.90 -41.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066846548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.046 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds