Wall clock time and date at job start Tue Mar 31 2020 13:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30878 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48503 * 109.47386 * 240.00541 * 3 2 1 5 5 H 1.48501 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47215 * 120.00007 * 3 2 1 7 7 C 1.39893 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99946 * 163.16885 * 7 2 1 9 9 C 1.41155 * 120.00003 * 343.15956 * 7 2 1 10 10 C 1.40872 * 120.16560 * 334.64105 * 9 7 2 11 11 C 1.36378 * 119.82918 * 180.29304 * 10 9 7 12 12 C 1.39482 * 120.16398 * 359.45486 * 11 10 9 13 13 N 1.39243 * 119.83139 * 180.29918 * 12 11 10 14 14 C 1.34776 * 119.99989 * 145.76345 * 13 12 11 15 15 O 1.21580 * 119.99978 * 354.85555 * 14 13 12 16 16 N 1.34780 * 119.99841 * 174.85717 * 14 13 12 17 17 C 1.46495 * 120.00018 * 180.02562 * 16 14 13 18 18 H 1.09003 * 115.54777 * 9.41372 * 17 16 14 19 19 C 1.52999 * 117.50124 * 223.74619 * 17 16 14 20 20 C 1.53004 * 117.50091 * 155.08365 * 17 16 14 21 21 H 1.08997 * 117.49300 * 0.02562 * 20 17 16 22 22 C 1.50695 * 117.50014 * 214.97951 * 20 17 16 23 23 C 1.38236 * 119.99876 * 299.72686 * 22 20 17 24 24 C 1.38240 * 120.00017 * 179.78600 * 23 22 20 25 25 C 1.38233 * 119.99760 * 0.44365 * 24 23 22 26 26 C 1.38239 * 120.00289 * 359.81398 * 25 24 23 27 27 C 1.38235 * 120.00035 * 119.99768 * 22 20 17 28 28 C 1.39478 * 120.33464 * 0.54704 * 12 11 10 29 29 C 1.36371 * 120.17243 * 359.72893 * 28 12 11 30 30 H 0.97001 * 120.00529 * 359.97438 * 1 2 3 31 31 H 1.07994 * 120.08214 * 0.02562 * 10 9 7 32 32 H 1.07995 * 119.91259 * 179.72293 * 11 10 9 33 33 H 0.97003 * 119.99818 * 325.76797 * 13 12 11 34 34 H 0.97000 * 119.99718 * 359.97438 * 16 14 13 35 35 H 1.09008 * 117.49453 * 359.97438 * 19 17 16 36 36 H 1.08994 * 117.50543 * 145.02107 * 19 17 16 37 37 H 1.07998 * 120.00390 * 359.97438 * 23 22 20 38 38 H 1.07995 * 120.00326 * 180.27197 * 24 23 22 39 39 H 1.07999 * 120.00128 * 179.83119 * 25 24 23 40 40 H 1.07997 * 120.00236 * 180.02562 * 26 25 24 41 41 H 1.08003 * 120.00227 * 359.97438 * 27 22 20 42 42 H 1.08007 * 119.91327 * 179.75171 * 28 12 11 43 43 H 1.07996 * 120.09018 * 179.97438 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6966 -1.2126 5 1 1.2777 2.7464 0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2115 -0.0005 8 1 3.0536 -1.2314 -0.2714 9 6 1.3479 -2.4079 0.3531 10 6 0.2149 -2.3705 1.1894 11 6 -0.4142 -3.5311 1.5315 12 6 0.0547 -4.7519 1.0464 13 7 -0.5967 -5.9321 1.3952 14 6 -0.6683 -6.9484 0.5128 15 8 -0.2472 -6.8022 -0.6183 16 7 -1.2066 -8.1268 0.8845 17 6 -1.2838 -9.2317 -0.0744 18 1 -0.7458 -9.0804 -1.0102 19 6 -2.5888 -10.0284 -0.1306 20 6 -1.3361 -10.6534 0.4886 21 1 -1.3134 -10.7666 1.5725 22 6 -0.6403 -11.7375 -0.2934 23 6 -1.0311 -12.0135 -1.5903 24 6 -0.3899 -13.0050 -2.3092 25 6 0.6359 -13.7267 -1.7280 26 6 1.0231 -13.4543 -0.4292 27 6 0.3849 -12.4598 0.2881 28 6 1.1759 -4.7969 0.2180 29 6 1.8189 -3.6452 -0.1283 30 1 -0.4851 0.8400 0.0004 31 1 -0.1519 -1.4256 1.5621 32 1 -1.2802 -3.5044 2.1762 33 1 -0.9991 -6.0228 2.2731 34 1 -1.5421 -8.2436 1.7871 35 1 -3.3897 -9.7307 0.5463 36 1 -2.9092 -10.4017 -1.1032 37 1 -1.8353 -11.4525 -2.0430 38 1 -0.6922 -13.2177 -3.3239 39 1 1.1350 -14.5031 -2.2887 40 1 1.8248 -14.0178 0.0247 41 1 0.6876 -12.2468 1.3028 42 1 1.5355 -5.7463 -0.1506 43 1 2.6871 -3.6816 -0.7696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067561501.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:16 Heat of formation + Delta-G solvation = 28.070619 kcal Electronic energy + Delta-G solvation = -24768.833029 eV Core-core repulsion = 21164.557499 eV Total energy + Delta-G solvation = -3604.275530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.50310 -40.48713 -39.27744 -37.98890 -36.13757 -34.91202 -33.96305 -31.82562 -31.48378 -31.19419 -30.45389 -26.83363 -24.79768 -24.07500 -23.32393 -22.98400 -22.32963 -21.73357 -21.23647 -19.55964 -19.15951 -18.27369 -17.90392 -17.12976 -16.83930 -16.35403 -15.96978 -15.78328 -15.70127 -15.43434 -15.01046 -14.87207 -14.48194 -14.23569 -13.98271 -13.80375 -13.71015 -13.61610 -13.22628 -12.96555 -12.80764 -12.74369 -12.46321 -12.41765 -12.15239 -11.89294 -11.80553 -11.45837 -11.42837 -11.24316 -11.02926 -10.70663 -10.03251 -9.80924 -9.46163 -9.32900 -8.80276 -8.57692 -6.25464 0.38899 0.51425 0.86532 1.15356 1.40092 1.49176 1.53087 1.68758 2.12212 2.23486 2.70381 2.79634 3.14171 3.33052 3.70476 3.74793 3.77906 3.92681 4.03605 4.16382 4.26881 4.31571 4.40041 4.49769 4.60918 4.71829 4.73320 4.90312 4.94884 5.05580 5.11745 5.16685 5.17281 5.18210 5.31041 5.45245 5.52123 5.60271 5.64356 5.65524 5.71373 5.80695 6.04660 6.11349 6.13050 6.24432 6.39356 6.66936 6.94648 7.01486 7.15332 7.65165 8.35301 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.028015 B = 0.002031 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.208825 B =13782.373597 C =14233.290419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.074 0.926 9 C 0.073 3.927 10 C -0.170 4.170 11 C -0.112 4.112 12 C 0.029 3.971 13 N -0.656 5.656 14 C 0.695 3.305 15 O -0.625 6.625 16 N -0.698 5.698 17 C 0.094 3.906 18 H 0.107 0.893 19 C -0.168 4.168 20 C -0.110 4.110 21 H 0.134 0.866 22 C -0.067 4.067 23 C -0.134 4.134 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.128 4.128 27 C -0.126 4.126 28 C -0.088 4.088 29 C -0.233 4.233 30 H 0.289 0.711 31 H 0.112 0.888 32 H 0.125 0.875 33 H 0.415 0.585 34 H 0.415 0.585 35 H 0.120 0.880 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.098 0.902 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 -22.791 4.209 23.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.181 4.181 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.190 4.190 11 C -0.132 4.132 12 C -0.066 4.066 13 N -0.304 5.304 14 C 0.396 3.604 15 O -0.505 6.505 16 N -0.353 5.353 17 C -0.013 4.013 18 H 0.125 0.875 19 C -0.206 4.206 20 C -0.130 4.130 21 H 0.152 0.848 22 C -0.067 4.067 23 C -0.152 4.152 24 C -0.146 4.146 25 C -0.151 4.151 26 C -0.146 4.146 27 C -0.144 4.144 28 C -0.108 4.108 29 C -0.253 4.253 30 H 0.100 0.900 31 H 0.130 0.870 32 H 0.143 0.857 33 H 0.252 0.748 34 H 0.252 0.748 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.149 0.851 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.116 0.884 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.402 -22.527 3.203 23.386 hybrid contribution 0.116 0.705 0.429 0.834 sum -5.286 -21.822 3.633 22.745 Atomic orbital electron populations 1.69881 1.08904 1.30665 1.35676 1.26766 0.95570 1.04481 0.91277 0.85215 0.78733 0.75504 0.80001 1.18727 1.19041 1.18276 1.19743 0.97970 0.92384 1.42489 0.90794 1.17983 0.92536 0.92719 0.89746 1.20904 0.99700 0.96980 1.01389 1.20456 0.99709 0.90770 1.02294 1.16969 0.96438 0.84786 1.08365 1.41842 1.58665 1.12649 1.17215 1.16122 0.79038 0.81150 0.84086 1.90902 1.55592 1.82843 1.21159 1.44185 1.65360 1.09753 1.16003 1.21462 1.02684 0.82908 0.94205 0.87503 1.23782 0.91538 1.01221 1.04095 1.21645 1.00597 0.90660 1.00079 0.84842 1.19274 0.96692 0.96234 0.94481 1.21321 1.00841 0.98662 0.94332 1.21438 0.96498 0.96006 1.00655 1.21489 0.97586 1.00383 0.95687 1.21451 1.00178 0.97900 0.95030 1.21235 0.95913 0.96274 1.00946 1.20335 0.94630 0.97047 0.98786 1.20769 1.04314 0.93117 1.07105 0.90030 0.87032 0.85691 0.74819 0.74784 0.86155 0.86928 0.85130 0.84431 0.84226 0.84235 0.84971 0.88403 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -43.61 10.95 21.82 0.24 -43.37 16 2 C 0.03 1.73 5.15 85.24 0.44 2.17 16 3 Si 0.98 38.69 29.59 68.60 2.03 40.72 16 4 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 5 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.50 -27.59 9.04 23.39 0.21 -27.38 16 8 H 0.07 3.98 7.90 -2.91 -0.02 3.96 16 9 C 0.07 4.10 5.57 -21.27 -0.12 3.98 16 10 C -0.17 -8.96 8.63 22.48 0.19 -8.76 16 11 C -0.11 -5.09 9.90 22.14 0.22 -4.87 16 12 C 0.03 1.28 6.27 38.56 0.24 1.52 16 13 N -0.66 -22.39 5.31 -316.78 -1.68 -24.07 16 14 C 0.70 24.59 8.28 179.05 1.48 26.07 16 15 O -0.62 -28.92 13.63 -3.97 -0.05 -28.97 16 16 N -0.70 -16.53 5.57 -457.82 -2.55 -19.08 16 17 C 0.09 2.13 6.06 44.99 0.27 2.40 16 18 H 0.11 3.18 7.40 -2.39 -0.02 3.16 16 19 C -0.17 -2.57 9.79 30.62 0.30 -2.27 16 20 C -0.11 -1.80 5.97 -11.51 -0.07 -1.87 16 21 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 22 C -0.07 -1.24 5.61 -19.87 -0.11 -1.35 16 23 C -0.13 -2.43 9.30 22.27 0.21 -2.22 16 24 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16 25 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 26 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 27 C -0.13 -2.20 9.74 22.27 0.22 -1.98 16 28 C -0.09 -4.41 8.57 22.13 0.19 -4.23 16 29 C -0.23 -12.58 9.74 22.48 0.22 -12.36 16 30 H 0.29 13.75 8.30 -92.71 -0.77 12.98 16 31 H 0.11 6.03 6.17 -2.91 -0.02 6.01 16 32 H 0.13 4.71 8.06 -2.91 -0.02 4.69 16 33 H 0.41 10.18 8.83 -92.71 -0.82 9.36 16 34 H 0.41 6.37 8.85 -92.71 -0.82 5.55 16 35 H 0.12 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.11 1.59 6.17 -2.39 -0.01 1.57 16 37 H 0.13 2.07 6.02 -2.91 -0.02 2.05 16 38 H 0.14 1.70 8.06 -2.91 -0.02 1.68 16 39 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 42 H 0.10 4.95 6.47 -2.91 -0.02 4.93 16 43 H 0.09 4.84 8.06 -2.91 -0.02 4.82 16 Total: -1.00 -72.36 364.86 1.97 -70.39 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.58 Total: 41.09 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 4.57 Total: -36.71 kcal Atomic # 7 Polarization: -82.53 SS G_CDS: -3.99 Total: -86.52 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.05 Total: -28.97 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -72.36 1.97 -70.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067561501.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.464 kcal (2) G-P(sol) polarization free energy of solvation -72.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds