Wall clock time and date at job start Tue Mar 31 2020 13:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00014 * 2 1 4 4 H 1.48496 * 109.47446 * 274.97493 * 3 2 1 5 5 H 1.48500 * 109.46978 * 34.97670 * 3 2 1 6 6 H 1.48507 * 109.47012 * 154.97312 * 3 2 1 7 7 C 1.37880 * 119.99863 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99664 * 174.45438 * 7 2 1 9 9 C 1.50697 * 120.00278 * 354.45841 * 7 2 1 10 10 N 1.46893 * 109.47387 * 182.60256 * 9 7 2 11 11 C 1.46904 * 111.00206 * 71.70700 * 10 9 7 12 12 C 1.50704 * 109.47358 * 198.56711 * 11 10 9 13 13 C 1.33991 * 126.90869 * 254.57399 * 12 11 10 14 14 O 1.34444 * 110.15598 * 179.97438 * 13 12 11 15 15 C 1.34802 * 110.88735 * 359.97438 * 14 13 12 16 16 C 1.38949 * 133.48828 * 179.97438 * 15 14 13 17 17 C 1.37851 * 119.81148 * 179.97438 * 16 15 14 18 18 C 1.38745 * 120.68711 * 0.02562 * 17 16 15 19 19 C 1.36734 * 120.41958 * 359.97438 * 18 17 16 20 20 C 1.39407 * 119.71613 * 359.75645 * 19 18 17 21 21 C 1.46904 * 111.00439 * 195.66185 * 10 9 7 22 22 C 1.50696 * 109.46517 * 66.04291 * 21 10 9 23 23 C 1.38231 * 119.61833 * 94.98469 * 22 21 10 24 24 C 1.38630 * 119.16043 * 179.78390 * 23 22 21 25 25 C 1.38665 * 118.42043 * 0.47412 * 24 23 22 26 26 C 1.38184 * 119.16474 * 359.50586 * 25 24 23 27 27 N 1.31854 * 119.62019 * 274.99653 * 22 21 10 28 28 H 0.96998 * 120.00101 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47209 * 62.59835 * 9 7 2 30 30 H 1.08998 * 109.46812 * 302.60071 * 9 7 2 31 31 H 1.09007 * 109.46915 * 318.56585 * 11 10 9 32 32 H 1.08996 * 109.47338 * 78.56215 * 11 10 9 33 33 H 1.08006 * 124.92174 * 359.95671 * 13 12 11 34 34 H 1.07994 * 120.09294 * 359.97438 * 16 15 14 35 35 H 1.08002 * 119.65272 * 179.97438 * 17 16 15 36 36 H 1.08000 * 119.78540 * 179.97438 * 18 17 16 37 37 H 1.07994 * 120.14161 * 180.02562 * 19 18 17 38 38 H 1.08997 * 109.46752 * 306.04912 * 21 10 9 39 39 H 1.08997 * 109.47062 * 186.04266 * 21 10 9 40 40 H 1.08000 * 120.42069 * 359.97438 * 23 22 21 41 41 H 1.08002 * 120.78661 * 180.23354 * 24 23 22 42 42 H 1.08001 * 120.42076 * 179.77605 * 25 24 23 43 43 H 1.07997 * 119.61759 * 180.25377 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.3915 2.1072 -1.3947 5 1 1.5031 2.6200 0.8026 6 1 3.5953 1.4121 0.5923 7 6 2.0045 -1.1941 -0.0005 8 1 3.0807 -1.1962 -0.0909 9 6 1.2563 -2.4962 0.1249 10 7 2.2138 -3.6096 0.1612 11 6 2.9405 -3.6377 1.4375 12 6 4.1926 -4.4624 1.2847 13 6 4.4039 -5.6991 1.7551 14 8 5.6387 -6.1158 1.4244 15 6 6.2928 -5.1701 0.7209 16 6 7.5612 -5.1034 0.1577 17 6 7.9509 -3.9685 -0.5210 18 6 7.0891 -2.8886 -0.6482 19 6 5.8367 -2.9340 -0.1013 20 6 5.4229 -4.0754 0.5838 21 6 1.5408 -4.8911 -0.0897 22 6 1.0165 -4.9149 -1.5023 23 6 1.7758 -5.4915 -2.5033 24 6 1.2823 -5.5122 -3.7986 25 6 0.0424 -4.9408 -4.0416 26 6 -0.6597 -4.3829 -2.9903 27 7 -0.1611 -4.3853 -1.7693 28 1 -0.4850 0.8400 -0.0004 29 1 0.5910 -2.6168 -0.7300 30 1 0.6700 -2.4912 1.0437 31 1 3.2081 -2.6210 1.7257 32 1 2.3067 -4.0785 2.2069 33 1 3.6865 -6.2773 2.3186 34 1 8.2398 -5.9382 0.2512 35 1 8.9375 -3.9192 -0.9574 36 1 7.4096 -2.0065 -1.1826 37 1 5.1695 -2.0910 -0.2033 38 1 0.7115 -5.0086 0.6077 39 1 2.2502 -5.7071 0.0484 40 1 2.7399 -5.9231 -2.2785 41 1 1.8517 -5.9592 -4.6000 42 1 -0.3713 -4.9357 -5.0392 43 1 -1.6279 -3.9396 -3.1706 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093100408.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:34 Heat of formation + Delta-G solvation = 58.974234 kcal Electronic energy + Delta-G solvation = -26683.107740 eV Core-core repulsion = 23080.172292 eV Total energy + Delta-G solvation = -3602.935448 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 322.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.31794 -41.08740 -38.68053 -38.38224 -34.85847 -34.11665 -33.22823 -32.47679 -31.31237 -30.48190 -29.20124 -27.84329 -25.80638 -24.32978 -24.16429 -23.48693 -23.12218 -21.94378 -20.75854 -18.57614 -18.13563 -17.91667 -17.66921 -17.12753 -17.05827 -16.71410 -16.55584 -16.33684 -16.00486 -15.34935 -15.15741 -14.88106 -14.60507 -14.34159 -14.10195 -14.03836 -13.73657 -13.57461 -13.21776 -13.20767 -13.11916 -12.85909 -12.61910 -12.52575 -12.36190 -12.29505 -11.86084 -11.68645 -11.34257 -10.85966 -10.72845 -10.53196 -10.17547 -9.87356 -9.50927 -9.08355 -8.95100 -8.16300 -6.24331 0.07211 0.26171 0.48138 0.49349 1.36371 1.37285 1.43764 1.49083 1.94206 2.39012 2.82218 2.90304 3.15231 3.45764 3.57391 3.67719 3.76611 3.86023 4.06185 4.09617 4.21289 4.25434 4.26235 4.33265 4.48492 4.54064 4.58435 4.59281 4.71731 4.74435 4.81688 4.83424 4.91821 5.08033 5.23574 5.30989 5.34009 5.36219 5.43315 5.48641 5.55702 5.67291 5.69910 5.79727 5.88563 6.13557 6.28987 6.36607 6.62041 6.91485 7.23090 7.42823 8.94084 Molecular weight = 322.14amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.005684 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.297990 B = 4925.037307 C = 6950.345719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.515 4.515 8 H 0.057 0.943 9 C 0.204 3.796 10 N -0.525 5.525 11 C 0.135 3.865 12 C -0.175 4.175 13 C 0.013 3.987 14 O -0.197 6.197 15 C 0.028 3.972 16 C -0.111 4.111 17 C -0.089 4.089 18 C -0.141 4.141 19 C -0.085 4.085 20 C -0.131 4.131 21 C 0.106 3.894 22 C 0.121 3.879 23 C -0.161 4.161 24 C -0.078 4.078 25 C -0.172 4.172 26 C 0.076 3.924 27 N -0.511 5.511 28 H 0.261 0.739 29 H 0.035 0.965 30 H -0.047 1.047 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.240 0.760 34 H 0.158 0.842 35 H 0.170 0.830 36 H 0.142 0.858 37 H 0.102 0.898 38 H 0.029 0.971 39 H 0.101 0.899 40 H 0.142 0.858 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.676 -14.298 -4.080 18.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.554 4.554 8 H 0.075 0.925 9 C 0.078 3.922 10 N -0.249 5.249 11 C 0.008 3.992 12 C -0.177 4.177 13 C -0.052 4.052 14 O -0.098 6.098 15 C -0.019 4.019 16 C -0.129 4.129 17 C -0.107 4.107 18 C -0.159 4.159 19 C -0.103 4.103 20 C -0.132 4.132 21 C -0.022 4.022 22 C -0.016 4.016 23 C -0.181 4.181 24 C -0.103 4.103 25 C -0.192 4.192 26 C -0.081 4.081 27 N -0.221 5.221 28 H 0.070 0.930 29 H 0.053 0.947 30 H -0.029 1.029 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.256 0.744 34 H 0.175 0.825 35 H 0.188 0.812 36 H 0.160 0.840 37 H 0.120 0.880 38 H 0.047 0.953 39 H 0.119 0.881 40 H 0.160 0.840 41 H 0.186 0.814 42 H 0.184 0.816 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 11.503 -13.982 -3.688 18.477 hybrid contribution -0.746 1.122 0.190 1.361 sum 10.756 -12.860 -3.498 17.126 Atomic orbital electron populations 1.70129 1.07565 1.27406 1.51926 1.25812 0.95598 1.02694 0.95270 0.85549 0.78899 0.79153 0.78144 1.20198 1.20689 1.18835 1.21432 0.93622 0.91319 1.49019 0.92486 1.19530 0.90117 0.88039 0.94509 1.61997 1.28314 1.02221 1.32398 1.20138 0.90423 0.98575 0.90075 1.21144 0.95646 0.96789 1.04105 1.24250 0.85005 0.94730 1.01252 1.83969 1.25440 1.40235 1.60199 1.20001 0.95626 0.87731 0.98519 1.20295 0.91661 1.00913 1.00060 1.21299 1.00773 0.91198 0.97431 1.21064 0.93192 1.00568 1.01054 1.20480 0.96810 0.96493 0.96523 1.19969 0.94430 0.96296 1.02505 1.20961 0.96559 0.93625 0.91099 1.21207 0.90211 0.93342 0.96835 1.22054 1.00781 1.01383 0.93914 1.21953 0.95410 0.96208 0.96756 1.22426 0.96132 0.99329 1.01274 1.23098 1.00503 0.96350 0.88132 1.67468 1.14522 1.15263 1.24849 0.92993 0.94710 1.02918 0.91710 0.93594 0.74385 0.82474 0.81219 0.83987 0.87999 0.95272 0.88114 0.84030 0.81442 0.81564 0.82213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.97 13.30 21.45 0.29 -57.68 16 2 C 0.00 0.25 5.45 84.66 0.46 0.71 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.79 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 7 C -0.52 -30.20 8.31 25.60 0.21 -29.99 16 8 H 0.06 3.30 7.27 -2.91 -0.02 3.28 16 9 C 0.20 11.34 4.60 85.56 0.39 11.73 16 10 N -0.52 -23.39 4.37 -909.96 -3.98 -27.37 16 11 C 0.14 5.37 5.38 85.56 0.46 5.83 16 12 C -0.17 -5.87 5.17 -18.59 -0.10 -5.96 16 13 C 0.01 0.33 11.45 66.85 0.77 1.10 16 14 O -0.20 -5.41 10.58 -8.81 -0.09 -5.50 16 15 C 0.03 0.82 7.42 22.99 0.17 0.99 16 16 C -0.11 -2.50 10.07 22.35 0.23 -2.27 16 17 C -0.09 -1.85 10.01 22.30 0.22 -1.62 16 18 C -0.14 -3.71 9.98 22.04 0.22 -3.49 16 19 C -0.08 -2.94 10.05 22.20 0.22 -2.72 16 20 C -0.13 -4.51 6.38 -20.21 -0.13 -4.64 16 21 C 0.11 4.04 5.11 85.56 0.44 4.48 16 22 C 0.12 4.69 5.75 42.55 0.24 4.93 16 23 C -0.16 -5.05 9.72 22.36 0.22 -4.83 16 24 C -0.08 -1.98 10.18 22.47 0.23 -1.76 16 25 C -0.17 -4.52 10.11 22.36 0.23 -4.30 16 26 C 0.08 2.60 11.18 84.67 0.95 3.54 16 27 N -0.51 -21.48 8.50 -183.89 -1.56 -23.05 16 28 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.03 2.10 5.61 -2.39 -0.01 2.09 16 30 H -0.05 -2.87 8.06 -2.39 -0.02 -2.89 16 31 H 0.06 2.95 7.07 -2.38 -0.02 2.94 16 32 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 33 H 0.24 4.09 8.06 -2.91 -0.02 4.06 16 34 H 0.16 2.48 8.06 -2.91 -0.02 2.46 16 35 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 36 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 37 H 0.10 4.12 7.59 -2.91 -0.02 4.09 16 38 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 39 H 0.10 3.18 6.93 -2.39 -0.02 3.17 16 40 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.17 2.88 8.06 -2.91 -0.02 2.86 16 42 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 43 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -76.97 365.37 3.12 -73.84 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 1.01 Total: 20.23 kcal Atomic # 6 Polarization: -33.70 SS G_CDS: 5.43 Total: -28.27 kcal Atomic # 7 Polarization: -102.84 SS G_CDS: -5.26 Total: -108.10 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.09 Total: -5.50 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.97 3.12 -73.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093100408.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.818 kcal (2) G-P(sol) polarization free energy of solvation -76.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds