Wall clock time and date at job start Tue Mar 31 2020 13:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99804 * 2 1 4 4 H 1.48506 * 109.46786 * 270.00297 * 3 2 1 5 5 H 1.48499 * 109.47298 * 29.99751 * 3 2 1 6 6 H 1.48490 * 109.47372 * 150.00511 * 3 2 1 7 7 C 1.37871 * 120.00353 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99799 * 359.97438 * 7 2 1 9 9 C 1.50701 * 120.00101 * 179.97438 * 7 2 1 10 10 N 1.46503 * 109.46989 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99714 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00150 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99783 * 180.02562 * 11 10 9 14 14 N 1.46906 * 109.47053 * 180.02562 * 13 11 10 15 15 C 1.47009 * 110.99824 * 66.37017 * 14 13 11 16 16 C 1.53104 * 109.25749 * 182.39279 * 15 14 13 17 17 O 1.43009 * 109.25680 * 303.15031 * 16 15 14 18 18 C 1.43016 * 113.73966 * 58.66667 * 17 16 15 19 19 H 1.09001 * 109.53593 * 61.29123 * 18 17 16 20 20 C 1.50697 * 109.50495 * 181.39341 * 18 17 16 21 21 C 1.38225 * 120.01590 * 24.78963 * 20 18 17 22 22 C 1.38217 * 120.02811 * 179.97438 * 21 20 18 23 23 C 1.38275 * 120.05337 * 359.95316 * 22 21 20 24 24 C 1.38176 * 120.02246 * 0.02562 * 23 22 21 25 25 C 1.38443 * 120.01481 * 204.76062 * 20 18 17 26 26 F 1.35099 * 120.02154 * 0.02562 * 25 20 18 27 27 C 1.47016 * 110.99779 * 190.00244 * 14 13 11 28 28 H 0.97003 * 120.00435 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46878 * 59.99782 * 9 7 2 30 30 H 1.08999 * 109.47212 * 299.99987 * 9 7 2 31 31 H 0.96994 * 120.00374 * 0.02562 * 10 9 7 32 32 H 1.09002 * 109.47065 * 60.00615 * 13 11 10 33 33 H 1.08999 * 109.47486 * 300.00537 * 13 11 10 34 34 H 1.09009 * 109.50812 * 302.32296 * 15 14 13 35 35 H 1.08994 * 109.51173 * 62.45374 * 15 14 13 36 36 H 1.08999 * 109.50246 * 63.08743 * 16 15 14 37 37 H 1.09001 * 109.50317 * 183.16814 * 16 15 14 38 38 H 1.08000 * 119.98148 * 359.97189 * 21 20 18 39 39 H 1.07997 * 119.97688 * 179.97438 * 22 21 20 40 40 H 1.07994 * 119.98945 * 179.74973 * 23 22 21 41 41 H 1.08002 * 120.01117 * 179.97438 * 24 23 22 42 42 H 1.09002 * 109.50501 * 57.67658 * 27 14 13 43 43 H 1.08994 * 109.50614 * 297.54278 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 3.9999 -2.5751 -0.0010 11 6 5.3251 -2.8213 -0.0020 12 8 6.1131 -1.8995 -0.0025 13 6 5.8274 -4.2421 -0.0024 14 7 7.2965 -4.2420 -0.0029 15 6 7.8236 -3.6922 1.2545 16 6 9.3528 -3.6553 1.1876 17 8 9.8453 -4.9717 0.9239 18 6 9.3523 -5.5376 -0.2936 19 1 9.6657 -4.9204 -1.1356 20 6 9.9016 -6.9311 -0.4593 21 6 10.2953 -7.6556 0.6501 22 6 10.7986 -8.9339 0.4985 23 6 10.9080 -9.4900 -0.7628 24 6 10.5147 -8.7678 -1.8732 25 6 10.0115 -7.4865 -1.7226 26 9 9.6270 -6.7794 -2.8077 27 6 7.8233 -5.5936 -0.2417 28 1 -0.4851 0.8400 0.0004 29 1 3.8752 -0.6802 0.8888 30 1 3.8745 -0.6799 -0.8911 31 1 3.3697 -3.3124 -0.0010 32 1 5.4635 -4.7558 -0.8923 33 1 5.4647 -4.7561 0.8877 34 1 7.4412 -2.6816 1.3985 35 1 7.5108 -4.3224 2.0869 36 1 9.6660 -2.9826 0.3892 37 1 9.7502 -3.3010 2.1388 38 1 10.2096 -7.2226 1.6358 39 1 11.1063 -9.4991 1.3658 40 1 11.3052 -10.4873 -0.8804 41 1 10.6006 -9.2022 -2.8583 42 1 7.4405 -5.9711 -1.1900 43 1 7.5104 -6.2543 0.5667 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066846548.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:06 Heat of formation + Delta-G solvation = -110.561919 kcal Electronic energy + Delta-G solvation = -26706.725255 eV Core-core repulsion = 22665.668943 eV Total energy + Delta-G solvation = -4041.056312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 322.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.94667 -41.33460 -40.38925 -39.37537 -36.76270 -36.01034 -34.42200 -33.91895 -31.50690 -31.12321 -30.45888 -29.19186 -26.26969 -25.31265 -24.04153 -23.60597 -22.65977 -21.49958 -21.39835 -19.20218 -18.67977 -17.93590 -17.75191 -17.62913 -17.02291 -16.93254 -16.70715 -16.60652 -16.23275 -16.10450 -15.70068 -15.60220 -15.33482 -14.99192 -14.87888 -14.55088 -14.33947 -14.12516 -14.07239 -13.70912 -13.36049 -13.09537 -13.01929 -12.90150 -12.72833 -12.43657 -12.38975 -11.94599 -11.91052 -11.67965 -11.65764 -11.04957 -10.93074 -10.64201 -9.93799 -9.91086 -9.64411 -9.44934 -8.41068 -6.48044 0.12568 0.26569 1.31868 1.34120 1.46349 1.71177 2.17116 2.27136 2.48754 2.66931 2.88256 2.94298 3.29252 3.59411 3.75729 3.80208 3.92001 3.93542 4.05096 4.11734 4.16284 4.25221 4.32606 4.40440 4.41431 4.50018 4.53253 4.69465 4.77805 4.83033 4.85361 4.94931 5.02302 5.11501 5.20693 5.25298 5.38464 5.48506 5.51881 5.71111 5.83460 5.93736 6.06459 6.08778 6.53073 6.84720 7.14920 7.41344 8.73575 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027565 B = 0.002341 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.550755 B =11959.545361 C =12313.568614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.234 3.766 10 N -0.707 5.707 11 C 0.501 3.499 12 O -0.577 6.577 13 C 0.047 3.953 14 N -0.538 5.538 15 C 0.014 3.986 16 C 0.071 3.929 17 O -0.380 6.380 18 C 0.140 3.860 19 H 0.061 0.939 20 C -0.131 4.131 21 C -0.074 4.074 22 C -0.128 4.128 23 C -0.084 4.084 24 C -0.157 4.157 25 C 0.085 3.915 26 F -0.150 7.150 27 C 0.039 3.961 28 H 0.272 0.728 29 H 0.013 0.987 30 H 0.009 0.991 31 H 0.409 0.591 32 H 0.126 0.874 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.157 0.843 40 H 0.165 0.835 41 H 0.153 0.847 42 H 0.091 0.909 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.835 -21.818 1.423 32.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.111 3.889 10 N -0.357 5.357 11 C 0.288 3.712 12 O -0.458 6.458 13 C -0.084 4.084 14 N -0.263 5.263 15 C -0.113 4.113 16 C -0.005 4.005 17 O -0.299 6.299 18 C 0.082 3.918 19 H 0.079 0.921 20 C -0.133 4.133 21 C -0.092 4.092 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.176 4.176 25 C 0.065 3.935 26 F -0.128 7.128 27 C -0.089 4.089 28 H 0.081 0.919 29 H 0.031 0.969 30 H 0.027 0.973 31 H 0.244 0.756 32 H 0.144 0.856 33 H 0.106 0.894 34 H 0.102 0.898 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.175 0.825 40 H 0.183 0.817 41 H 0.171 0.829 42 H 0.110 0.890 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 24.476 -20.799 1.120 32.139 hybrid contribution -1.163 0.779 0.049 1.401 sum 23.313 -20.020 1.169 30.752 Atomic orbital electron populations 1.69980 1.07669 1.28608 1.50710 1.25609 0.95557 1.02698 0.93634 0.85849 0.79246 0.79344 0.79383 1.19154 1.19801 1.18441 1.21297 0.89991 0.94572 1.52557 0.92221 1.19059 0.93264 0.81054 0.95559 1.46016 1.06701 1.09715 1.73309 1.21111 0.82009 0.92286 0.75781 1.90601 1.55981 1.47780 1.51393 1.21960 0.88481 0.92577 1.05360 1.61765 1.06469 1.22118 1.35947 1.22918 0.96962 1.01674 0.89781 1.22705 0.91663 0.83409 1.02745 1.87906 1.70067 1.31500 1.40460 1.20598 0.91963 0.91303 0.87907 0.92106 1.19602 1.04921 0.95685 0.93081 1.21070 0.95800 0.94161 0.98184 1.21611 0.99112 0.94841 0.98994 1.21473 0.96675 1.00907 0.91086 1.21418 1.01524 0.92386 1.02255 1.17780 1.01682 0.92064 0.81942 1.91484 1.89104 1.78662 1.53579 1.22708 0.94612 0.88792 1.02745 0.91851 0.96942 0.97278 0.75585 0.85615 0.89413 0.89802 0.93309 0.93099 0.85806 0.84296 0.82498 0.81750 0.82921 0.89045 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.64 13.96 21.44 0.30 -55.34 16 2 C 0.03 1.43 5.47 84.65 0.46 1.90 16 3 Si 0.94 44.27 27.47 68.60 1.88 46.15 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -12.15 6.54 99.48 0.65 -11.50 16 7 C -0.55 -30.12 9.83 25.60 0.25 -29.87 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.48 4.50 85.63 0.38 11.86 16 10 N -0.71 -27.83 5.55 -466.78 -2.59 -30.42 16 11 C 0.50 18.39 7.54 87.66 0.66 19.05 16 12 O -0.58 -25.65 14.35 -3.03 -0.04 -25.70 16 13 C 0.05 1.21 5.45 85.56 0.47 1.68 16 14 N -0.54 -14.48 4.46 -899.76 -4.01 -18.49 16 15 C 0.01 0.38 5.29 86.32 0.46 0.84 16 16 C 0.07 1.63 7.01 72.02 0.50 2.14 16 17 O -0.38 -8.77 9.30 -148.98 -1.39 -10.15 16 18 C 0.14 3.20 2.79 29.88 0.08 3.28 16 19 H 0.06 1.60 7.80 -2.39 -0.02 1.58 16 20 C -0.13 -2.57 5.08 -19.82 -0.10 -2.67 16 21 C -0.07 -1.15 9.35 22.26 0.21 -0.95 16 22 C -0.13 -1.33 10.04 22.27 0.22 -1.11 16 23 C -0.08 -0.78 10.04 22.26 0.22 -0.56 16 24 C -0.16 -2.09 10.03 22.31 0.22 -1.87 16 25 C 0.08 1.61 7.24 22.38 0.16 1.78 16 26 F -0.15 -3.40 16.57 44.97 0.75 -2.65 16 27 C 0.04 0.86 4.91 86.31 0.42 1.29 16 28 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 29 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 30 H 0.01 0.48 7.57 -2.39 -0.02 0.46 16 31 H 0.41 13.92 8.32 -92.71 -0.77 13.15 16 32 H 0.13 2.71 8.04 -2.39 -0.02 2.69 16 33 H 0.09 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.08 2.69 5.88 -2.38 -0.01 2.67 16 35 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.14 2.11 7.35 -2.91 -0.02 2.09 16 39 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.16 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 42 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 43 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -71.10 358.24 -0.26 -71.36 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: 0.20 Total: 18.46 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 4.64 Total: 6.79 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -6.30 Total: -104.26 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -1.43 Total: -35.85 kcal Atomic # 9 Polarization: -3.40 SS G_CDS: 0.75 Total: -2.65 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -71.10 -0.26 -71.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066846548.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.201 kcal (2) G-P(sol) polarization free energy of solvation -71.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds