Wall clock time and date at job start Tue Mar 31 2020 13:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47446 * 274.97493 * 3 2 1 5 5 H 1.48500 * 109.46978 * 34.97670 * 3 2 1 6 6 H 1.48507 * 109.47012 * 154.97312 * 3 2 1 7 7 C 1.37880 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99664 * 174.45438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 354.45841 * 7 2 1 10 10 N 1.46893 * 109.47387 * 182.60256 * 9 7 2 11 11 C 1.46904 * 111.00206 * 71.70700 * 10 9 7 12 12 C 1.50704 * 109.47358 * 198.56711 * 11 10 9 13 13 C 1.33991 * 126.90869 * 254.57399 * 12 11 10 14 14 O 1.34444 * 110.15598 * 179.97438 * 13 12 11 15 15 C 1.34802 * 110.88735 * 359.97438 * 14 13 12 16 16 C 1.38949 * 133.48828 * 179.97438 * 15 14 13 17 17 C 1.37851 * 119.81148 * 179.97438 * 16 15 14 18 18 C 1.38745 * 120.68711 * 0.02562 * 17 16 15 19 19 C 1.36734 * 120.41958 * 359.97438 * 18 17 16 20 20 C 1.39407 * 119.71613 * 359.75645 * 19 18 17 21 21 C 1.46904 * 111.00439 * 195.66185 * 10 9 7 22 22 C 1.50696 * 109.46517 * 66.04291 * 21 10 9 23 23 C 1.38231 * 119.61833 * 94.98469 * 22 21 10 24 24 C 1.38630 * 119.16043 * 179.78390 * 23 22 21 25 25 C 1.38665 * 118.42043 * 0.47412 * 24 23 22 26 26 C 1.38184 * 119.16474 * 359.50586 * 25 24 23 27 27 N 1.31854 * 119.62019 * 274.99653 * 22 21 10 28 28 H 0.96998 * 120.00101 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47209 * 62.59835 * 9 7 2 30 30 H 1.08998 * 109.46812 * 302.60071 * 9 7 2 31 31 H 1.09007 * 109.46915 * 318.56585 * 11 10 9 32 32 H 1.08996 * 109.47338 * 78.56215 * 11 10 9 33 33 H 1.08006 * 124.92174 * 359.95671 * 13 12 11 34 34 H 1.07994 * 120.09294 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.65272 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.78540 * 179.97438 * 18 17 16 37 37 H 1.07994 * 120.14161 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46752 * 306.04912 * 21 10 9 39 39 H 1.08997 * 109.47062 * 186.04266 * 21 10 9 40 40 H 1.08000 * 120.42069 * 359.97438 * 23 22 21 41 41 H 1.08002 * 120.78661 * 180.23354 * 24 23 22 42 42 H 1.08001 * 120.42076 * 179.77605 * 25 24 23 43 43 H 1.07997 * 119.61759 * 180.25377 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3915 2.1072 -1.3947 5 1 1.5031 2.6200 0.8026 6 1 3.5953 1.4121 0.5923 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1962 -0.0909 9 6 1.2563 -2.4962 0.1249 10 7 2.2138 -3.6096 0.1612 11 6 2.9405 -3.6377 1.4375 12 6 4.1926 -4.4624 1.2847 13 6 4.4039 -5.6991 1.7551 14 8 5.6387 -6.1158 1.4244 15 6 6.2928 -5.1701 0.7209 16 6 7.5612 -5.1034 0.1577 17 6 7.9509 -3.9685 -0.5210 18 6 7.0891 -2.8886 -0.6482 19 6 5.8367 -2.9340 -0.1013 20 6 5.4229 -4.0754 0.5838 21 6 1.5408 -4.8911 -0.0897 22 6 1.0165 -4.9149 -1.5023 23 6 1.7758 -5.4915 -2.5033 24 6 1.2823 -5.5122 -3.7986 25 6 0.0424 -4.9408 -4.0416 26 6 -0.6597 -4.3829 -2.9903 27 7 -0.1611 -4.3853 -1.7693 28 1 -0.4850 0.8400 -0.0004 29 1 0.5910 -2.6168 -0.7300 30 1 0.6700 -2.4912 1.0437 31 1 3.2081 -2.6210 1.7257 32 1 2.3067 -4.0785 2.2069 33 1 3.6865 -6.2773 2.3186 34 1 8.2398 -5.9382 0.2512 35 1 8.9375 -3.9192 -0.9574 36 1 7.4096 -2.0065 -1.1826 37 1 5.1695 -2.0910 -0.2033 38 1 0.7115 -5.0086 0.6077 39 1 2.2502 -5.7071 0.0484 40 1 2.7399 -5.9231 -2.2785 41 1 1.8517 -5.9592 -4.6000 42 1 -0.3713 -4.9357 -5.0392 43 1 -1.6279 -3.9396 -3.1706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093100408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:35 Heat of formation + Delta-G solvation = 78.213452 kcal Electronic energy + Delta-G solvation = -26682.273465 eV Core-core repulsion = 23080.172292 eV Total energy + Delta-G solvation = -3602.101173 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16970 -39.79642 -37.59627 -36.78668 -33.06004 -32.57860 -31.97070 -31.08627 -30.17523 -29.27453 -27.35839 -26.42745 -24.03468 -23.10153 -23.02265 -22.03703 -21.89045 -20.43767 -19.44490 -17.08530 -16.73121 -16.46671 -16.39020 -15.86986 -15.74496 -15.50045 -15.20145 -14.64705 -14.48190 -13.88150 -13.70067 -13.61117 -13.41622 -13.01278 -12.87859 -12.52143 -12.20930 -12.10305 -12.03375 -11.79054 -11.65236 -11.33341 -11.05645 -10.94673 -10.63052 -10.53700 -10.44575 -9.94097 -9.63134 -9.45426 -9.26253 -8.86466 -8.60030 -8.39670 -8.32264 -7.87607 -7.28359 -5.96761 -3.97045 1.17274 1.51311 1.60890 1.69055 2.61491 3.03360 3.32379 3.39258 3.42042 3.98226 4.16719 4.46364 4.74909 4.75548 4.87373 5.04917 5.11795 5.15683 5.18490 5.36395 5.37934 5.42106 5.45330 5.51740 5.58777 5.69658 5.81746 5.84876 5.91237 5.99950 6.07319 6.17832 6.25566 6.40920 6.47017 6.50183 6.55848 6.57783 6.72893 6.81444 6.90207 7.09029 7.32747 7.41382 7.46766 7.85329 8.19778 8.20541 8.51254 8.57007 9.09933 9.65169 11.13341 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.005684 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.297990 B = 4925.037307 C = 6950.345719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.185 3.815 10 N -0.522 5.522 11 C 0.126 3.874 12 C -0.139 4.139 13 C -0.019 4.019 14 O -0.200 6.200 15 C 0.044 3.956 16 C -0.119 4.119 17 C -0.097 4.097 18 C -0.147 4.147 19 C -0.048 4.048 20 C -0.106 4.106 21 C 0.101 3.899 22 C 0.154 3.846 23 C -0.157 4.157 24 C -0.082 4.082 25 C -0.185 4.185 26 C 0.102 3.898 27 N -0.463 5.463 28 H 0.259 0.741 29 H 0.058 0.942 30 H -0.009 1.009 31 H 0.099 0.901 32 H 0.035 0.965 33 H 0.201 0.799 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.137 0.863 38 H 0.042 0.958 39 H 0.073 0.927 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.127 0.873 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.665 -12.530 -2.524 15.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.545 4.545 8 H 0.078 0.922 9 C 0.060 3.940 10 N -0.247 5.247 11 C -0.001 4.001 12 C -0.141 4.141 13 C -0.084 4.084 14 O -0.101 6.101 15 C -0.003 4.003 16 C -0.138 4.138 17 C -0.115 4.115 18 C -0.165 4.165 19 C -0.066 4.066 20 C -0.107 4.107 21 C -0.028 4.028 22 C 0.016 3.984 23 C -0.178 4.178 24 C -0.108 4.108 25 C -0.205 4.205 26 C -0.055 4.055 27 N -0.172 5.172 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.009 0.991 31 H 0.117 0.883 32 H 0.053 0.947 33 H 0.218 0.782 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.145 0.855 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 8.468 -12.195 -2.134 15.000 hybrid contribution 0.161 0.649 -0.242 0.711 sum 8.629 -11.546 -2.375 14.609 Atomic orbital electron populations 1.69989 1.05923 1.26443 1.50779 1.24946 0.94766 0.98968 0.95710 0.86627 0.79965 0.83795 0.77901 1.20891 1.21297 1.19784 1.21141 0.93674 0.90095 1.49545 0.92157 1.19972 0.90062 0.86473 0.97477 1.62105 1.29545 1.02181 1.30902 1.20366 0.89251 0.99671 0.90851 1.21393 0.96303 0.95394 1.00995 1.23669 0.85190 0.95854 1.03686 1.83946 1.25336 1.40461 1.60405 1.19663 0.94781 0.88216 0.97608 1.19788 0.92435 0.99790 1.01755 1.20848 0.99610 0.92567 0.98490 1.20774 0.94271 0.99174 1.02277 1.20575 0.95496 0.96912 0.93581 1.19763 0.93653 0.95446 1.01855 1.20931 0.96609 0.94500 0.90761 1.21102 0.89614 0.91467 0.96181 1.21850 1.00572 1.01888 0.93442 1.21457 0.95398 0.97280 0.96683 1.22025 0.96534 1.01525 1.00437 1.22713 0.99423 0.95339 0.88056 1.67588 1.13195 1.13740 1.22679 0.93100 0.92411 0.99150 0.88284 0.94702 0.78195 0.85757 0.85417 0.85740 0.84555 0.93956 0.90846 0.85444 0.85537 0.85482 0.83222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.59 13.30 55.43 0.74 -25.85 16 2 C 0.06 1.63 5.45 -17.82 -0.10 1.53 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.98 8.31 -34.44 -0.29 -14.26 16 8 H 0.06 1.64 7.27 -52.48 -0.38 1.26 16 9 C 0.18 4.76 4.60 -4.98 -0.02 4.74 16 10 N -0.52 -10.95 4.37 -238.97 -1.04 -12.00 16 11 C 0.13 2.35 5.38 -4.97 -0.03 2.33 16 12 C -0.14 -2.30 5.17 -102.66 -0.53 -2.83 16 13 C -0.02 -0.26 11.45 29.24 0.33 0.07 16 14 O -0.20 -2.98 10.58 3.94 0.04 -2.94 16 15 C 0.04 0.69 7.42 -38.47 -0.29 0.40 16 16 C -0.12 -1.55 10.07 -39.46 -0.40 -1.95 16 17 C -0.10 -1.18 10.01 -39.54 -0.40 -1.57 16 18 C -0.15 -2.03 9.98 -39.94 -0.40 -2.43 16 19 C -0.05 -0.80 10.05 -39.69 -0.40 -1.20 16 20 C -0.11 -1.81 6.38 -105.16 -0.67 -2.48 16 21 C 0.10 1.84 5.11 -4.98 -0.03 1.82 16 22 C 0.15 2.89 5.75 -82.59 -0.47 2.42 16 23 C -0.16 -2.53 9.72 -39.44 -0.38 -2.92 16 24 C -0.08 -1.16 10.18 -39.28 -0.40 -1.56 16 25 C -0.19 -2.62 10.11 -39.44 -0.40 -3.01 16 26 C 0.10 1.71 11.18 -17.55 -0.20 1.52 16 27 N -0.46 -9.26 8.50 -9.47 -0.08 -9.34 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.06 1.62 5.61 -51.93 -0.29 1.33 16 30 H -0.01 -0.26 8.06 -51.93 -0.42 -0.68 16 31 H 0.10 2.06 7.07 -51.93 -0.37 1.69 16 32 H 0.03 0.59 8.01 -51.93 -0.42 0.18 16 33 H 0.20 2.01 8.06 -52.48 -0.42 1.59 16 34 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.14 2.51 7.59 -52.49 -0.40 2.11 16 38 H 0.04 0.79 8.12 -51.93 -0.42 0.37 16 39 H 0.07 1.16 6.93 -51.93 -0.36 0.80 16 40 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 42 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 43 H 0.15 2.17 8.06 -52.49 -0.42 1.74 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -32.62 365.37 -10.49 -43.11 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -5.57 Total: 4.35 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -5.05 Total: -19.39 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.39 Total: -47.19 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.62 -10.49 -43.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.320 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds