Wall clock time and date at job start Tue Mar 31 2020 13:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48503 * 109.47386 * 240.00541 * 3 2 1 5 5 H 1.48501 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47215 * 120.00007 * 3 2 1 7 7 C 1.39893 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99946 * 163.16885 * 7 2 1 9 9 C 1.41155 * 120.00003 * 343.15956 * 7 2 1 10 10 C 1.40872 * 120.16560 * 334.64105 * 9 7 2 11 11 C 1.36378 * 119.82918 * 180.29304 * 10 9 7 12 12 C 1.39482 * 120.16398 * 359.45486 * 11 10 9 13 13 N 1.39243 * 119.83139 * 180.29918 * 12 11 10 14 14 C 1.34776 * 119.99989 * 145.76345 * 13 12 11 15 15 O 1.21580 * 119.99978 * 354.85555 * 14 13 12 16 16 N 1.34780 * 119.99841 * 174.85717 * 14 13 12 17 17 C 1.46495 * 120.00018 * 180.02562 * 16 14 13 18 18 H 1.09003 * 115.54777 * 9.41372 * 17 16 14 19 19 C 1.52999 * 117.50124 * 223.74619 * 17 16 14 20 20 C 1.53004 * 117.50091 * 155.08365 * 17 16 14 21 21 H 1.08997 * 117.49300 * 0.02562 * 20 17 16 22 22 C 1.50695 * 117.50014 * 214.97951 * 20 17 16 23 23 C 1.38236 * 119.99876 * 299.72686 * 22 20 17 24 24 C 1.38240 * 120.00017 * 179.78600 * 23 22 20 25 25 C 1.38233 * 119.99760 * 0.44365 * 24 23 22 26 26 C 1.38239 * 120.00289 * 359.81398 * 25 24 23 27 27 C 1.38235 * 120.00035 * 119.99768 * 22 20 17 28 28 C 1.39478 * 120.33464 * 0.54704 * 12 11 10 29 29 C 1.36371 * 120.17243 * 359.72893 * 28 12 11 30 30 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.08214 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.91259 * 179.72293 * 11 10 9 33 33 H 0.97003 * 119.99818 * 325.76797 * 13 12 11 34 34 H 0.97000 * 119.99718 * 359.97438 * 16 14 13 35 35 H 1.09008 * 117.49453 * 359.97438 * 19 17 16 36 36 H 1.08994 * 117.50543 * 145.02107 * 19 17 16 37 37 H 1.07998 * 120.00390 * 359.97438 * 23 22 20 38 38 H 1.07995 * 120.00326 * 180.27197 * 24 23 22 39 39 H 1.07999 * 120.00128 * 179.83119 * 25 24 23 40 40 H 1.07997 * 120.00236 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.00227 * 359.97438 * 27 22 20 42 42 H 1.08007 * 119.91327 * 179.75171 * 28 12 11 43 43 H 1.07996 * 120.09018 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6966 -1.2126 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2314 -0.2714 9 6 1.3479 -2.4079 0.3531 10 6 0.2149 -2.3705 1.1894 11 6 -0.4142 -3.5311 1.5315 12 6 0.0547 -4.7519 1.0464 13 7 -0.5967 -5.9321 1.3952 14 6 -0.6683 -6.9484 0.5128 15 8 -0.2472 -6.8022 -0.6183 16 7 -1.2066 -8.1268 0.8845 17 6 -1.2838 -9.2317 -0.0744 18 1 -0.7458 -9.0804 -1.0102 19 6 -2.5888 -10.0284 -0.1306 20 6 -1.3361 -10.6534 0.4886 21 1 -1.3134 -10.7666 1.5725 22 6 -0.6403 -11.7375 -0.2934 23 6 -1.0311 -12.0135 -1.5903 24 6 -0.3899 -13.0050 -2.3092 25 6 0.6359 -13.7267 -1.7280 26 6 1.0231 -13.4543 -0.4292 27 6 0.3849 -12.4598 0.2881 28 6 1.1759 -4.7969 0.2180 29 6 1.8189 -3.6452 -0.1283 30 1 -0.4851 0.8400 0.0004 31 1 -0.1519 -1.4256 1.5621 32 1 -1.2802 -3.5044 2.1762 33 1 -0.9991 -6.0228 2.2731 34 1 -1.5421 -8.2436 1.7871 35 1 -3.3897 -9.7307 0.5463 36 1 -2.9092 -10.4017 -1.1032 37 1 -1.8353 -11.4525 -2.0430 38 1 -0.6922 -13.2177 -3.3239 39 1 1.1350 -14.5031 -2.2887 40 1 1.8248 -14.0178 0.0247 41 1 0.6876 -12.2468 1.3028 42 1 1.5355 -5.7463 -0.1506 43 1 2.6871 -3.6816 -0.7696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067561501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:17 Heat of formation + Delta-G solvation = 45.728618 kcal Electronic energy + Delta-G solvation = -24768.067321 eV Core-core repulsion = 21164.557499 eV Total energy + Delta-G solvation = -3603.509821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.23925 -39.52609 -37.74069 -36.82581 -34.38525 -33.34403 -32.58228 -31.16237 -30.36549 -29.51801 -28.68975 -25.01600 -24.08763 -22.88613 -22.39711 -21.39658 -20.77998 -20.60781 -20.05816 -18.14624 -17.29791 -17.10270 -16.84714 -15.79784 -15.28184 -15.16870 -14.97588 -14.74448 -14.31042 -14.03695 -13.89183 -13.57620 -13.15563 -13.05554 -12.79654 -12.64101 -12.16119 -12.07215 -11.82619 -11.64107 -11.44907 -11.26108 -11.22320 -11.07929 -10.98976 -10.71994 -10.68252 -10.06600 -9.56538 -9.51846 -9.16777 -9.13412 -9.10945 -8.90115 -8.46072 -7.50605 -6.93160 -6.70416 -4.26267 1.09024 1.18978 2.67201 2.90888 3.08024 3.10348 3.13202 3.16630 3.36546 3.67885 3.95360 3.97958 4.40512 4.56720 4.59417 4.65194 4.66966 4.76971 4.80576 4.89836 4.99737 5.24941 5.37630 5.51043 5.70258 5.72247 5.79603 5.83305 5.84224 6.22303 6.25700 6.30293 6.40133 6.45611 6.57001 6.78053 6.80783 6.83405 7.07264 7.14816 7.30316 7.39091 7.64345 7.89505 7.99652 8.08032 8.31813 8.48693 8.63409 8.92000 8.94126 9.11734 10.21567 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.002031 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.208825 B =13782.373597 C =14233.290419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.074 3.926 3 Si 0.909 3.091 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.458 4.458 8 H 0.077 0.923 9 C 0.104 3.896 10 C -0.153 4.153 11 C -0.115 4.115 12 C 0.011 3.989 13 N -0.664 5.664 14 C 0.697 3.303 15 O -0.574 6.574 16 N -0.724 5.724 17 C 0.128 3.872 18 H 0.140 0.860 19 C -0.189 4.189 20 C -0.132 4.132 21 H 0.114 0.886 22 C -0.046 4.046 23 C -0.120 4.120 24 C -0.116 4.116 25 C -0.127 4.127 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.076 4.076 29 C -0.214 4.214 30 H 0.280 0.720 31 H 0.121 0.879 32 H 0.089 0.911 33 H 0.391 0.609 34 H 0.394 0.606 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.121 0.879 42 H 0.101 0.899 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.453 -21.542 2.947 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.172 4.172 11 C -0.135 4.135 12 C -0.081 4.081 13 N -0.310 5.310 14 C 0.398 3.602 15 O -0.450 6.450 16 N -0.378 5.378 17 C 0.021 3.979 18 H 0.158 0.842 19 C -0.228 4.228 20 C -0.152 4.152 21 H 0.132 0.868 22 C -0.046 4.046 23 C -0.138 4.138 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.136 4.136 27 C -0.131 4.131 28 C -0.096 4.096 29 C -0.234 4.234 30 H 0.091 0.909 31 H 0.139 0.861 32 H 0.108 0.892 33 H 0.224 0.776 34 H 0.227 0.773 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.139 0.861 42 H 0.119 0.881 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.243 -21.200 1.885 21.702 hybrid contribution -0.173 0.568 0.852 1.039 sum -4.416 -20.632 2.737 21.276 Atomic orbital electron populations 1.69840 1.07528 1.29239 1.35393 1.25917 0.94751 1.01299 0.92384 0.86355 0.80100 0.80217 0.79955 1.19020 1.20405 1.18861 1.19511 0.97767 0.91146 1.40384 0.90443 1.17655 0.91396 0.92135 0.88676 1.20879 0.99330 0.96248 1.00791 1.20194 0.99225 0.91667 1.02445 1.16947 0.97551 0.83129 1.10483 1.42095 1.58928 1.14012 1.15968 1.15954 0.79263 0.80119 0.84886 1.90926 1.53435 1.81794 1.18864 1.44499 1.66949 1.11460 1.14846 1.21482 0.99703 0.81902 0.94848 0.84240 1.23688 0.92098 1.03760 1.03242 1.21621 1.01200 0.93179 0.99169 0.86764 1.19075 0.95949 0.95593 0.94013 1.21104 1.00317 0.98227 0.94138 1.21137 0.96391 0.96137 0.99786 1.21154 0.97768 1.00111 0.95481 1.21135 0.99786 0.97911 0.94793 1.20977 0.95901 0.96025 1.00186 1.20250 0.93685 0.97716 0.97962 1.20649 1.03764 0.92617 1.06413 0.90864 0.86087 0.89240 0.77612 0.77267 0.88057 0.87635 0.85745 0.86036 0.86212 0.86082 0.86073 0.88059 0.88724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.69 10.95 55.54 0.61 -20.08 16 2 C 0.07 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.76 29.59 -169.99 -5.03 13.73 16 4 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 5 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 7 C -0.46 -12.29 9.04 -37.86 -0.34 -12.64 16 8 H 0.08 1.99 7.90 -52.48 -0.41 1.58 16 9 C 0.10 2.83 5.57 -106.80 -0.59 2.23 16 10 C -0.15 -3.95 8.63 -39.26 -0.34 -4.29 16 11 C -0.11 -2.65 9.90 -39.79 -0.39 -3.05 16 12 C 0.01 0.26 6.27 -83.57 -0.52 -0.26 16 13 N -0.66 -11.88 5.31 -14.10 -0.07 -11.96 16 14 C 0.70 12.61 8.28 -86.92 -0.72 11.89 16 15 O -0.57 -13.05 13.63 5.30 0.07 -12.98 16 16 N -0.72 -9.22 5.57 -58.68 -0.33 -9.55 16 17 C 0.13 1.52 6.06 -67.93 -0.41 1.10 16 18 H 0.14 2.01 7.40 -51.93 -0.38 1.62 16 19 C -0.19 -1.68 9.79 -26.69 -0.26 -1.94 16 20 C -0.13 -1.22 5.97 -91.73 -0.55 -1.76 16 21 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 22 C -0.05 -0.46 5.61 -104.63 -0.59 -1.04 16 23 C -0.12 -1.14 9.30 -39.58 -0.37 -1.51 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 25 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 26 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 27 C -0.11 -1.07 9.74 -39.58 -0.39 -1.45 16 28 C -0.08 -1.87 8.57 -39.79 -0.34 -2.21 16 29 C -0.21 -5.55 9.74 -39.26 -0.38 -5.93 16 30 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 31 H 0.12 3.20 6.17 -52.49 -0.32 2.88 16 32 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 33 H 0.39 5.37 8.83 -40.82 -0.36 5.01 16 34 H 0.39 3.65 8.85 -40.82 -0.36 3.29 16 35 H 0.10 0.79 8.14 -51.92 -0.42 0.37 16 36 H 0.11 0.85 6.17 -51.93 -0.32 0.53 16 37 H 0.12 1.03 6.02 -52.49 -0.32 0.72 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.10 2.48 6.47 -52.48 -0.34 2.14 16 43 H 0.09 2.33 8.06 -52.49 -0.42 1.91 16 LS Contribution 364.86 15.07 5.50 5.50 Total: -1.00 -31.98 364.86 -12.07 -44.05 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.34 Total: 14.68 kcal Atomic # 6 Polarization: -15.92 SS G_CDS: -7.48 Total: -23.40 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: 0.21 Total: -41.58 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.07 Total: -12.98 kcal Atomic # 14 Polarization: 18.76 SS G_CDS: -5.03 Total: 13.73 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.98 -12.07 -44.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067561501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.780 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds