Wall clock time and date at job start Tue Mar 31 2020 13:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86807 * 119.99817 * 2 1 4 4 H 1.48505 * 109.46794 * 269.99479 * 3 2 1 5 5 H 1.48491 * 109.47183 * 29.99653 * 3 2 1 6 6 H 1.48498 * 109.46863 * 150.00022 * 3 2 1 7 7 C 1.38801 * 120.00312 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00209 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99657 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99779 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47007 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47149 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.47430 * 179.97438 * 12 11 10 14 14 C 1.46897 * 111.00059 * 66.04123 * 13 12 11 15 15 C 1.53002 * 109.47287 * 199.53080 * 14 13 12 16 16 C 1.50697 * 109.47320 * 174.92851 * 15 14 13 17 17 N 1.34777 * 119.99958 * 180.02562 * 16 15 14 18 18 O 1.21279 * 119.99765 * 359.97438 * 16 15 14 19 19 C 1.46904 * 111.00334 * 190.00030 * 13 12 11 20 20 C 1.50696 * 109.47232 * 75.82299 * 19 13 12 21 21 C 1.38241 * 119.99539 * 84.40809 * 20 19 13 22 22 C 1.38232 * 119.99590 * 180.02562 * 21 20 19 23 23 C 1.38238 * 120.00315 * 359.94906 * 22 21 20 24 24 C 1.38235 * 119.99990 * 0.28253 * 23 22 21 25 25 C 1.38229 * 120.00578 * 264.38477 * 20 19 13 26 26 H 0.97000 * 120.00552 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47170 * 59.99702 * 10 9 7 28 28 H 1.08997 * 109.46805 * 299.99844 * 10 9 7 29 29 H 1.08999 * 109.47619 * 59.99707 * 11 10 9 30 30 H 1.09008 * 109.46648 * 299.99780 * 11 10 9 31 31 H 1.08999 * 109.47229 * 59.99309 * 12 11 10 32 32 H 1.08999 * 109.47086 * 299.99692 * 12 11 10 33 33 H 1.08994 * 109.47522 * 319.52930 * 14 13 12 34 34 H 1.09000 * 109.47282 * 79.53205 * 14 13 12 35 35 H 1.09004 * 109.46799 * 294.92689 * 15 14 13 36 36 H 1.09006 * 109.47295 * 54.92290 * 15 14 13 37 37 H 0.97006 * 120.00229 * 359.97438 * 17 16 15 38 38 H 0.96999 * 119.99948 * 179.97438 * 17 16 15 39 39 H 1.09002 * 109.46580 * 315.82616 * 19 13 12 40 40 H 1.09003 * 109.47050 * 195.83059 * 19 13 12 41 41 H 1.07994 * 120.00311 * 359.97438 * 21 20 19 42 42 H 1.08006 * 119.99981 * 179.97438 * 22 21 20 43 43 H 1.08001 * 119.99726 * 180.02562 * 23 22 21 44 44 H 1.07995 * 119.99925 * 179.71973 * 24 23 22 45 45 H 1.08006 * 119.99492 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9794 -5.3242 -0.0001 12 6 3.1514 -6.3077 0.0005 13 7 2.6364 -7.6834 0.0005 14 6 1.9308 -7.9813 -1.2529 15 6 1.0131 -9.1882 -1.0472 16 6 0.1976 -9.4174 -2.2936 17 7 -0.6867 -10.4334 -2.3429 18 8 0.3364 -8.6871 -3.2518 19 6 3.7165 -8.6500 0.2393 20 6 4.0902 -8.6353 1.6991 21 6 3.3733 -9.3960 2.6037 22 6 3.7157 -9.3821 3.9429 23 6 4.7757 -8.6084 4.3774 24 6 5.4896 -7.8440 3.4735 25 6 5.1501 -7.8616 2.1336 26 1 -0.4851 0.8400 0.0004 27 1 3.1246 -3.7313 0.8905 28 1 3.1245 -3.7313 -0.8894 29 1 1.3710 -5.4841 -0.8903 30 1 1.3706 -5.4845 0.8898 31 1 3.7595 -6.1477 0.8909 32 1 3.7607 -6.1474 -0.8890 33 1 1.3348 -7.1180 -1.5485 34 1 2.6570 -8.2061 -2.0341 35 1 1.6163 -10.0721 -0.8400 36 1 0.3460 -8.9983 -0.2063 37 1 -0.7979 -11.0173 -1.5763 38 1 -1.2118 -10.5807 -3.1450 39 1 4.5853 -8.3795 -0.3609 40 1 3.3790 -9.6483 -0.0394 41 1 2.5452 -10.0004 2.2644 42 1 3.1553 -9.9761 4.6498 43 1 5.0434 -8.5979 5.4236 44 1 6.3149 -7.2361 3.8136 45 1 5.7102 -7.2673 1.4268 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080722128.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:52 Heat of formation + Delta-G solvation = -29.353581 kcal Electronic energy + Delta-G solvation = -24012.422783 eV Core-core repulsion = 20541.101105 eV Total energy + Delta-G solvation = -3471.321678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.90252 -39.37989 -37.58858 -33.88155 -33.29528 -32.37254 -32.30404 -30.97804 -30.07615 -26.63270 -25.55062 -24.98487 -22.69639 -22.65496 -21.15773 -20.70602 -20.11497 -17.59575 -17.41713 -17.04547 -16.88938 -15.95963 -15.46252 -15.41360 -15.18854 -14.77091 -14.72785 -14.56747 -14.00926 -13.86032 -13.52307 -13.34137 -13.04174 -12.79223 -12.66839 -12.57805 -12.08684 -11.73752 -11.58378 -11.36820 -11.19385 -11.03507 -11.00003 -10.97188 -10.71137 -10.57048 -10.17519 -10.10794 -9.90945 -9.48321 -9.00615 -8.98730 -8.85501 -8.36241 -8.22688 -6.45769 -6.17328 -3.86783 1.24630 1.33135 2.48119 3.20588 3.25431 3.26735 3.32675 3.58320 3.68949 4.12899 4.28072 4.59522 4.72277 4.73050 4.84726 4.91290 5.01300 5.02060 5.14515 5.18465 5.24268 5.34993 5.41164 5.45354 5.48667 5.53704 5.65198 5.78275 5.82323 5.83963 5.90912 5.95562 6.06001 6.17395 6.36838 6.42216 6.42991 6.51915 6.54336 6.67139 6.81076 6.90527 7.03832 7.06140 7.11404 7.65696 8.07314 8.42003 9.28817 10.90889 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.008541 B = 0.003238 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3277.584762 B = 8645.692423 C =11322.276608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.870 5.870 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.515 4.515 8 H 0.072 0.928 9 S -0.132 6.132 10 C -0.112 4.112 11 C -0.094 4.094 12 C 0.060 3.940 13 N -0.532 5.532 14 C 0.062 3.938 15 C -0.136 4.136 16 C 0.516 3.484 17 N -0.860 5.860 18 O -0.540 6.540 19 C 0.089 3.911 20 C -0.072 4.072 21 C -0.098 4.098 22 C -0.123 4.123 23 C -0.123 4.123 24 C -0.120 4.120 25 C -0.113 4.113 26 H 0.267 0.733 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.401 0.599 38 H 0.400 0.600 39 H 0.044 0.956 40 H 0.080 0.920 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 -25.985 3.799 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.664 4.664 8 H 0.090 0.910 9 S 0.096 5.904 10 C -0.261 4.261 11 C -0.133 4.133 12 C -0.069 4.069 13 N -0.256 5.256 14 C -0.066 4.066 15 C -0.177 4.177 16 C 0.301 3.699 17 N -0.424 5.424 18 O -0.416 6.416 19 C -0.038 4.038 20 C -0.073 4.073 21 C -0.117 4.117 22 C -0.141 4.141 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.124 0.876 37 H 0.229 0.771 38 H 0.230 0.770 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.632 -25.508 3.651 26.181 hybrid contribution 2.115 1.010 -0.504 2.397 sum 6.747 -24.498 3.147 25.604 Atomic orbital electron populations 1.70025 1.05904 1.27236 1.47397 1.25007 0.95063 0.99032 0.94696 0.86182 0.79451 0.81649 0.78335 1.20302 1.20783 1.19709 1.22697 0.94505 0.90877 1.58272 0.91028 1.84639 1.09581 0.99313 1.96818 1.23219 1.02811 0.97431 1.02621 1.21303 0.96966 0.91887 1.03117 1.22230 0.97317 0.86535 1.00824 1.61924 1.26434 1.02739 1.34492 1.21917 0.96578 0.98286 0.89792 1.21626 0.99273 1.00475 0.96312 1.20754 0.79771 0.79706 0.89646 1.43907 1.43943 1.33737 1.20781 1.90788 1.66906 1.45772 1.38136 1.21095 0.93597 0.96864 0.92236 1.19730 0.95286 0.96899 0.95360 1.20943 0.98741 0.99107 0.92889 1.21130 0.97512 0.99630 0.95831 1.21133 0.96269 0.97267 0.99456 1.21122 1.00064 0.99235 0.93374 1.21090 0.97428 0.98643 0.95983 0.92365 0.92219 0.92389 0.91500 0.90843 0.90462 0.94823 0.88691 0.93970 0.89230 0.87630 0.77135 0.76981 0.93740 0.90192 0.86199 0.86290 0.86377 0.86228 0.86362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.57 13.22 55.49 0.73 -25.83 16 2 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 3 Si 0.92 22.00 29.55 -169.99 -5.02 16.98 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.52 -15.17 9.50 30.94 0.29 -14.88 16 8 H 0.07 2.04 7.80 -52.49 -0.41 1.63 16 9 S -0.13 -3.57 21.44 -107.50 -2.30 -5.87 16 10 C -0.11 -2.35 5.67 37.16 0.21 -2.13 16 11 C -0.09 -1.62 5.19 -26.73 -0.14 -1.76 16 12 C 0.06 0.83 4.78 -3.83 -0.02 0.81 16 13 N -0.53 -6.21 4.35 -236.08 -1.03 -7.23 16 14 C 0.06 0.73 4.18 -3.82 -0.02 0.71 16 15 C -0.14 -1.17 5.74 -27.88 -0.16 -1.33 16 16 C 0.52 5.34 8.10 -10.99 -0.09 5.25 16 17 N -0.86 -5.31 8.87 31.22 0.28 -5.03 16 18 O -0.54 -8.34 16.75 5.56 0.09 -8.24 16 19 C 0.09 0.87 4.95 -4.98 -0.02 0.84 16 20 C -0.07 -0.75 5.03 -104.63 -0.53 -1.27 16 21 C -0.10 -0.94 9.72 -39.58 -0.38 -1.33 16 22 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 23 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 24 C -0.12 -1.21 10.05 -39.58 -0.40 -1.60 16 25 C -0.11 -1.19 8.41 -39.59 -0.33 -1.53 16 26 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 27 H 0.06 1.24 8.14 -51.92 -0.42 0.82 16 28 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 29 H 0.07 1.19 6.25 -51.93 -0.32 0.87 16 30 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 31 H 0.08 1.08 6.33 -51.93 -0.33 0.75 16 32 H 0.03 0.47 8.12 -51.93 -0.42 0.04 16 33 H 0.09 1.36 5.69 -51.93 -0.30 1.07 16 34 H 0.04 0.51 8.00 -51.93 -0.42 0.09 16 35 H 0.09 0.55 6.88 -51.93 -0.36 0.19 16 36 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.40 1.17 8.83 -40.82 -0.36 0.81 16 38 H 0.40 2.25 8.93 -40.82 -0.36 1.89 16 39 H 0.04 0.43 7.90 -51.93 -0.41 0.02 16 40 H 0.08 0.63 6.53 -51.93 -0.34 0.29 16 41 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 43 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 44 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 45 H 0.12 1.16 7.99 -52.48 -0.42 0.74 16 LS Contribution 384.80 15.07 5.80 5.80 Total: -1.00 -35.65 384.80 -10.89 -46.54 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.96 Total: 2.24 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: -2.48 Total: -19.34 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: -0.02 Total: -38.10 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.24 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -2.30 Total: -5.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.65 -10.89 -46.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080722128.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.189 kcal (2) G-P(sol) polarization free energy of solvation -35.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds