Wall clock time and date at job start Tue Mar 31 2020 12:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.46961 * 2 1 4 4 C 1.36940 * 119.99816 * 273.88335 * 3 2 1 5 5 H 1.08000 * 119.99540 * 185.93852 * 4 3 2 6 6 C 1.38804 * 120.00051 * 5.92777 * 4 3 2 7 7 N 1.31627 * 120.00236 * 13.64678 * 6 4 3 8 8 Si 1.86804 * 120.00119 * 193.64438 * 6 4 3 9 9 H 1.48494 * 109.46880 * 60.00122 * 8 6 4 10 10 H 1.48500 * 109.47073 * 180.02562 * 8 6 4 11 11 H 1.48495 * 109.46946 * 300.00374 * 8 6 4 12 12 C 1.46497 * 120.00092 * 93.88384 * 3 2 1 13 13 C 1.50699 * 109.47239 * 96.68508 * 12 3 2 14 14 C 1.36995 * 120.18218 * 95.23966 * 13 12 3 15 15 C 1.39993 * 118.18238 * 180.02562 * 14 13 12 16 16 C 1.45862 * 134.24392 * 180.02562 * 15 14 13 17 17 N 1.30233 * 107.65686 * 180.02562 * 16 15 14 18 18 N 1.39831 * 110.09613 * 0.02562 * 17 16 15 19 19 C 1.46501 * 125.39387 * 180.02562 * 18 17 16 20 20 C 1.52998 * 109.46763 * 299.95992 * 19 18 17 21 21 C 1.53007 * 109.46939 * 59.95526 * 19 18 17 22 22 C 1.36829 * 109.22479 * 359.97438 * 18 17 16 23 23 N 1.32757 * 133.55932 * 180.02562 * 22 18 17 24 24 C 1.31634 * 121.45430 * 180.02562 * 23 22 18 25 25 Cl 1.73602 * 119.22446 * 180.27487 * 24 23 22 26 26 H 1.09004 * 109.47350 * 300.00368 * 1 2 3 27 27 H 1.09003 * 109.47242 * 60.00127 * 1 2 3 28 28 H 1.08995 * 109.47042 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47525 * 240.00082 * 2 1 3 30 30 H 1.08996 * 109.47302 * 119.99515 * 2 1 3 31 31 H 0.96999 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47097 * 336.69017 * 12 3 2 33 33 H 1.09002 * 109.47032 * 216.68651 * 12 3 2 34 34 H 1.08001 * 120.90970 * 0.04483 * 14 13 12 35 35 H 1.08001 * 126.17181 * 359.97438 * 16 15 14 36 36 H 1.08995 * 109.47612 * 179.97438 * 19 18 17 37 37 H 1.09004 * 109.47286 * 299.99562 * 20 19 18 38 38 H 1.09001 * 109.47616 * 59.99793 * 20 19 18 39 39 H 1.09002 * 109.47106 * 179.97438 * 20 19 18 40 40 H 1.09000 * 109.47237 * 59.99996 * 21 19 18 41 41 H 1.08994 * 109.46994 * 180.02562 * 21 19 18 42 42 H 1.09008 * 109.46560 * 300.00223 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1708 2.0536 -1.1832 5 1 2.6201 3.0356 -1.1922 6 6 1.7480 1.4728 -2.3709 7 7 0.9675 0.4132 -2.3442 8 14 2.2865 2.1950 -4.0074 9 1 3.7682 2.1618 -4.0994 10 1 1.7032 1.3978 -5.1162 11 1 1.8156 3.5998 -4.1074 12 6 2.3434 2.0433 1.2658 13 6 3.8248 1.9379 1.5217 14 6 4.6612 2.9595 1.1563 15 6 6.0300 2.8173 1.4134 16 6 7.2014 3.6550 1.1816 17 7 8.2418 3.0116 1.6285 18 7 7.8529 1.7760 2.1551 19 6 8.7543 0.7842 2.7469 20 6 9.7850 0.3459 1.7047 21 6 9.4740 1.4016 3.9477 22 6 6.4970 1.6401 2.0314 23 7 5.6395 0.6825 2.3631 24 6 4.3501 0.8032 2.1273 25 17 3.2795 -0.4821 2.5918 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 0.6717 0.0076 -3.1741 32 1 1.7993 1.5614 2.0781 33 1 2.0581 3.0938 1.2102 34 1 4.2752 3.8503 0.6832 35 1 7.2054 4.6322 0.7217 36 1 8.1780 -0.0812 3.0740 37 1 9.2724 -0.0939 0.8492 38 1 10.3614 1.2112 1.3773 39 1 10.4560 -0.3916 2.1451 40 1 8.7397 1.7140 4.6902 41 1 10.1449 0.6639 4.3878 42 1 10.0504 2.2670 3.6203 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092398704.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:42 Heat of formation + Delta-G solvation = 115.660174 kcal Electronic energy + Delta-G solvation = -25322.685548 eV Core-core repulsion = 21752.068088 eV Total energy + Delta-G solvation = -3570.617460 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 322.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.62494 -39.77437 -37.72644 -37.55152 -36.49184 -34.52213 -32.82305 -31.46890 -31.20483 -30.17587 -28.24410 -27.21880 -25.10074 -24.96575 -24.03404 -23.13157 -21.82348 -20.81104 -18.98391 -18.59881 -17.96094 -17.19352 -16.98743 -16.62193 -16.03316 -15.52973 -15.48102 -15.21827 -14.82926 -14.62734 -14.42600 -14.20927 -13.86838 -13.82902 -13.25625 -13.23673 -13.15356 -13.11822 -12.71701 -12.59048 -12.44325 -12.43532 -12.35462 -12.23105 -12.17795 -11.81332 -11.79661 -11.55126 -11.32272 -10.97090 -10.71424 -10.19419 -9.86403 -9.24540 -8.68227 -7.59068 -5.04201 -0.38797 0.22901 0.57434 1.27999 1.41734 1.52170 1.55284 1.59262 2.52256 2.66093 3.19751 3.24794 3.45054 3.60818 3.78796 3.86964 3.93261 3.94543 4.07587 4.15216 4.37764 4.48364 4.63434 4.65605 4.71036 4.76232 4.84021 4.91716 5.02907 5.09323 5.16691 5.22096 5.28441 5.30583 5.35609 5.48259 5.52772 5.69154 5.75695 5.99201 6.34991 6.39633 6.47378 6.68565 7.34515 8.02276 8.41684 9.33148 Molecular weight = 322.13amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004416 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.212106 B = 6338.810652 C = 7406.502593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.166 3.834 3 N -0.601 5.601 4 C -0.239 4.239 5 H 0.083 0.917 6 C -0.059 4.059 7 N -0.922 5.922 8 Si 0.956 3.044 9 H -0.291 1.291 10 H -0.303 1.303 11 H -0.276 1.276 12 C 0.192 3.808 13 C -0.171 4.171 14 C 0.031 3.969 15 C -0.236 4.236 16 C 0.097 3.903 17 N -0.248 5.248 18 N -0.393 5.393 19 C 0.154 3.846 20 C -0.152 4.152 21 C -0.149 4.149 22 C 0.299 3.701 23 N -0.525 5.525 24 C 0.241 3.759 25 Cl -0.017 7.017 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.021 0.979 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.239 0.761 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.170 0.830 35 H 0.242 0.758 36 H 0.096 0.904 37 H 0.040 0.960 38 H 0.067 0.933 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.100 0.900 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.612 4.193 11.670 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.041 3.959 3 N -0.322 5.322 4 C -0.369 4.369 5 H 0.101 0.899 6 C -0.252 4.252 7 N -0.572 5.572 8 Si 0.786 3.214 9 H -0.218 1.218 10 H -0.230 1.230 11 H -0.202 1.202 12 C 0.065 3.935 13 C -0.179 4.179 14 C 0.002 3.998 15 C -0.246 4.246 16 C -0.101 4.101 17 N -0.060 5.060 18 N -0.185 5.185 19 C 0.053 3.947 20 C -0.210 4.210 21 C -0.207 4.207 22 C 0.059 3.941 23 N -0.243 5.243 24 C 0.066 3.934 25 Cl 0.012 6.988 26 H 0.033 0.967 27 H 0.087 0.913 28 H 0.040 0.960 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.187 0.813 35 H 0.258 0.742 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.120 0.880 40 H 0.067 0.933 41 H 0.119 0.881 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.229 3.144 12.210 19.771 hybrid contribution -1.295 0.263 -1.561 2.045 sum 13.934 3.407 10.649 17.865 Atomic orbital electron populations 1.22339 0.99011 0.98050 0.99874 1.20950 0.92685 0.84354 0.97863 1.44316 1.75052 1.11501 1.01329 1.19579 1.31828 1.00453 0.85021 0.89908 1.25373 1.00147 0.99442 1.00211 1.70419 1.37034 1.25241 1.24463 0.85494 0.77377 0.77668 0.80815 1.21783 1.22988 1.20182 1.19753 0.87002 0.98333 0.88448 1.21232 1.01834 0.93461 1.01400 1.20875 0.89368 0.98393 0.91118 1.20875 0.96188 0.97626 1.09884 1.25666 0.86081 1.00666 0.97672 1.76570 1.24017 0.92164 1.13245 1.48701 1.01360 1.15290 1.53190 1.21532 0.90610 0.88225 0.94332 1.22095 0.98344 1.02635 0.97932 1.22071 1.00517 1.02498 0.95566 1.18861 0.87040 0.91415 0.96765 1.65689 1.02098 1.31051 1.25451 1.21423 0.87619 0.89466 0.94846 1.98376 1.60232 1.50017 1.90182 0.96691 0.91266 0.95976 0.93349 0.94545 0.95078 0.91528 0.91096 0.81284 0.74169 0.88597 0.94102 0.91408 0.87987 0.93340 0.88105 0.91430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 9.53 71.98 0.69 -5.58 16 2 C 0.17 7.95 5.63 86.38 0.49 8.43 16 3 N -0.60 -27.88 2.54 -706.37 -1.79 -29.67 16 4 C -0.24 -12.04 9.75 84.03 0.82 -11.22 16 5 H 0.08 3.90 7.87 -2.91 -0.02 3.87 16 6 C -0.06 -3.11 5.22 84.86 0.44 -2.66 16 7 N -0.92 -51.41 7.40 21.65 0.16 -51.25 16 8 Si 0.96 43.87 29.58 68.60 2.03 45.90 16 9 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 12 C 0.19 7.15 5.36 85.63 0.46 7.61 16 13 C -0.17 -6.01 5.39 -19.99 -0.11 -6.12 16 14 C 0.03 0.96 9.81 22.40 0.22 1.18 16 15 C -0.24 -7.06 6.38 -20.22 -0.13 -7.19 16 16 C 0.10 2.26 12.29 86.90 1.07 3.33 16 17 N -0.25 -6.46 12.21 -53.14 -0.65 -7.11 16 18 N -0.39 -11.17 3.32 -324.54 -1.08 -12.25 16 19 C 0.15 3.43 3.67 44.99 0.17 3.60 16 20 C -0.15 -2.89 9.44 71.98 0.68 -2.21 16 21 C -0.15 -2.55 9.44 71.98 0.68 -1.87 16 22 C 0.30 9.95 7.92 134.12 1.06 11.01 16 23 N -0.53 -19.01 10.36 -183.83 -1.91 -20.92 16 24 C 0.24 8.78 7.26 84.89 0.62 9.40 16 25 Cl -0.02 -0.58 24.43 -2.72 -0.07 -0.64 16 26 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.07 3.70 5.87 -2.39 -0.01 3.69 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 2.69 5.98 -2.39 -0.01 2.68 16 30 H 0.04 1.58 4.56 -2.39 -0.01 1.57 16 31 H 0.24 13.32 8.31 -92.71 -0.77 12.55 16 32 H 0.07 2.37 6.98 -2.39 -0.02 2.35 16 33 H 0.07 2.42 8.00 -2.39 -0.02 2.40 16 34 H 0.17 4.24 8.06 -2.91 -0.02 4.21 16 35 H 0.24 3.18 8.06 -2.91 -0.02 3.16 16 36 H 0.10 2.29 8.05 -2.39 -0.02 2.27 16 37 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 Total: -1.00 -63.79 355.12 4.88 -58.91 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: 1.03 Total: 9.32 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 7.15 Total: 7.71 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -5.26 Total: -121.20 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.07 Total: -0.64 kcal Total: -63.79 4.88 -58.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092398704.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.573 kcal (2) G-P(sol) polarization free energy of solvation -63.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds