Wall clock time and date at job start Tue Mar 31 2020 12:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46961 * 2 1 4 4 C 1.36940 * 119.99816 * 273.88335 * 3 2 1 5 5 H 1.08000 * 119.99540 * 185.93852 * 4 3 2 6 6 C 1.38804 * 120.00051 * 5.92777 * 4 3 2 7 7 N 1.31627 * 120.00236 * 13.64678 * 6 4 3 8 8 Si 1.86804 * 120.00119 * 193.64438 * 6 4 3 9 9 H 1.48494 * 109.46880 * 60.00122 * 8 6 4 10 10 H 1.48500 * 109.47073 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46946 * 300.00374 * 8 6 4 12 12 C 1.46497 * 120.00092 * 93.88384 * 3 2 1 13 13 C 1.50699 * 109.47239 * 96.68508 * 12 3 2 14 14 C 1.36995 * 120.18218 * 95.23966 * 13 12 3 15 15 C 1.39993 * 118.18238 * 180.02562 * 14 13 12 16 16 C 1.45862 * 134.24392 * 180.02562 * 15 14 13 17 17 N 1.30233 * 107.65686 * 180.02562 * 16 15 14 18 18 N 1.39831 * 110.09613 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.39387 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46763 * 299.95992 * 19 18 17 21 21 C 1.53007 * 109.46939 * 59.95526 * 19 18 17 22 22 C 1.36829 * 109.22479 * 359.97438 * 18 17 16 23 23 N 1.32757 * 133.55932 * 180.02562 * 22 18 17 24 24 C 1.31634 * 121.45430 * 180.02562 * 23 22 18 25 25 Cl 1.73602 * 119.22446 * 180.27487 * 24 23 22 26 26 H 1.09004 * 109.47350 * 300.00368 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.00127 * 1 2 3 28 28 H 1.08995 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47525 * 240.00082 * 2 1 3 30 30 H 1.08996 * 109.47302 * 119.99515 * 2 1 3 31 31 H 0.96999 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47097 * 336.69017 * 12 3 2 33 33 H 1.09002 * 109.47032 * 216.68651 * 12 3 2 34 34 H 1.08001 * 120.90970 * 0.04483 * 14 13 12 35 35 H 1.08001 * 126.17181 * 359.97438 * 16 15 14 36 36 H 1.08995 * 109.47612 * 179.97438 * 19 18 17 37 37 H 1.09004 * 109.47286 * 299.99562 * 20 19 18 38 38 H 1.09001 * 109.47616 * 59.99793 * 20 19 18 39 39 H 1.09002 * 109.47106 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47237 * 59.99996 * 21 19 18 41 41 H 1.08994 * 109.46994 * 180.02562 * 21 19 18 42 42 H 1.09008 * 109.46560 * 300.00223 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1708 2.0536 -1.1832 5 1 2.6201 3.0356 -1.1922 6 6 1.7480 1.4728 -2.3709 7 7 0.9675 0.4132 -2.3442 8 14 2.2865 2.1950 -4.0074 9 1 3.7682 2.1618 -4.0994 10 1 1.7032 1.3978 -5.1162 11 1 1.8156 3.5998 -4.1074 12 6 2.3434 2.0433 1.2658 13 6 3.8248 1.9379 1.5217 14 6 4.6612 2.9595 1.1563 15 6 6.0300 2.8173 1.4134 16 6 7.2014 3.6550 1.1816 17 7 8.2418 3.0116 1.6285 18 7 7.8529 1.7760 2.1551 19 6 8.7543 0.7842 2.7469 20 6 9.7850 0.3459 1.7047 21 6 9.4740 1.4016 3.9477 22 6 6.4970 1.6401 2.0314 23 7 5.6395 0.6825 2.3631 24 6 4.3501 0.8032 2.1273 25 17 3.2795 -0.4821 2.5918 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.6717 0.0076 -3.1741 32 1 1.7993 1.5614 2.0781 33 1 2.0581 3.0938 1.2102 34 1 4.2752 3.8503 0.6832 35 1 7.2054 4.6322 0.7217 36 1 8.1780 -0.0812 3.0740 37 1 9.2724 -0.0939 0.8492 38 1 10.3614 1.2112 1.3773 39 1 10.4560 -0.3916 2.1451 40 1 8.7397 1.7140 4.6902 41 1 10.1449 0.6639 4.3878 42 1 10.0504 2.2670 3.6203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092398704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:43 Heat of formation + Delta-G solvation = 130.030694 kcal Electronic energy + Delta-G solvation = -25322.062396 eV Core-core repulsion = 21752.068088 eV Total energy + Delta-G solvation = -3569.994307 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42763 -38.48653 -36.23595 -35.99294 -35.49355 -33.05305 -31.15165 -30.05507 -29.86725 -28.55949 -27.44978 -25.61753 -23.75232 -23.27573 -22.97012 -21.67008 -20.09331 -19.72495 -17.85426 -16.97863 -16.42416 -15.83721 -15.59756 -15.12782 -14.81794 -14.46834 -13.89624 -13.87348 -13.39740 -13.27256 -13.09935 -12.81421 -12.72025 -12.38316 -12.33509 -12.09266 -11.72145 -11.57195 -11.41001 -11.33524 -11.11570 -10.86320 -10.74337 -10.68364 -10.56323 -10.39133 -10.21307 -9.89067 -9.62153 -9.37575 -9.17482 -8.62008 -8.26915 -7.96443 -6.82812 -5.63076 -3.08358 0.87152 1.54615 1.85253 2.43692 2.53475 3.38714 3.45437 3.46128 3.89092 4.25897 4.45775 4.51565 4.71086 4.79169 4.82164 4.97689 5.14113 5.28754 5.34713 5.38236 5.48779 5.55153 5.59982 5.65912 5.68971 5.83780 5.96234 5.99122 6.08278 6.37434 6.55604 6.67822 6.72010 6.77961 6.90618 7.09115 7.20355 7.38268 7.52437 7.65689 7.93465 7.95007 8.33366 8.42171 9.30342 9.88134 10.31138 11.30694 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004416 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.212106 B = 6338.810652 C = 7406.502593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.160 3.840 3 N -0.588 5.588 4 C -0.242 4.242 5 H 0.072 0.928 6 C -0.005 4.005 7 N -0.900 5.900 8 Si 0.902 3.098 9 H -0.287 1.287 10 H -0.291 1.291 11 H -0.285 1.285 12 C 0.189 3.811 13 C -0.154 4.154 14 C 0.023 3.977 15 C -0.224 4.224 16 C 0.084 3.916 17 N -0.242 5.242 18 N -0.390 5.390 19 C 0.165 3.835 20 C -0.161 4.161 21 C -0.159 4.159 22 C 0.318 3.682 23 N -0.510 5.510 24 C 0.255 3.745 25 Cl -0.016 7.016 26 H 0.002 0.998 27 H 0.097 0.903 28 H 0.014 0.986 29 H 0.085 0.915 30 H 0.018 0.982 31 H 0.250 0.750 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.146 0.854 35 H 0.199 0.801 36 H 0.105 0.895 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.786 2.584 10.940 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.036 3.964 3 N -0.307 5.307 4 C -0.371 4.371 5 H 0.090 0.910 6 C -0.201 4.201 7 N -0.548 5.548 8 Si 0.733 3.267 9 H -0.214 1.214 10 H -0.217 1.217 11 H -0.212 1.212 12 C 0.060 3.940 13 C -0.162 4.162 14 C -0.007 4.007 15 C -0.234 4.234 16 C -0.115 4.115 17 N -0.054 5.054 18 N -0.183 5.183 19 C 0.064 3.936 20 C -0.218 4.218 21 C -0.217 4.217 22 C 0.080 3.920 23 N -0.228 5.228 24 C 0.080 3.920 25 Cl 0.013 6.987 26 H 0.021 0.979 27 H 0.116 0.884 28 H 0.033 0.967 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.163 0.837 35 H 0.216 0.784 36 H 0.123 0.877 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.360 1.512 11.438 17.652 hybrid contribution -0.850 0.726 -1.447 1.828 sum 12.510 2.238 9.991 16.166 Atomic orbital electron populations 1.22509 0.99146 0.97869 1.00831 1.21146 0.92627 0.83838 0.98803 1.44193 1.74495 1.11690 1.00371 1.19239 1.33353 1.00191 0.84300 0.90978 1.24759 0.99187 0.98467 0.97706 1.70217 1.35663 1.23969 1.24918 0.86358 0.78347 0.78109 0.83933 1.21423 1.21698 1.21172 1.19680 0.86211 0.97972 0.90119 1.21413 1.02601 0.92588 0.99615 1.20592 0.89317 0.98260 0.92531 1.20568 0.95555 0.97305 1.09998 1.24968 0.87893 0.99720 0.98909 1.76558 1.23597 0.92291 1.12942 1.48319 1.01845 1.14699 1.53446 1.21232 0.90619 0.88693 0.93090 1.22143 0.98646 1.02111 0.98948 1.22136 1.00721 1.01926 0.96913 1.18468 0.86017 0.91041 0.96502 1.65717 1.01988 1.30257 1.24792 1.21304 0.87305 0.89218 0.94197 1.98391 1.60177 1.49946 1.90211 0.97912 0.88430 0.96670 0.89666 0.96438 0.93946 0.92129 0.92507 0.83659 0.78440 0.87721 0.92100 0.91324 0.90870 0.92256 0.90879 0.91326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.53 37.16 0.35 -3.02 16 2 C 0.16 3.80 5.63 -4.04 -0.02 3.78 16 3 N -0.59 -13.79 2.54 -174.62 -0.44 -14.23 16 4 C -0.24 -6.18 9.75 -15.06 -0.15 -6.32 16 5 H 0.07 1.76 7.87 -52.49 -0.41 1.35 16 6 C -0.01 -0.14 5.22 -17.43 -0.09 -0.23 16 7 N -0.90 -24.54 7.40 55.49 0.41 -24.13 16 8 Si 0.90 21.25 29.58 -169.99 -5.03 16.23 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.19 3.65 5.36 -5.20 -0.03 3.62 16 13 C -0.15 -2.80 5.39 -104.82 -0.57 -3.36 16 14 C 0.02 0.37 9.81 -39.37 -0.39 -0.02 16 15 C -0.22 -3.60 6.38 -105.18 -0.67 -4.27 16 16 C 0.08 1.10 12.29 -15.18 -0.19 0.92 16 17 N -0.24 -3.44 12.21 31.85 0.39 -3.05 16 18 N -0.39 -5.82 3.32 -53.93 -0.18 -6.00 16 19 C 0.17 1.96 3.67 -67.93 -0.25 1.71 16 20 C -0.16 -1.66 9.44 37.16 0.35 -1.31 16 21 C -0.16 -1.53 9.44 37.16 0.35 -1.18 16 22 C 0.32 5.47 7.92 -156.11 -1.24 4.24 16 23 N -0.51 -9.32 10.36 -9.46 -0.10 -9.42 16 24 C 0.25 4.70 7.26 -17.38 -0.13 4.57 16 25 Cl -0.02 -0.28 24.43 -51.86 -1.27 -1.54 16 26 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 27 H 0.10 2.57 5.87 -51.93 -0.30 2.27 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.09 2.32 5.98 -51.93 -0.31 2.00 16 30 H 0.02 0.38 4.56 -51.93 -0.24 0.14 16 31 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 32 H 0.06 1.11 6.98 -51.93 -0.36 0.75 16 33 H 0.06 1.03 8.00 -51.93 -0.42 0.61 16 34 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.20 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.10 1.28 8.05 -51.93 -0.42 0.86 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 LS Contribution 355.12 15.07 5.35 5.35 Total: -1.00 -29.40 355.12 -9.34 -38.74 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -5.82 Total: -1.06 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -2.65 Total: -0.88 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: 0.08 Total: -56.84 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.03 Total: 16.23 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -1.27 Total: -1.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.40 -9.34 -38.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.773 kcal (2) G-P(sol) polarization free energy of solvation -29.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds